Arsenic binding to human metallothionein

The number of reported cases of chronic arsenic poisoning is on the rise throughout the world, making the study of the long-term effects of arsenic critical. As(3+) binds readily to biological thiols, including mammalian metallothionein (MT), which is an ubiquitous sulfur-rich metalloprotein known to coordinate a wide range of metals. The two-domain mammalian protein binds divalent metals (M) into two metal-thiolate clusters with stoichiometries of M(3)S(cys9) (beta) and M(4)S(cys11) (alpha). We report that As(3+) binds with stoichiometries of As(3)S(cys9) (beta) and As(3)S(cys11) (alpha) to the recombinant human metallothionein (rhMT) isoform 1a protein. Further, we report the complete kinetic analysis of the saturation reactions of the separate alpha and beta domains of rhMT with As(3+). Speciation in the metalation reactions was determined using time- and temperature-resolved electrospray ionization mass spectrometry. The binding reaction of As(3+) to the alpha and beta MT domains is shown to be noncooperative and involves three sequential, bimolecular metalation steps. The analyses allow for the first time the complete simulation of the experimental data for the stepwise metalation reaction of MT showing the relative concentrations of the metal-free, apo MT and each of the As-MT intermediate species as a function of time and temperature. At room temperature (298 K) and pH 3.5, the individual rate constants for the first, second, and third As(3+) binding to apo-alphaMT are 5.5, 6.3, and 3.9 M(-)(1) s(-)(1) and for apo-betaMT the constants are 3.6, 2.0, and 0.6 M(-)(1) s(-)(1). The activation energy for formation of As(1)-H(6)-betaMT is 32 kJ mol(-)(1), for As(2)-H(3)-betaMT it is 35 kJ mol(-)(1), for As(3)-betaMT it is 29 kJ mol(-)(1), for As(1)-H(8)-alphaMT it is 33 kJ mol(-)(1), for As(2)-H(5)-alphaMT it is 29 kJ mol(-)(1), and for As(3)-H(2)-alphaMT it is 23 kJ mol(-)(1).     

Electron attachment to higher fullerenes and to Sc3N@C80

We report on attachment of free electrons to fullerenes C(n) (n = 60, 70, 76, 78, 80, 82, 84, 86) and to Sc(3)N@C(80). The attachment cross sections exhibit a strong resonance at 0 eV for all species. The overall shape of the anion yield versus electron energy is quite similar for the higher fullerenes, with a minimum around 1 eV and a maximum which gradually shifts from 6 eV for C(60) to approximately 4 eV for large n. The endohedral Sc(3)N@C(80) exhibits a particularly shallow minimum and a maximum below 4 eV. We model autoionization of the anions with due consideration of the internal energy distributions. The relatively low electron affinity of Sc(3)N@C(80) is reflected in its reduced ion yield at higher attachment energies.     

The molecular approach to heterogeneous nucleation

A molecular approach to heterogeneous nucleation has been developed. The expressions for the equilibrium cluster distribution, the reversible work of the cluster formation, and the nucleation rate have been derived. Two separate statements for the work of formation were formulated. If the equilibrium cluster distribution is normalized on the monomer concentration near the substrate surface, the reversible work of formation is expressed by DeltaG(het) (I) = (F(n) (het)-F(n) (hom))-(F(1) (het)-F(1) (hom)) + DeltaG(hom) where F(n) (het) and F(n) (hom) are the Helmholtz free energies of a cluster interacting with a substrate and a cluster not interacting with the substrate, respectively. If the equilibrium cluster distribution is normalized on the monomer concentration far from the substrate surface, the work of cluster formation is given by DeltaG(het) (II) = (F(n) (het)-F(n) (hom)) + DeltaG(hom). The former expression corresponds to the approach of the classical heterogeneous nucleation theory. The cluster partition function appears to be dependent on the location of a virtual plane, which separates the volume, where the interaction of the clusters with the substrate is effective from the one where interaction is negligible. Our Monte Carlo simulations have shown that the dependence is rather weak and thus the location of the plane is not very important. According to the simulations the variation of the plane position in the range from 20 to 50 Angstroms does not lead to a considerable change of the heterogeneous nucleation rate.     

Adiabatic approximations to internal rotation

A number of subtle and confusing issues are addressed concerning large amplitude motion (LAM) coordinates (chi) for internal molecular motions, using the methyl rotation in acetaldehyde (CH(3)CHO) as a model problem. If the LAM coordinate is chosen to be one of the H-C-C-O dihedral angles rho(1), rho(2), or rho(3), it lacks the required 2pi3 periodicity, and its use is thus undesirable. An excellent local internal coordinate for this model problem is tau(3)=13(rho(1)+rho(2)+rho(3)-2pi). A similarly good but nonlocal coordinate for the adiabatic approximation of internal rotation is provided by the intrinsic reaction coordinate s. Comparison of the mass-independent V(0)(tau(3)) and the mass-dependent V(0)(s) internal rotation curves shows that the two are virtually identical for the parent isotopolog of acetaldehyde. A unified internal coordinate projection scheme for determining complementary vibrational frequencies and subsequently V(ZPVE)(chi) along a path for LAM has been formulated, where V(ZPVE)(chi) is the zero-point vibrational energy correction to the internal rotation curve. In addition to its simplicity, the projection scheme developed for a distinguished reaction path generated by constrained optimizations is appealing because the vibrational frequencies along the LAM path are invariant to chemically meaningful choices of the internal coordinates for the complementary modes.     

Reductive conjugate addition of haloalkanes to enones to form silyl enol ethers

A new method is presented for tandem reductive conjugate addition and silyl enol ether formation from cyclic and acyclic enones and enals in the presence of a Mn reductant, a Ni(terpyridine) catalyst, and a trialkylchlorosilane. The addition of secondary, tertiary, and hindered primary haloalkanes is demonstrated. Preliminary studies on the mechanism show that the intermediacy of L1(Ni)(η(3)-1-triethylsilyloxyalkenyl)X or in-situ-formed RMnX is unlikely.     

Direct conjugation of semiconductor nanocrystals to a globular protein to study protein-folding intermediates

In this Article, we study the development of semiconductor nanocrystals (quantum dots of average diameter less than 2 nm) directly conjugated to a transporter protein human serum albumin (HSA) as fluorescent biological labels. F?rster resonance energy transfer (FRET) from the amino acid tryptophan (Trp214) to quantum dot in HSA is monitored to follow the local and global changes in the protein structure during thermal unfolding and refolding processes. This study is likely to attract widespread attention as a powerful tool for the study of protein folding.     

A novel approach to generate robust classification models to predict developmental toxicity from imbalanced datasets

Computational models to predict the developmental toxicity of compounds are built on imbalanced datasets wherein the toxicants outnumber the non-toxicants. Consequently, the results are biased towards the majority class (toxicants). To overcome this problem and to obtain sensitive but also accurate classifiers, we followed an integrated approach wherein (i) Synthetic Minority Over Sampling (SMOTE) is used for re-sampling, (ii) genetic algorithm (GA) is used for variable selection and (iii) support vector machines (SVM) is used for model development. The best model, M3, has (i) sensitivity (SE) = 85.54% and specificity (SP) = 85.62% in leave-one-out validation, (ii) classification accuracy of the training set = 99.67%, (iii) classification accuracy of the test set = 92.59%; and (iv) sensitivity = 92.68, specificity = 92.31 on the test set. Consensus prediction based on models M3–M5 improved these percentages by 5% over M3. From the analysis of results we infer that data imbalance in toxicity studies can be effectively addressed by the application of re-sampling techniques.     

From magnets to metals: the response of tetragonal bisdiselenazolyl radicals to pressure

The bromo-substituted bisdiselenazolyl radical 4b (R(1) = Et, R(2) = Br) is isostructural with the corresponding chloro-derivative 4a (R(1) = Et, R(2) = Cl), both belonging to the tetragonal space group P(4)2(1)m and consisting of slipped π-stack arrays of undimerized radicals. Variable temperature, ambient pressure conductivity measurements indicate a similar room temperature conductivity near 10(-4) S cm(-1) for the two compounds, but 4b displays a slightly higher thermal activation energy E(act) (0.23 eV) than 4a (0.19 eV). Like 4a, radical 4b behaves as a bulk ferromagnet with an ordering temperature of T(C) = 17.5 K. The coercive field H(c) (at 2 K) of 1600 Oe for 4b is, however, significantly greater than that observed for 4a (1370 Oe). High pressure (0-15 GPa) structural studies on both compounds have shown that compression reduces the degree of slippage of the π-stacks, which gives rise to changes in the magnetic and conductive properties of the radicals. Relatively mild loadings (<2 GPa) cause an increase in T(C) for both compounds, that of 4b reaching a maximum value of 24 K; further compression to 5 GPa leads to a decrease in T(C) and loss of magnetization. Variable temperature and pressure conductivity measurements indicate a decrease in E(act) with increasing pressure, with eventual conversion of both compounds from a Mott insulating state to one displaying weakly metallic behavior in the region of 7 GPa (for 4a) and 9 GPa (for 4b).     

A concept to tailor electron delocalization: applying QTAIM analysis to phenyl-terpyridine compounds

To gain a deeper understanding of how structural modifications may influence photochemical properties of 4'-phenyl-2,2':6',2'-terpyridines, the investigations presented here focus on electron delocalization in 4'-phenyl-2,2':6',2'-terpyridine derivatives and their Ru(II) and Zn(II) complexes. In those systems of neighboring aromatic rings the considerable torsion between the rings is commonly regarded to be the limiting factor for a well pronounced π-conjugation between the rings. A common approach to improve the π-conjugation is to lower the steric hindrance, thus achieving a more planar geometry. Here, we present a fundamentally different approach towards enhanced π-conjugation by manipulation of the electronic properties of the pyridine-phenyl (py-ph) bond. This is accomplished by introducing various substituents at the phenylene moiety or coordinating the terpyridine moiety to transition metal ions. The electron delocalization was quantified via the DFT-calculated ellipticity in the bond-critical point (BCP) of the py-ph bond. This ellipticity can be modified due to substituents in the para position of phenylene and via the transition metals coordinated to the terpyridine moiety. Changes in electron density distribution induced by the substituents and the metal ions are further studied by means of intermolecular electron density difference plots. It was shown that a NH(2) group in the para position of the phenyl ring as well as the coordination to Ru(II) or Zn(II) ions significantly enhances the π-character of the py-ph bond. Surprisingly, an even higher π-character of the py-ph bond is achieved by introducing additional NH(2) groups in ortho position to the py-ph bond, despite the increased torsion between pyridine and phenylene. The introduction of other substituents (-NO(2), -Br, -CN, -vinyl, -ethynyl) studied within the presented work enables an actuation of the electron delocalization between terpyridine and phenylene. In doing so, the ellipticity is a concise quantity to characterize electron delocalization in the studied systems. Furthermore, the ellipticity in the BCP of the py-ph bond is related to the corresponding geometrical properties (e.g., bond length and dihedral angle) and to the DFT-calculated HOMO and LUMO energies.     

Molybdenum trioxide nanostructures: the evolution from helical nanosheets to crosslike nanoflowers to nanobelts

MoO(3) nanostructures with different morphologies, such as helical nanosheets, crosslike nanoflowers, and nanobelts, have been synthesized on a large scale by an environmentally friendly chemical route. The evolution process from helical nanosheets to crosslike nanoflowers to nanobelts is observed for the first time. The influences of reaction time and the molar ratio of molybdenum and H(2)O(2) on the morphologies of MoO(3) nanostructures have been investigated. The synthetic process is environmentally friendly and may be extended to synthesize nanostructures of other metal (W, Ti, and Cr) oxides.     

Oxidation of methanol to formaldehyde on supported vanadium oxide catalysts compared to gas phase molecules

The oxidation of methanol to formaldehyde on silica supported vanadium oxide is studied by density functional theory. For isolated vanadium oxide species silsesquioxane-type models are adopted. The first step is dissociative adsorption of methanol yielding CH3O(O=)V(O-)2 surface complexes. This makes the O=V(OCH3)3 molecule a suited model system. The rate-limiting oxidation step involves hydrogen transfer from the methoxy group to the vanadyl oxygen atom. The transition state is biradicaloid and needs to be treated by the broken-symmetry approach. The activation energies for O=V(OCH3)3 and the silsesquioxane surface model are 147 and 154 kJ/mol. In addition, the (O=V(OCH3)3)(2) dimer (a model for polymeric vanadium oxide species) and the O=V(OCH3)3(*+) radical cation are studied. For the latter the barrier is only 80 kJ/mol, indicating a strong effect of the charge on the energy profile of the reaction and questioning the significance of gas-phase cluster studies for understanding the activity of supported oxide catalysts.     

From sigma- to pi-electrophilic Lewis acids. Application to selective organic transformations

Computed enthalpies of formation for various Lewis acid complexes with representative unsaturated compounds (aldehydes, imines, alkynes, and alkenes) provide a means to evaluate the applicability of a particular catalyst in a catalytic reaction. As expected, main group Lewis acids such as BX3 show much stronger complexes with heteroatoms than with carbon-carbon multiple bonds (sigma-electrophilic Lewis acids). Gold(I) and copper(I) salts with non-nucleophilic anions increase the relative strength of coordination to the carbon-carbon multiple bonds (pi-electrophilic Lewis acids). As representative examples for the use of sigma-electrophilic Lewis acids in organic synthesis, the Lewis acid mediated allylation reactions of aldehydes and imines with allylic organometallic reagents which give the corresponding homoallyl alcohols and amines, respectively, are mentioned. The allylation method is applied for the synthesis of polycyclic ether marine natural products, such as hemibrevetoxin B, gambierol, and brevetoxin B. As representative examples for the use of pi-electrophilic Lewis acids in organic synthesis, the Zr-, Hf-, or Al-catalyzed trans-stereoselective hydro- and carbosilylation/stannylation of alkynes is mentioned. This method is extended to sigma-pi chelation controlled reduction and allylation of certain alkynylaldehydes. Gold- and copper-catalyzed benzannulation of ortho-alkynylaldehydes (and ketones) with alkynes (and alkenes) is discovered, which proceeds through the reverse electron demand Diels-Alder type [4+2] cycloaddition catalyzed by the pi-electrophilic Lewis acids. This reaction is applied for the short synthesis of (+)-ochromycinone. Palladium and platinum catalysts act as a sigma- and/or pi-electrophilic catalyst depending on substrates and reaction conditions.     

Metalloradical-catalyzed rearrangement of cycloheptatrienyl to benzyl

Rh(ttp)(C(7)H(7)) rearranged to give Rh(ttp)(CH(2)Ph) quantitatively at 120 °C in 12 d (ttp = 5,10,15,20-tetratolylporphyrinato dianion). This process is 10(10) faster than for the organic analogue. Mechanistic investigation suggests that a Rh(II)(ttp)-catalyzed pathway is operating.     

Oxygen binding to sulfur in nitrosylated iron--thiolate complexes: relevance to the Fe-containing nitrile hydratases

Iron-nitrosyl complex containing S-bonded monosulfinate [PPN][(NO)Fe(S,SO2-C6H4)(S,S-C6H4)] (3) has been isolated from sulfur oxygenation of complex [PPN][(NO)Fe(S,S-C6H4)2] (2) which is obtained from addition of NO molecule to [PPN][(C4H8O)Fe(S,S-C6H4)2] (1) in organic solvents. This result reveals that binding of NO to the iron center promotes sulfur oxygenation of iron dithiolates by dioxygen and stabilizes the S-bonded sulfinate iron species. Analysis of the bond angles for complexes 2 and 3 reveals that iron is best described as existing in a distorted trigonal bipyramidal coordination environment surrounded by one NO, three thiolates, and one sulfinate in complex 3, whereas the distorted square pyramidal geometry is adopted in complex 2. Complex 3 further reacts in organic solvents with molecular oxygen in the presence of [PPN][NO2] to produce the dinuclear bis(sulfinate) complex [PPN]2[(NO)Fe(SO2,SO2-C6H4)(S,S-C6H4)]2 (4). Complex 3 showed reaction with PPh3 in THF/CH2Cl2 to yield complex 2 and Ph3PO. Upon photolysis of CH2Cl2 solution of complex 3 under N2 purge at ambient temperature, the UV-vis and IR spectra consistent with the formation of complex 2 demonstrate that complex 2 and 3 are photochemically interconvertible. Obviously, complex 3 is thermally quite stable but is photochemically active toward [O] release. Also described are the X-ray crystal structures of 3 and 4.     

Halide coordination to zinc porphyrin sensitizers anchored to nanocrystalline TiO2

The coordination of halide ions to 5-(3,5-dicarboxyphenyl)-10,15,20-tri- p-tolylporphinatozinc(II) anchored to mesoporous nanocrystalline (anatase) TiO 2 thin films (TiO 2/ZnP) immersed in propylene carbonate was quantified. The addition of tetrabutylammonium halide salts to the external propylene carbonate electrolyte resulted in a red shift in the absorption spectrum with the maintenance of five isosbestic points. The absorption spectra were within experimental error the same for ZnP and ZnP-X (-) compared to TiO 2/ZnP and TiO 2/ZnP-X (-): A SoretZnP = 427 nm (epsilon = 574 000 M (-1) cm (-1)), A SoretZnP-Cl (-) = 435 nm (epsilon = 905 000 +/- 12 000 M (-1) cm (-1)), A SoretZnP-Br (-) = 436 nm (epsilon = 776 000 +/- 30 000 M (-1) cm (-1)), and A SoretZnP-I (-) = 437 nm (epsilon = 620 000 +/- 56 000 M (-1) cm (-1)). Titration studies with the halides revealed sharp isosbestic points consistent with formation of a 1:1 halide/porphyrin adduct. Equilibrium constants for ZnP were found to be 1670 M (-1) for Cl (-), 96 M (-1) for Br (-), and 5.5 M (-1) for I (-), and the corresponding values for TiO 2/ZnP were significantly smaller, 780 M (-1), 70 M (-1) and 3.4 M (-1). A quasi-reversible wave was observed by cyclic voltammetry of TiO 2/ZnP, E 1/2(ZnP (+/0)) = +790 mV vs Ag/AgCl, that was shifted 160 mV after addition of excess chloride, E 1/2(ZnP-Cl (0/-)) = +630 mV. In regenerative solar cells with quinone/hydroquinone redox mediators, TiO 2/ZnP and TiO 2/ZnP-X (-), where X is Cl, Br, or I, were found to convert light into electrical power. The photocurrent action spectrum demonstrated that energy conversion was initiated by light absorption of ZnP and/or the halide adduct.     

Radical addition to 2-isopropenyl-5-butoxyoxazole

The preparation and the spectroscopic analysis of a dimeric adduct ( V ) obtained from 2-isopropenyl-5-butoxyoxazole ( III ) and α,α-azobis-isobutyronitrile (AIBN) ( IV ) are reported. It is noteworthy that ( III ) inhibits completely the homopolymerization of styrene. This is in strong opposition to the facile homopolymerization and copolymerization of 2-isopropenyl-4,5-dimethyloxazole with styrene. The smooth formation of ( V ) is also in sharp contrast to the lack of reactivity of ( III ) towards cationic initiators.     

Selective oxoammonium salt oxidations of alcohols to aldehydes and aldehydes to carboxylic acids

The oxidation of alcohols to aldehydes using stoichiometric 4-acetamido-2,2,6,6-tetramethylpiperidine-1-oxoammonium tetrafluoroborate (1) in CH(2)Cl(2) at room temperature is a highly selective process favoring reaction at the carbinol center best able to accommodate a positive charge. The oxidation of aldehydes to carboxylic acids by 1 in wet acetonitrile is also selective; the rate of the process correlates with the concentration of aldehyde hydrate. A convenient and high yield method for oxidation of alcohols directly to carboxylic acids has been developed.     

Shortcut to mycothiol analogues

[structure: see text] The synthesis of a simplified thioglycosidic analogue (2) of mycothiol (1) is described. Evaluation of 2 against mycothiol S-conjugate amidase from Mycobacterium tuberculosis reveals good specific activity (7500 nmol min(-)(1) mg-protein(-)(1), vs 14 200 for 1), indicating that 2 can serve as a starting point for antitubercular drug design.     

A simple route to full structural analysis of biophosphates and their application to materials discovery

An integrated suite of synthesis and characterisation techniques that includes synchrotron-based single crystal, powder X-ray diffraction, nuclear magnetic resonance and electron diffraction have been employed to uncover two new distinct structures in the Ca(x)Ba(2-x)P(2)O(7) polymorphic phosphate system. These materials have particular relevance for their application as both biomaterials and phosphors. Calcium barium pyrophosphate, CaBaP(2)O(7), was shown by a combination of spectroscopic and diffraction techniques to have two polymorphs distinct in structure from all of the five previously reported polymorphs of Ca, Sr and Ba pyrophosphate. A high temperature polymorph HT-CaBaP(2)O(7) prepared at 1200 °C is orthorhombic, of space group P(212121) with a = 13.0494 ?, b = 8.9677 ?, c = 5.5444 ?. A low temperature polymorph LT-CaBaP(2)O(7), prepared below 1000 °C, is monoclinic with space group P2(1)/c and dimensions a = 12.065 ?, b = 10.582 ?, c = 9.515 ?, β = 94.609°.