Experimental charge density study into C-C σ-interactions in a Binor-S rhodium complex

Transition-metal complexes containing (C-C)→M σ-interactions have potential applications in both catalysis and the activation and cleavage of C-C bonds. Fully characterising the bonding and interactions in complexes containing such (C-C)→M σ-interactions is vital to understand their chemical behaviour. As a result a high-resolution experimental X-ray charge density study has been undertaken on [Rh(Binor-S)(PCy(3))][HCB(11)Me(11)] (Binor-S = 1,2,4,5,6,8-dimetheno-s-indacene) which contains a (C-C)→Rh interaction. The data are analysed using Bader's "Atoms in Molecules" (AIM) approach with particular attention paid to the interactions around the rhodium centre. The results provide clear evidence for the σ(C-C)→Rh interaction in the solid-state which is classified as a weak covalent interaction. These results are supported by theoretical calculations.     

Chemical bonds without "chemical bonding"? A combined experimental and theoretical charge density study on an iron trimethylenemethane complex

High-resolution X-ray diffraction data, in conjunction with DFT(B3LYP) quantum calculations, have been used in a QTAIM analysis of the charge density in the trimethylenemethane (TMM) complex Fe(eta(4)-C[CH(2)](3))(CO)(3). The agreement between the theoretical and experimental topological properties is excellent. Only one bond path is observed between the TMM ligand and the Fe atom, from the central C(alpha) atom. However, much evidence, including from the delocalization indices and the source function, suggests that there is a strong chemical interaction between the Fe and C(beta) atoms, despite the formal lack of chemical bonding according to QTAIM.     

Asymmetric homogeneous hydrogenation of α-acylaminocinnamic acids and esters catalyzed by a rhodium (I) complex of dioxop

α-Acylaminocinnamic acids and esters are hydrogenated with rhodium (I) complex containing (2R, 4R)-cis-bis(diphenylphosphinomethyl)-1,3-dioxolan. The Z acids give enantiomeric excess up to 79% in the presence of triethylamine; increasing the steric bulk of the enamide moiety has only a small effect on the enantiomeric excess. The esters are reduced with low optical yield.     

Wet chemical synthesis and a combined X-ray and Mössbauer study of the formation of FeSb2 nanoparticles

Understanding how solids form is a challenging task, and few strategies allow for elucidation of reaction pathways that are useful for designing the synthesis of solids. Here, we report a powerful solution-mediated approach for formation of nanocrystals of the thermoelectrically promising FeSb(2) that uses activated metal nanoparticles as precursors. The small particle size of the reactants ensures minimum diffusion paths, low activation barriers, and low reaction temperatures, thereby eliminating solid-solid diffusion as the rate-limiting step in conventional bulk-scale solid-state synthesis. A time- and temperature-dependent study of formation of nanoparticular FeSb(2) by X-ray powder diffraction and iron-57 M?ssbauer spectroscopy showed the incipient formation of the binary phase in the temperature range of 200-250 °C.     

A theoretical study of an unusual Y-shaped three-coordinate Pt complex: Pt(0) σ-disilane complex or Pt(II) disilyl complex?

The unusual Y-shaped structure of the recently reported three-coordinate Pt complex Pt[NHC(Dip)(2)](SiMe(2)Ph)(2) (NHC = N-heterocyclic carbene; Dip = 2,6-diisopropylphenyl) was considered a snapshot of the reductive elimination of disilane. A density functional theory study indicates that this structure arises from the strong trans influence of the extremely σ-donating carbene and silyl ligands. Though this complex can be understood to be a Pt(II) disilyl complex bearing a distorted geometry due to the Jahn-Teller effect, its (195)Pt NMR chemical shift is considerably different from those of Pt(II) complexes but close to those of typical Pt(0) complexes. Its Si···Si bonding interaction is ~50% of the usual energy of a Si-Si single bond. The interaction between the Pt center and the (SiMe(2)Ph)(2) moiety can be understood in terms of donation and back-donation interactions of the Si-Si σ-bonding and σ*-antibonding molecular orbitals with the Pt center. Thus, we conclude that this is likely a Pt(0) σ-disilane complex and thus a snapshot after a considerable amount of the charge transfer from disilane to the Pt center has occurred. Phenyl anion (Ph(-)) and [R-Ar](-) [R-Ar = 2,6-(2,6-iPr(2)C(6)H(3))(2)C(6)H(3)] as well as the divalent carbon(0) ligand C(NHC)(2) also provide similar unusual Y-shaped structures. Three-coordinate digermyl, diboryl, and silyl-boryl complexes of Pt and a disilyl complex of Pd are theoretically predicted to have similar unusual Y-shaped structures when a strongly donating ligand coordinates to the metal center. In a trigonal-bipyramidal Ir disilyl complex [Ir{NHC(Dip)(2)}(PH(3))(2)(SiMe(3))(2)](+), the equatorial plane has a similar unusual Y-shaped structure. These results suggest that various snapshots can be shown for the reductive eliminations of the Ge-Ge, B-B, and B-Si σ-bonds.     

Can the replacement of a single atom in the enzyme horseradish peroxidase convert it into a monoxygenase? A density functional study

Density functional calculations on horseradish peroxidase mutants are presented, whereby one or two of the nitrogen atoms of the axial histidine ligand have been replaced by phosphorus atoms. Our calculations show that phosphorus entices a push effect on the oxoiron group, whereas a histidine side chain withdraws electrons. As a result, we predict that a phosphorus-substituted histidine ligand will convert the active form of a peroxidase into a monoxygenase. This subsitution may be useful for the bioengineering of commercially exploitable enzymes.     

Hydronium ion complex of 18-crown-6: where are the protons? A density functional study of static and dynamic properties

A quantum-chemical study employing the BLYP density functional is reported for the complex of H3O+ with 18-crown-6. According to a Car-Parrinello molecular dynamics (CPMD) study at 340 K, the complex is quite flexible, and is characterized by three quasi-linear (two-center) hydrogen-bond interactions for most of the time. On a time scale of 10 ps, frequent inversions of H3O+ are observed, as well as two 120 degrees rotations switching the hydrogen bonds from one set of crown-ether O atoms to the other. These results are consistent with density-functional studies of stationary points on the potential energy surface, which show how the crown "catalyzes" the guest's inversion. Two close-lying minima are characterized, as well as two distinct transition states connecting them, either via H3O+ inversion or rotation, with barriers of 1.0 and 4.6 kcal/mol, respectively, at the BLYP/II'//BLYP/6-31G level. Orbital interactions between lone pairs on ether O atoms and hydronium sigma(OH) antibonding orbitals are important factors for the directionality of the hydrogen bonds.     

Mechanisms of the reactions of propane with CBr3+ cation and superelectrophilic complex CBr4+·AlBr3- containing a bromine-centered cationic center: a theoretical study

Fragments of the potential energy surfaces (PES) of the systems [C₃H₈ + CBr₃ ⁺] and [C₃H₈ + Br₂CBr⁺·Br₂AlBr₂ ^–] were simulated by the MNDO/PM3 method. Energy minima corresponding to weakly bound adducts of propane molecule with the CBr₃ ⁺ cation or neutral complex CBr₃ ⁺·AlBr₄ ^– were found on the PES's of both systems. These are adducts with the coordination of a H atom of the methylene group of the propane molecule to the electrophile at the Br atom carrying the largest positive charge. As the fragments of the adducts are brought close together, the coordinated H atom migrates to the C atom of the CBr₃ ⁺ fragment. The potential barriers of these migrations were found to be low for both systems. The reactions proceed without formation of cyclic intermediates or transition states typical of the Olah mechanism.     

Formation and structure of Co₂O₄: a combined IR matrix isolation and theoretical study

The formation and structure of dicobalt tetroxide (Co?O?) has been investigated using matrix isolation in solid neon and argon coupled to infrared spectroscopy and quantum chemical methods. It is found that Co?O? can be formed by dimerization of cobalt dioxide without activation energy by diffusion of ground state CoO? molecules at 9 K in the dark. The IR data on eight fundamentals, isotopic effects and quantum chemical calculations are both consistent with a centro-symmetrical structure with two pairs of equivalent oxygen atoms, engaged in a stronger terminal Co-O bond and in a weaker bridging Co-O-Co position. Evidence for other, metastable states is also presented, but the data are not conclusive. The electronic structure and formation pathway has been investigated using the Tao-Perdew-Staroverov-Scuseria/triple-zeta valence polarived basis set (TPSS/TZVP) and broken symmetry unrestricted density functional theory (BS-UDFT) approach and the ground electronic state is predicted to be an open shell 1Ag singlet with the quintet, triplet, septet, and nonet states above by 3.3, 4.9, 9.3, and 27.7 kcal/mol, respectively, but certainly has a complex multireference character that hinders the use of more precise multireference approaches. Different formation pathways have been considered, and the 2(O═Co═O) → Co?O? dimerization reaction is found to be the only barrierless channel and to be strongly exothermic. Comparisons with another transition metal (TM) oxide system (V?O?) suggests that the difference in predicted ground state geometries in TM?O? systems might be due in HOMO-LUMO shapes of the isolated dioxide subunits and optimal overlap configurations.     

Intramolecular charge transfer in π-conjugated oligomers: a theoretical study on the effect of temperature and oxidation state

Intramolecular charge transfer (ICT) of gaseous π-conjugated oligo-phenyleneethynylenes (OPE) induced by a homogeneous applied electric field has been theoretically investigated using a combined approach integrating molecular dynamics (MD) simulations and Perturbed Matrix Method calculations. In line with recent investigations, our results indicate the peculiar role of conformational transitions on OPE electronic properties which reflects on a strong temperature effect on ICT. Electron transfer reactions inducing chemical alteration on OPE, also taken into account in this study, revealed extremely important for explaining non-linear ICT effects and probably plays a central role in the mechanisms underlying molecular transport junctions. Our study further points out the necessity of using MD-based approach for modelling molecular electronics, even when relatively rigid molecular systems are concerned.     

Theoretical study of the semihydrogenation of alkynes catalyzed by Pd(0) complexes: Is a zwitterionic pathway possible?

Density functional theory B3LYP calculations have been carried out for the Pd(diimine)(C₂H₂)+H₂Pd(diimine)(C₂H₄) reaction, which is the key reaction in the semihydrogenation of alkynes homogeneously catalyzed by (diimine)palladium(0) complexes. The results show that a H₂ heterolytic addition across one Pd–N bond opens a feasible zwitterionic pathway for the catalytic process, and accounts for the pairwise transfer of the two hydrogen atoms inferred from parahydrogen induced polarization NMR experiments.Proceedings of the 11th International Congress of Quantum Chemistry satellite meeting in honor of Jean-Louis Rivail     

Near-infrared-emitting phthalocyanines. A combined experimental and density functional theory study of the structural, optical, and photophysical properties of Pd(II) and Pt(II) α-butoxyphthalocyanines

The structural, optical, and photophysical properties of 1,4,8,11,15,18,22,25-octabutoxyphthalocyaninato-palladium(II), PdPc(OBu)(8), and the newly synthesized platinum analogue PtPc(OBu)(8) are investigated combining X-ray crystallography, static and transient absorption spectroscopy, and relativistic zeroth-order regular approximation (ZORA) Density Functional Theory (DFT)/Time Dependent DFT (TDDFT) calculations where spin-orbit coupling (SOC) effects are explicitly considered. The results are compared to those previously reported for NiPc(OBu)(8) (J. Phys. Chem. A 2005, 109, 2078) in an effort to highlight the effect of the central metal on the structural and photophysical properties of the group 10 transition metal octabutoxyphthalocyanines. Different from the nickel analogue, PdPc(OBu)(8) and PtPc(OBu)(8) show a modest and irregular saddling distortion of the macrocycle, but share with the first member of the group similar UV-vis spectra, with the deep red and intense Q-band absorption experiencing a blue shift down the group, as observed in virtually all tetrapyrrolic complexes of this triad. The blue shift of the Q-band along the MPc(OBu)(8) (M = Ni, Pd, Pt) series is interpreted on the basis of the metal-induced electronic structure changes. Besides the intense deep red absorption, the title complexes exhibit a distinct near-infrared (NIR) absorption due to a transition to the double-group 1E (π,π*) state, which is dominated by the lowest single-group (3)E (π,π*) state. Unlike NiPc(OBu)(8), which is nonluminescent, PdPc(OBu)(8) and PtPc(OBu)(8) show both deep red fluorescence emission and NIR phosphorescence emission. Transient absorption experiments and relativistic spin-orbit TDDFT calculations consistently indicate that fluorescence and phosphorescence emissions occur from the S(1)(π,π*) and T(1)(π,π*) states, respectively, the latter being directly populated from the former, and the triplet state decays directly to the S(0) surface (the triplet lifetime in deaerated benzene solution was 3.04 μs for Pd and 0.55 μs for Pt). Owing to their triplet properties, PdPc(OBu)(8) and PtPc(OBu)(8) have potential for use in photodynamic therapy (PDT) and are potential candidates for NIR light emitting diodes or NIR emitting probes.     

Experimental and theoretical study of the charge transport property of 4,4′-N,N′-dicarbazole-biphenyl

The hole and electron mobilities of the amorphous films of the organic semiconductor 4,4′-N,N′-dicarbazole-biphenyl (CBP) at different electric fields were measured through the time of flight (TOF) method. Based on its crystalline structure, the hole and electron mobilities of CBP were calculated. A detailed comparison between experimental and theoretical results is necessary for further understanding its charge transport properties. In order to do this, charge mobilities at zero electric field, μ(0), were deduced from experimental data as a link between experimental and theoretical data. It was found that the electron transport of CBP is less affected by traps compared with its hole transport. This unusual phenomenon can be understood through the distributions of frontier molecular orbitals. We showed that designing materials with frontier molecular orbitals localized at the center of the molecule has the potency to reduce the influence of traps on charge transport and provide new insights into designing high mobility charge transport materials.     

A theoretical charge density study on nitrogen-rich 4,4′,5,5′-tetranitro-2,2′-bi-1H-imidazole (TNBI) energetic molecule

The bond topological and electrostatic properties of nitrogen-rich 4,4′,5,5′-tetranitro-2,2′-bi-1H-imidazole (TNBI) energetic molecule have been calculated from the DFT method with the basis set 6-311G** and the AIM theory. The optimized geometry of this molecule is almost matched with the experimental geometric parameters. The electron density at the bond critical point and the Laplacian of electron density of C–NO₂ bonds are not equal, one of them is much weaker than the other. Similar trend exists in the C–N bonds of the imidazole ring of the molecule. The ratio of the bond dissociation energy (BDE) of the weakest bond to the molecular total energy exhibits nearly a linear correlation with the impact sensitivity; its h ₅₀% value is ~32.01 cm. The electrostatic potential around both the nitro groups are found unequal; the NO₂ group of weakest C–NO₂ bond exhibits an extended electronegative region.     

Can cytosine, thymine and uracil be formed in interstellar regions? A theoretical study

This theoretical study investigates possible synthetic routes to cytosine, uracil and thymine in the gas phase from precursor molecules that have been detected in interstellar media. Studies at the CCSD(T)/6-311++G(d,p)//B3LYP/6-311++G(d,p) level of theory suggest that: The reactions between :CCCNH and :CCCO with monosolvated urea may constitute viable interstellar syntheses of cytosine and uracil. No low energy equilibration between cytosine and uracil has been demonstrated. The interaction of :CH(2) with the 5 C-H bond of uracil may form thymine in an energetically favourable reaction, but competing reactions where :CH(2) reacts with double bonds and other CH and NH bonds of uracil, reduce the effectiveness of this synthesis. The reaction between the hydrated propional enolate anion and isocyanic acid may produce thymine, in a reaction sequence where ΔG(reaction)(298 K) is -22 kJ mol(-1) and the maximum energy requirement (barrier to the first transition state) is only 47 kJ mol(-1).     

Synthesis,X-ray crystal structure and magnetic study of a μ 1,5-dca bridged ferromagnetic dimeric copper(II) complex

Reaction of Cu(NO₃)₂ · 3H₂O, 1-(N-salicyalideneimine)-2-(N,N-dimethyl)-aminoethane (HL¹), LiClO₄, and sodium dicyanamide (Nadca) in aqueous medium affords a dimeric complex [Cu₂(L¹)₂ (μ_{1, 5}-dca)](ClO₄) (1). Single crystal X-ray analysis reveals that 1 is dinuclear with copper(II) ions bridged by a single dicyanamide group in end-to-end fashion. The coordination environment around copper(II) is square planar. Two nitrogens and oxygen of the tridentate Schiff-base ligand (HL¹) occupy three coordination sites of the square plane while the remaining site is occupied by the nitrogen of a terminal nitrile of the bridging dca. The nitrogen of the other terminal nitrile group of the μ_1,5-dca ligand connects a neighboring [CuL¹] unit to yield [Cu₂(L¹)₂(μ_1,5-dca)](ClO₄) (1). Variable temperature magnetic susceptibility measurements show that the magnetic interaction is ferromagnetic (J = 1.93 cm^?1). The results of a magnetic model are in good agreement with the experimental data.     

A density functional study of the reactivity and stability of mixed copper complexes. Is hardness the reason?

Mixed-ligand Cu2+ ternary complexes, formed by an aromatic diimine and a second ligand with O donor atoms, show a higher than expected stability. To understand the factors affecting the stability of these systems, we performed a density functional study of [Cu(H2O)5]2+, [Cu(N-N)(H2O)3]2+, and [Cu(N-N)(O-O)H2O] (N-N is 1,10-phenanthroline, 5-nitro-1,10-phenanthroline, or 3,4,7,8-tetramethyl-1,10-phenanthroline; and O-O is oxalate). In the present study, full geometry optimization (B3LYP/3-21G**) has been performed without symmetry constraints and a comparison with some available experimental results has been made. Bond distances, equilibrium geometries, harmonic frequencies, and net atomic charges from Mulliken populations are presented. Since the principle of hard and soft acids and bases has been widely used to explain the stability of these complexes, we also calculated and analyzed the global hardness and the local softness. The results of the global hardness do not support the commonly held idea that harder acids will preferably bind to harder ligands, while softer acids will bind to softer ligands. Interestingly, local softness and electron affinity correlate well with the formation constants of these compounds and provide an explanation of the reactivity behavior. The present results may help to rationalize the stability and reactivity of these systems.