Investigating the effect of hydrogen bonding environments in amide cleavage reactions at zinc(II) complexes with intramolecular amide oxygen co-ordination

Amide oxygen co-ordination to a zinc(II) ion around a hydrogen bonding microenvironment is a common structural/functional feature of metalloproteases. We report two strategies to position hydrogen bonding groups in the proximity of a zinc(II)-bound amide oxygen, and we investigate their effect on the stability of the amide group. Polydentate tripodal ligands (6-R1-2-pyridylmethyl)-R2 (R1= NHCOtBu, R2= N(CH2-py-6-X)2 X = H L1, X = NH2, H L2, X = NH2 L3) form [(L)Zn]2+ cations (L =L1, 1; L2, 2; L3, 3) with intramolecular amide oxygen co-ordination (1-3), and intramolecular N-H...O=C(amide) hydrogen bonding (2, 3) rigidly fixed by the ligand framework. 1-3 undergo cleavage of the tert-butyl amide upon addition of Me4NOH.5H2O (1 equiv.) in methanol at 50(1) degrees C. Under these conditions the half-life, t(1/2), of the amide bond is 0.4 h for 1, 9 h for 2 and 320 h for 3. Mononuclear zinc(II) complexes of (6-NHCOtBu-2-pyridylmethyl)-R2(R2= N(CH2CH2)2S) L4 and chelating N2 ligands without hydrogen bonding groups (1,10-phenanthroline L5, 2-(aminomethyl)pyridine L6) as control compounds, and with an amino hydrogen bonding group (6-amino-2-(aminomethyl)pyridine L7) have been synthesised. Amide cleavage is in this case faster at the zinc(II) complex with the amino hydrogen bonding group. Thus, hydrogen bonding environments can both accelerate and slow down amide bond cleavage reactions at zinc(II) sites. Importantly, the magnitude of the effect exerted by the hydrogen bonding environments was found to be significant; 800-fold rate difference. This result highlights the importance of hydrogen bonding environments around metal centres in amide cleavage reactions, which may be relevant to the chemistry of natural metalloproteases and applicable to the design of more efficient artificial protein cleaving agents.     

A deprotonated intermediate in the amide methanolysis reaction of an N4O-ligated mononuclear zinc complex

Treatment of [(ppbpa)Zn](ClO4)2 (1(ClO4)2, ppbpa = N-((6-(pivaloylamido)-2-pyridyl)methyl)-N,N-bis((2-pyridyl)methyl)amine) with 1 equiv of Me(4)NOH.5H(2)O in methanol-acetonitrile solution results within minutes in the stoichiometric formation of a complex having a deprotonated amide, [(ppbpa-)Zn]ClO4 (3). Complex 3 has been characterized by 1H and 13C NMR, FTIR, and elemental analysis. Notably, upfield shifts of specific 1H NMR resonances of the amide-appended pyridyl moiety in 3, versus those found for 1(ClO4)2, indicate delocalization of the anionic charge within the amide-appended pyridyl donor of this complex. Heating of analytically pure 3 in methanol-acetonitrile results in amide alcoholysis. Overall, this alcoholysis reaction is second-order, with a first-order dependence on both 3 and methanol. Analysis of the rate of decay of 3 as a function of temperature yielded activation parameters consistent with an intramolecular amide cleavage process (DeltaH++ = 15.0(3) kcal/mol, DeltaS++ = -33(1) eu). A possible reaction mechanism for amide alcoholysis is presented which involves reaction of the deprotonated amide intermediate 3 with methanol to produce a Lewis activated-type structure from which amide cleavage may be initiated. Additional support for this mechanistic pathway has been obtained through examination of the analogous ethanolysis reaction and via evaluation of the effect of varying steric hindrance near the amide carbonyl unit.     

Thioester hydrolysis reactivity of zinc hydroxide complexes: investigating reactivity relevant to glyoxalase II enzymes

A recently reported binuclear zinc hydroxide complex [(L(1)Zn(2))(mu-OH)](ClO(4))(2) (, L(1) = 2,6-bis[(bis(2-pyridylmethyl)amino)methyl]-4-methylphenolate monoanion) containing a single bridging hydroxide was examined for thioester hydrolysis reactivity. Treatment of it with hydroxyphenylthioacetic acid S-methyl ester in dry CD(3)CN results in no reaction after approximately 65 h at 45(1) degrees C. Binuclear zinc hydroxide complexes of the N-methyl-N-((6-neopentylamino-2-pyridyl)methyl)-N-((2-pyridyl)methyl)amine (L(2)) and N-methyl-N-((6-neopentylamino-2-pyridyl)methyl)-N-((2-pyridyl)ethyl)amine (L(3)) chelate ligands were prepared by treatment of each ligand with molar equivalent amounts of Zn(ClO(4))(2).6H(2)O and KOH in methanol. These complexes, [(L(2)Zn)(2)(mu-OH)(2)](ClO(4))(2) and [(L(3)Zn)(2)(mu-OH)(2)](ClO(4))(2) (), which have been structurally characterized by X-ray crystallography, behave as 1 : 1 electrolytes in acetonitrile, indicating that the binuclear cations dissociate into monomeric zinc hydroxide species in solution. Treatment of them with one equivalent of hydroxyphenylthioacetic acid S-methyl ester per zinc center in acetonitrile results in the formation of a zinc alpha-hydroxycarboxylate complex, [(L(2))Zn(O(2)CCH(OH)Ph)]ClO(4).1.5H(2)O or [(L(3))Zn(O(2)CCH(OH)Ph)]ClO(4).1.5H(2)O, and CH(3)SH. These reactions, to our knowledge, are the first reported examples of thioester hydrolysis mediated by zinc hydroxide complexes. The results of this study suggest that a terminal Zn-OH moiety may be required for hydrolysis reactivity with a thioester substrate.     

Novel iron(III) complexes of sterically hindered 4N ligands: regioselectivity in biomimetic extradiol cleavage of catechols

The iron(III) complexes of the 4N ligands 1,4-bis(2-pyridylmethyl)-1,4-diazepane (L1), 1,4-bis(6-methyl-2-pyridylmethyl)-1,4-diazepane (L2), and 1,4-bis(2-quinolylmethyl)-1,4-diazepane (L3) have been generated in situ in CH 3CN solution, characterized as [Fe(L1)Cl 2] (+) 1, [Fe(L2)Cl 2] (+) 2, and [Fe(L3)Cl 2] (+) 3 by using ESI-MS, absorption and EPR spectral and electrochemical methods and studied as functional models for the extradiol cleaving catechol dioxygenase enzymes. The tetrachlorocatecholate (TCC (2-)) adducts [Fe(L1)(TCC)](ClO 4) 1a, [Fe(L2)(TCC)](ClO 4) 2a, and [Fe(L3)(TCC)](ClO 4) 3a have been isolated and characterized by elemental analysis, absorption spectral and electrochemical methods. The molecular structure of [Fe(L1)(TCC)](ClO 4) 1a has been successfully determined by single crystal X-ray diffraction. The complex 1a possesses a distorted octahedral coordination geometry around iron(III). The two tertiary amine (Fe-N amine, 2.245, 2.145 A) and two pyridyl nitrogen (Fe-N py, 2.104, 2.249 A) atoms of the tetradentate 4N ligand are coordinated to iron(III) in a cis-beta configuration, and the two catecholate oxygen atoms of TCC (2-) occupy the remaining cis positions. The Fe-O cat bond lengths (1.940, 1.967 A) are slightly asymmetric and differ by 0.027 A only. On adding catecholate anion to all the [Fe(L)Cl 2] (+) complexes the linear tetradentate ligand rearranges itself to provide cis-coordination positions for bidentate coordination of the catechol. Upon adding 3,5-di- tert-butylcatechol (H 2DBC) pretreated with 1 equiv of Et 3N to 1- 3, only one catecholate-to-iron(III) LMCT band (648-800 nm) is observed revealing the formation of [Fe(L)(HDBC)] (2+) involving bidentate coordination of the monoanion HDBC (-). On the other hand, when H 2DBC pretreated with 2 equiv of Et 3N or 1 or 2 equiv of piperidine is added to 1- 3, two intense catecholate-to-iron(III) LMCT bands appear suggesting the formation of [Fe(L)(DBC)] (+) with bidentate coordination of DBC (2-). The appearance of the DBSQ/H 2DBC couple for [Fe(L)Cl 2] (+) at positive potentials (-0.079 to 0.165 V) upon treatment with DBC (2-) reveals that chelated DBC (2-) in the former is stabilized toward oxidation more than the uncoordinated H 2DBC. It is remarkable that the [Fe(L)(HDBC)] (2+) complexes elicit fast regioselective extradiol cleavage (34.6-85.5%) in the presence of O 2 unlike the iron(III) complexes of the analogous linear 4N ligands known so far to yield intradiol cleavage products exclusively. Also, the adduct [Fe(L2)(HDBC)] (2+) shows a higher extradiol to intradiol cleavage product selectivity ( E/ I, 181:1) than the other adducts [Fe(L3)(HDBC)] (2+) ( E/ I, 57:1) and [Fe(L1)(HDBC)] (2+) ( E/ I, 9:1). It is proposed that the coordinated pyridyl nitrogen abstracts the proton from chelated HDBC (-) in the substrate-bound complex and then gets displaced to facilitate O 2 attack on the iron(III) center to yield the extradiol cleavage product. In contrast, when the cleavage reaction is performed in the presence of a stronger base like piperidine or 2 equiv of Et 3N a faster intradiol cleavage is favored over extradiol cleavage suggesting the importance of bidentate coordination of DBC (2-) in facilitating intradiol cleavage.     

The donor ability of the chelated carbonate ligand: protonation and metallation of [(L)Co(O2CO)]+ complexes in aqueous solution

The syntheses and X-ray structures of [Co(Me-tpa)O(2)COZnCl(3)], [Co(pmea)O(2)COZnCl(3)].H(2)O [Co(trpyn)O(2)COZn(OH(2))(4)OCO(2)Co(trpyn)](ZnCl(4))(2).H(2)O, [Co(trpyn)(O(2)COH)]ZnCl(4).3H(2)O and [Co(trpyn)(O(2)CO)]ClO(4) are reported (Me-tpa = [(6-methyl-2-pyridyl)methyl]bis(2-pyridylmethyl)amine, pmea = bis(2-pyridylmethyl)-2-(2-pyridylethyl)amine, trpyn = tris(2-(1-pyrazolyl)ethyl)amine). The chelated bicarbonate complex [Co(trpyn)(O(2)COH)]ZnCl(4).3H(2)O is isolated as a crystalline solid from an acidic solution of the parent carbonate [Co(trpyn)(O(2)CO)]ClO(4), and X-ray structural analysis shows that lengthening of the C[double bond, length as m-dash]O(exo) bond and shortening of the C-O(endo) bond accompanies protonation. The bimetallic complex [Co(Me-tpa)O(2)COZnCl(3)] results from the unexpected coordination of ZnCl(3)(-) to the exo O atom of a chelated carbonate ligand. This complex is obtained from both acidic and neutral solutions in which [Zn(2+)] = 1.0 M, while the structurally similar complex [Co(pmea)O(2)COZnCl(3)].H(2)O is isolated from an analogous neutral solution. The trimetallic complex [Co(trpyn)O(2)COZn(OH(2))(4)OCO(2)Co(trpyn)](ZnCl(4))(2).H(2)O crystallises on prolonged standing of [Co(trpyn)(O(2)CO)]ClO(4) in a neutral solution having [Zn(2+)] = 1.0 M. The Zn-O bond lengths in all three complexes are indicative of bonds of significant strength. DFT calculations show that the nature of the bonding interaction between the Co(iii) ion and the endo O atoms of the carbonate ligand remain essentially unaffected by coordination of Zn(2+) to the exo O atom. They also show that such coordination of Zn(2+) decreases the C-O(exo) bond order.     

Structures and properties of ruthenium(II) complexes of pyridylamine ligands with oxygen-bound amide moieties: regulation of structures and proton-coupled electron transfer

Tris(2-pyridylemthyl)amine (TPA) derivatives having two amide moieties at the 6-positions of the two pyridine rings of TPA and their Ru(II) complexes were synthesized and characterized by spectroscopic methods, X-ray crystallography, and electrochemical measurements. The complexes prepared were [RuCl(L)]PF(6) (L = N,N-bis(6-(1-naphthoylamide)-2-pyridylmethyl)-N-(2-pyridylmethyl)amine (1), N,N-bis(6-(2-naphthoylamide)-2-pyridylmethyl)-N-(2-pyridylmethyl)amine (2), N,N-bis(6-(isobutyrylamide)-2-pyridylmethyl)-N-(2-pyridylmethyl)amine (3)); the crystal structures of the three compounds were established by X-ray crystallography. In variable-temperature (1)H NMR spectra of 1 and 2 in CD(3)CN solutions, the pi-pi stacking in 1 was too rigid to exhibit any fluxional motions in NMR measurements; however, the pi-pi stacking of 2 was weaker and showed fluxional behavior in nearly T-shaped pi-pi interaction for the 2-naphthly groups (DeltaH degrees = -2.3 kJ mol(-1); DeltaG degrees = -0.9 kJ mol(-1) and DeltaS degrees = -7.7 J mol(-1) K(-1) at 233 K in CD(3)CN). For each of these three complexes, one of the amide moieties coordinated to the Ru(II) center through an amide oxygen. The other uncoordinated amide N-H formed intramolecular hydrogen bonding which remained intact even in aqueous media, indicating the intramolecular hydrogen bonding was geometrically compelled to form. The amide coordination is also stabilized and strengthened by the hydrogen bonding, so that the structure of each compound is maintained in solution. It is suggested that this hydrogen bonding lowers the redox potentials of the Ru(II) centers due to polarization of the coordinated amide C=O bond, in which the oxygen atom becomes more electrostatically negative and its electron-donating ability is strengthened. The N-H protons in the coordinated amide moieties were found to undergo a reversible deprotonation-protonation process, and the redox potentials of the Ru(II) centers could be regulated in the range of 500 mV in CH(3)CN solutions. The Pourbaix diagram for 1 clearly showed that this proton-coupled redox behavior is a one-electron/one-proton process, and the pK(a) value was estimated to be approximately 6.     

Galactose oxidase models: tuning the properties of CuII-phenoxyl radicals

Four tripodal ligands with an N(3)O coordination sphere were synthesized: (2-hydroxy-3-tert-butyl-5-nitrobenzyl)bis(2-pyridylmethyl)amine (LNO(2)H), (2-hydroxy-3-tert-butyl-5- fluorobenzyl)bis(2-pyridylmethyl)amine (LFH), (2-hydroxy-3,5-di-tert-butylbenzyl)bis(2-pyridylmethyl)amine (LtBuH) and (2-hydroxy-3-tert-butyl-5-methoxybenzyl)bis(2-pyridylmethyl)amine (LOMeH). Their square-pyramidal copper(II) complexes, in which the phenol subunit occupies an axial position, were prepared and characterized by X-ray crystallography and UV/Vis and EPR spectroscopy. The phenolate moieties of the copper(II) complexes of LtBuH and LOMeH were electrochemically oxidized to phenoxyl radicals. These complexes are EPR-active (S=1), highly stable (k(decay)=0.008 min(-1) for [Cu(II)(LOMe(.))(CH(3)CN)](2+)) and stoichiometrically oxidise benzyl alcohol. Two additional tripodal ligands providing an N(2)O(2) coordination sphere were also studied: (2-pyridylmethyl)(2-hydroxy-3-tert-butyl-5-methoxybenzyl)(2-hydroxy-3-tert-butyl-5-nitrobenzyl)amine (L'OMeNO(2)H(2)) and (2-pyridylmethyl)bis(2-hydroxy-3-tert-butyl-5- methoxy)benzylamine (L'OMe(2)H(2)). Their copper(II) complexes were isolated as dimers ([Cu(2II)(L'OMe(2))(2)], [Cu(2II)(L'OMeNO(2))(2)]) that are converted to monomers on addition of pyridine. The complexes were investigated by X-ray crystallography and UV/Vis and EPR spectroscopy. Their one-electron electrochemical oxidation leads to copper(II)-phenoxyl systems that are less stable than those of the N(3)O complexes. The N(2)O(2) complexes are more reactive than the N(3)O analogues: they aerobically oxidize benzyl alcohol to benzaldehyde at a higher rate, as well as ethanol to acetaldehyde (40-80 turnovers).     

A sterically hindered N,N,O tripod ligand and its zinc complex chemistry

The new ligand bis(2-picolyl)(2-hydroxy-3,5-di-tert-butylbenzyl)amine (HL) was prepared from bis(2-picolyl)amine and 2,4-di-tert-butyl-6-(chloromethyl)phenol. It acts as a tetradentate N,N,O tripod ligand ensuring 5-fold coordination in all its zinc complexes L.Zn-X. The central complex of the series was [L.Zn(OH(2))]ClO(4) (1) obtained from zinc perchlorate. Together with the more labile complex L.Zn-C(2)H(5) (2), obtained from diethyl zinc, it was used as a starting material for ligand substitutions. In the presence of bases, 1 was converted to L.Zn-OH (3), [L.Zn(py)]ClO(4) (4), and [(L.Zn)(3)(mu(3)-CO(3))]ClO(4) (5). Metathetical reactions produced the neutral complexes L.Zn-X with X = Br (6), OAc (7), OC(6)H(5) (8), SC(6)H(5) (9), OP(O)(OPh)(2) (10), p-nitrophenolate (11), 1-methyluracilate (12), o-formylphenolate (13), and o-hydroxymethylphenolate (14). Structure determinations of 1, 5, 7, 10, 11, 13, and 14 confirmed the strictly monodentate attachment of all units X in L.Zn-X. The hydrolytic cleavage of tris(p-nitrophenyl) phosphate by 1 was investigated preparatively and kinetically. L.Zn-OH was found to be the hydrolytically active nucleophile. The second-order rate constant for the cleavage reaction was found to be slightly lower than the values for related systems, reflecting the steric hindrance in the tert-butyl-substituted ligand L.     

Efficient double-strand cleavage of DNA mediated by Zn(II)-based artificial nucleases

Two water-soluble zinc complexes, [Zn(L)Cl(2)] (1) and [Zn(2)(L)(2)(μ-C(2)O(4))(H(2)O)(2)]·(ClO(4))(2)·CH(3)OH (2) (L = N,N-bis(2-pyridylmethyl)methylamine), were prepared to serve as nuclease mimics. The complexes were characterized by X-ray, IR and UV-vis spectroscopy as well as ESI-MS. The electrospray mass spectrum of 2 in solution indicates that dinuclear ion [Zn(2)(L)(2)(μ-C(2)O(4))(ClO(4))](+) (3) is the active species. UV-Vis absorption and fluorescence spectroscopy studies show that the complexes partially intercalate to CT-DNA. In the absence of reducing agent, supercoiled plasmid DNA cleavage by the complexes 1 and 3 was performed and the hydrolytic mechanism was demonstrated by adding standard radical scavengers.     

Mono- and dinuclear zinc complexes derived from unsymmetric binucleating ligands: synthesis, characterization, and formation of tetranuclear arrays

Zinc complexes of the unsymmetric, binucleating Schiff base ligands 3-(N-[2-(dimethylamino)ethyl]iminomethyl)-salicylic acid (H2L1) and 3-[N-(2-pyridylmethyl)iminomethyl]-salicylic acid (H2L2) have been studied in the solid state as well as in solution. Reaction of ZnX2 (X = NO3-, CH3CO2-) with 3-formylsalicylic acid and N,N-dimethylethylenediamine at neutral or slightly acidic pH afforded the dinuclear complexes [Zn2(HL1)2(H2O)2](NO3)2.2H2O (1a) and [Zn2(HL1)2(CH3CO2)2].6H2O (1b). The Zn ions, which are 3.126(1) A (1a) and 3.2665(7) A (1b) apart, are bridged by two phenolate oxygens. Further coordination sites of the ligand are the imine nitrogen and carboxylate oxygen, while the amino nitrogen is protonated. On dissolution in DMSO or DMF, 1a and 1b are converted into the mononuclear species [Zn(HL1)]+. Cleavage of the dinuclear complexes is accompanied by migration of the ammonium proton to the carboxylate group and coordination of the amino nitrogen to Zn. Reaction of 1b with base yielded the novel tetranuclear Zn complex [Zn4(L1)4].6.5H2O (2) that exhibits coordination number asymmetry. The four Zn ions having N2O3 and N2O4 coordination environments are located at the corners of a nearly square-planar rectangle. H2L2 binds Zn via the phenolate oxygen and, imine and pyridine nitrogens in acidic solution. Deprotonation of the carboxyl group in alkaline solution gave the tetranuclear compound [Zn4(L2)4].4.5H2O (4) with a cubane-like Zn4O4 core.     

Efficient and specific strand scission of DNA by a dinuclear copper complex: comparative reactivity of complexes with linked tris(2-pyridylmethyl)amine moieties

The compound [Cu(II)(2)(D(1))(H(2)O)(2)](ClO(4))(4) (D(1) = dinucleating ligand with two tris(2-pyridylmethyl)amine units covalently linked in their 5-pyridyl positions by a -CH(2)CH(2)- bridge) selectively promotes cleavage of DNA on oligonucleotide strands that extend from the 3' side of frayed duplex structures at a site two residues displaced from the junction. The minimal requirements for reaction include a guanine in the n (i.e. first unpaired) position of the 3' overhang adjacent to the cleavage site and an adenine in the n position on the 5' overhang. Recognition and strand scission are independent of the nucleobase at the cleavage site. The necessary presence of both a reductant and dioxygen indicates that the intermediate responsible for cleavage is produced by the activation of dioxygen by a copper(I) form of the dinuclear complex. The lack of sensitivity to radical quenching agents and the high level of site selectivity in scission suggest a mechanism that does not involve a diffusible radical species. The multiple metal center exhibits a synergy to promote efficient cleavage as compared to the action of a mononuclear analogue [Cu(II)(TMPA)(H(2)O)](ClO(4))(2) (TMPA = tris(2-pyridylmethyl)amine) and [Cu(OP)(2)](2+) (OP = 1,10-phenanthroline) at equivalent copper ion concentrations. The dinuclear complex, [Cu(II)(2)(D(1))(H(2)O)(2)](ClO(4))(4), is even capable of mediating efficient specific strand scission at concentrations where [Cu(OP)(2)](2+) does not detectably modify DNA. The unique coordination and reactivity properties of [Cu(II)(2)(D(1))(H(2)O)(2)](ClO(4))(4) are critical for its efficiency and site selectivity since an analogue, [Cu(II)(2)(DO)(Cl(2))](ClO(4))(2), where DO is a dinucleating ligand very similar to D(1), but with a -CH(2)OCH(2)- bridge, exhibits only nonselective cleavage of DNA. The differences in the reactivity of these two complexes with DNA and their previously established interaction with dioxygen suggest that specific strand scission is a function of the orientation of a reactive intermediate.     

Influence of the chelate ligand structure on the amide methanolysis reactivity of mononuclear zinc complexes

Zinc complexes of three new amide-appended ligands have been prepared and isolated. These complexes, [(dpppa)Zn](ClO4)2 (4(ClO4)2; dpppa = N-((N,N-diethylamino)ethyl)-N-((6-pivaloylamido-2-pyridyl)methyl)-N-((2-pyridyl)methyl)amine), [(bdppa)Zn](ClO4)2 (6(ClO4)2; bdppa = N,N-bis((N,N-diethylamino)ethyl)-N-((6-pivaloylamido-2-pyridyl)methyl)amine), and [(epppa)Zn](ClO4)2 (8(ClO4)2; epppa = N-((2-ethylthio)ethyl)-N-((6-pivaloylamido-2-pyridyl)methyl)-N-((2-pyridyl)methyl)amine), have been characterized by X-ray crystallography (4(ClO4)2 and 8(ClO4)2), 1H and 13C NMR, IR, and elemental analysis. Treatment of 4(ClO4)2 or 8(ClO4)2 with 1 equiv of Me4NOH.5H2O in methanol-acetonitrile (5:3) results in amide methanolysis, as determined by the recovery of primary amine-appended forms of the chelate ligand following removal of the zinc ion. These reactions proceed via the initial formation of a deprotonated amide intermediate ([(dpppa-)Zn]ClO4 (5) and [(epppa-)Zn]ClO4 (9)) which in each case has been isolated and characterized (1H and 13C NMR, IR, elemental analysis). Treatment of 6(ClO4)2 with Me4NOH.5H2O in methanol-acetonitrile results in the formation of a deprotonated amide complex, [(bdppa-)Zn]ClO4 (7), which was isolated and characterized. This complex does not undergo amide methanolysis after prolonged heating in a methanol-acetonitrile mixture. Kinetic studies and construction of Eyring plots for the amide methanolysis reactions of 4(ClO4)2 and 8(ClO4)2 yielded thermodynamic parameters that provide a rationale for the relative rates of the amide methanolysis reactions. Overall, we propose that the mechanistic pathway for these amide methanolysis reactions involves reaction of the deprotonated amide complex with methanol to produce a zinc methoxide species, the reactivity of which depends, at least in part, on the steric hindrance imparted by the supporting chelate ligand. Amide methanolysis involving a zinc complex supported by a N2S2 donor chelate ligand (3(ClO4)2) is more complicated, as in addition to the formation of a deprotonated amide intermediate free chelate ligand is present in the reaction mixture.     

Substrate binding in catechol oxidase activity: biomimetic approach

A series of dicopper(II) complexes have been investigated as model systems for the catechol oxidase active site enzyme, regarding the binding of catechol substrate in the first step of the catalytic cycle. The [Cu(2)(L(R))(mu-OH)](ClO(4))(2) and [Cu(2)(L(R))(H(2)O)(2)](ClO(4))(3) complexes are based on the L(R) ligands (2,6-bis[(bis(2-pyridylmethyl)amino)methyl]-4-R-substituted phenol) with -R = -OCH(3), -CH(3), or -F. Binding studies of diphenol substrates were investigated using UV-vis and EPR spectroscopy, electrochemistry, and (19)F NMR (fluorinated derivatives). All the complexes are able to bind two ortho-diphenol substrates (tetrachlorocatechol and 3,5-di-tert-butylcatechol). Two successive fixation steps, respectively fast and slower, were evidenced for the mu-OH complexes (the bis(aqua) complexes are inactive in catalysis) by stopped-flow measurement and (19)F NMR. From the mu-OH species, the 1:1 complex/substrate adduct is the catalytically active form. In relation with the substrate specificity observed in the enzyme, different substrate/inhibitor combinations were also examined. These studies enabled us to propose that ortho-diphenol binds monodentately one copper(II) center with the concomitant cleavage of the OH bridge. This hydroxo ligand appears to be a key factor to achieve the complete deprotonation of the catechol, leading to a bridging catecholate.     

Amide hydrolysis reactivity of a N4O-ligated zinc complex: comparison of kinetic and themodynamic parameters with those of the corresponding amide methanolysis reaction

Treatment of the mononuclear amide-appended zinc complex [(ppbpa)Zn](ClO4)2 (1(ClO4)2) with Me4NOH.5H2O in CD3CN/D2O (3:1) results in the formation of the deprotonated amide species [(ppbpa-)Zn]ClO4 (2). Upon heating in CD3CN/D2O, this complex undergoes amide hydrolysis to produce a zinc carboxylate product, [(ambpa)Zn(O2CC(CH3)3)]ClO4 (3). X-ray crystallography, 1H and 13C NMR, IR, and elemental analysis were used to characterize 3. The hydrolysis reaction of 1(ClO4)2 exhibits saturation kinetic behavior with respect to the concentration of D2O. Variable-temperature kinetic studies of the amide hydrolysis reaction yielded DeltaH++ = 18.0(5) kcal/mol and DeltaS++ = -22(2) eu. These activation parameters are compared to those of the corresponding amide methanolysis reaction of 1(ClO4)2.     

Synthesis, X-ray crystal structures, and phosphate ester cleavage properties of bis(2-pyridylmethyl)amine copper(II) complexes with guanidinium pendant groups

Three new derivatives of bis(2-pyridylmethyl)amine (DPA) featuring ethylguanidinium (L (1)), propylguanidinium (L (2)), or butylguanidinium (L (3)) pendant groups have been prepared by the reaction of N, N- bis(2-pyridylmethyl)alkane-alpha,omega-diamines with 1 H-pyrazole-1-carboxamidine hydrochloride. The corresponding mononuclear copper(II) complexes were prepared by reacting the ligands with copper(II) nitrate and were isolated as [Cu(LH (+))(OH 2)](ClO 4) 3. xNaClO 4. yH 2O ( C1: L = L (1), x = 2, y = 3; C2: L = L (2), x = 2, y = 4; C3: L = L (3), x = 1, y = 0) following cation exchange purification. Recrystallization yielded crystals of composition [Cu(LH (+))(X)](ClO 4) 3.X ( C1': L = L (1), X = MeOH; C2': L = L (2), X = H 2O; C3': L = L (3), X = H 2O), which were suitable for X-ray crystallography. The crystal structures of C1', C2', and C3' indicate that the DPA moieties of the ligands coordinate to the copper(II) centers in a meridional fashion, with a water or methanol molecule occupying the fourth basal position. Weakly bound perchlorate anions located in the axial positions complete the distorted octahedral coordination spheres. The noncoordinating, monoprotonated guanidinium groups project away from the Cu(II)-DPA units and are involved in extensive charge-assisted hydrogen-bonding interactions with cocrystallized water/methanol molecules and perchlorate anions within the crystal lattices. The copper(II) complexes were tested for their ability to promote the cleavage of two model phosphodiesters, bis( p-nitrophenyl)phosphate (BNPP) and uridine-3'- p-nitrophenylphosphate (UpNP), as well as supercoiled plasmid DNA (pBR 322). While the presence of the guanidine pendants was found to be detrimental to BNPP cleavage efficiency, the functionalized complexes were found to cleave plasmid DNA and, in some cases, the model ribose phosphate diester, UpNP, at a faster rate than the parent copper(II) complex of DPA.     

Modeling substrate- and inhibitor-bound forms of liver alcohol dehydrogenase: chemistry of mononuclear nitrogen/sulfur-ligated zinc alcohol,formamide, and sulfoxide complexes

Using a mixed nitrogen/sulfur ligand possessing a single internal hydrogen bond donor (N,N-bis-2-(methylthio)ethyl-N-(6-amino-2-pyridylmethyl)amine (bmapa)), we prepared and structurally and spectroscopically characterized a series of zinc complexes possessing a single alcohol ([(bmapa)Zn(MeOH)](ClO(4))(2) (1)), formamide ([(bmapa)Zn(DMF)](ClO(4))(2) (3), [(bmapa)Zn(NMF)](ClO(4))(2) (4)), or sulfoxide ([(bmapa)Zn(DMSO)](ClO(4))(2) (7), [(bmapa)Zn(TMSO)](ClO(4))(2) (8)) ligand. X-ray crystallographic characterization was obtained for 1.MeOH, 3, 4, 7.DMSO, and 8. To enable studies of the influence of the single hydrogen bond donor amino group of the bmapa ligand on the chemistry of zinc/neutral oxygen donor binding interactions, analogous alcohol ([(bmpa)Zn(MeOH)](ClO(4))(2) (2)), formamide ([(bmpa)Zn(DMF)](ClO(4))(2) (5), [(bmpa)Zn(NMF)](ClO(4))(2) (6)), and sulfoxide ([(bmpa)Zn(DMSO)](ClO(4))(2) (9), [(bmpa)Zn(TMSO)](ClO(4))(2) (10)) complexes of the bmpa (N,N-bis-2-(methylthio)ethyl-N-(2-pyridylmethyl)amine) ligand system were generated and characterized. Of these, 2, 5, 6, and 9.2DMSO were characterized by X-ray crystallography. Solution spectroscopic methods ((1)H and (13)C NMR, FTIR) were utilized to examine the formamide binding properties of 3-6 in CH(3)CN and CH(3)NO(2) solutions. Conclusions derived from this work include the following: (1) the increased donicity of formamide and sulfoxide donors (versus alcohols) makes these competitive ligands for a cationic N/S-ligated zinc center, even in alcohol solution, (2) the inclusion of a single internal hydrogen bond donor, characterized by a heteroatom distance of approximately 2.80-2.95 A, produces subtle structural perturbations in N/S-ligated zinc alcohol, formamide, or sulfoxide complexes, (3) the heteroatom distance of a secondary hydrogen-bonding interaction involving the oxygen atom of a zinc-coordinated alcohol, formamide, and sulfoxide ligand is reduced with increasing donicity of the exogenous ligand, and (4) formamide displacement on a N/S-ligated zinc center is rapid, regardless of the presence of an internal hydrogen bond donor. These results provide initial insight into the chemical factors governing the binding of a neutral oxygen donor to a N/S-ligated zinc center.     

Characterization of imidazolate-bridged dinuclear and mononuclear hydroperoxo complexes

Dinucleating ligands having two metal-binding sites bridged by an imidazolate moiety, Hbdpi, HMe(2)bdpi, and HMe(4)bdpi (Hbdpi = 4,5-bis(di(2-pyridylmethyl)aminomethyl)imidazole, HMe(2)bdpi = 4,5-bis((6-methyl-2-pyridylmethyl)(2-pyridylmethyl)aminomethyl)imidazole, HMe(4)bdpi = 4,5-bis(di(6-methyl-2-pyridylmethyl)aminomethyl)imidazole), have been designed and synthesized as model ligands for copper-zinc superoxide dismutase (Cu,Zn-SOD). The corresponding mononucleating ligands, MeIm(Py)(2), MeIm(Me)(1), and MeIm(Me)(2) (MeIm(Py)(2) = (1-methyl-4-imidazolylmethyl)bis(2-pyridylmethyl)amine, MeIm(Me)(1) = (1-methyl-4-imidazolylmethyl)(6-methyl-2-pyridylmethyl)(2-pyridylmethyl)amine, MeIm(Me)(2) = (1-methyl-4-imidazolyl-methyl)bis(6-methyl-2-pyridylmethyl)amine), have also been synthesized for comparison. The imidazolate-bridged Cu(II)-Cu(II) homodinuclear complexes represented as [Cu(2)(bdpi)(CH(3)CN)(2)](ClO(4))(3).CH(3)CN.3H(2)O (1), [Cu(2)(Me(2)bdpi)(CH(3)CN)(2)](ClO(4))(3) (2), [Cu(2)(Me(4)bdpi)(H(2)O)(2)](ClO(4))(3).4H(2)O (3), a Cu(II)-Zn(II) heterodinuclear complex of the type of [CuZn(bdpi)(CH(3)CN)(2)](ClO(4))(3).2CH(3)CN (4), Cu(II) mononuclear complexes of [Cu(MeIm(Py)(2))(CH(3)CN)](ClO(4))(2).CH(3)CN (5), [Cu(MeIm(Me)(1))(CH(3)CN)](ClO(4))(2)( )()(6), and [Cu(MeIm(Me)(2))(CH(3)CN)](ClO(4))(2)( )()(7) have been synthesized and the structures of complexes 5-7 determined by X-ray crystallography. The complexes 1-7 have a pentacoordinate structure at each metal ion with the imidazolate or 1-methylimidazole nitrogen, two pyridine nitrogens, the tertiary amine nitrogen, and a solvent (CH(3)CN or H(2)O) which can be readily replaced by a substrate. The reactions between complexes 1-7 and hydrogen peroxide (H(2)O(2)) in the presence of a base at -80 degrees C yield green solutions which exhibit intense bands at 360-380 nm, consistent with the generation of hydroperoxo Cu(II) species in all cases. The resonance Raman spectra of all hydroperoxo intermediates at -80 degrees C exhibit a strong resonance-enhanced Raman band at 834-851 cm(-1), which shifts to 788-803 cm(-1) (Deltanu = 46 cm(-1)) when (18)O-labeled H(2)O(2) was used, which are assigned to the O-O stretching frequency of a hydroperoxo ion. The resonance Raman spectra of hydroperoxo adducts of complexes 2 and 6 show two Raman bands at 848 (802) and 834 (788), 851 (805), and 835 (789) cm(-1) (in the case of H(2)(18)O(2), Deltanu = 46 cm(-1)), respectively. The ESR spectra of all hydroperoxo complexes are quite close to those of the parent Cu(II) complexes except 6. The spectrum of 6 exhibits a mixture signal of trigonal-bipyramid and square-pyramid which is consistent with the results of resonance Raman spectrum.     

Cobalt(III) carbonate and bicarbonate chelate complexes of tripodal tetraamine ligands containing pyridyl donors: the steric basis for the stability of chelated bicarbonate complexes

The synthesis and characterization (X-ray crystallography, UV/vis spectroscopy, electrochemistry, ESI-MS, and (1)H, (13)C, and (59)Co NMR) of the complexes [Co(L)(O(2)CO)]ClO(4)xH(2)O (L = tpa (tpa = tris(2-pyridylmethyl)amine) (x = 1), pmea (pmea = bis((2-pyridyl)methyl)-2-((2-pyridyl)ethyl)amine) (x = 0), pmap (pmap = bis(2-(2-pyridyl)ethyl)(2-pyridylmethyl)amine) (x = 0), tepa (tepa = tris(2-(2-pyridyl)ethyl)amine) (x = 0)) which contain tripodal tetradentate pyridyl ligands and chelated carbonate ligands are reported. The complexes display different colors in both the solid state and solution, which can be rationalized in terms of the different ligand fields exerted by the tripodal ligands. Electrochemical data show that [Co(tepa)(O(2)CO)](+) is the easiest of the four complexes to reduce, and the variation in E(red.) values across the series of complexes can also be explained in terms of the different ligand fields exerted by the tripodal ligands, as can the (59)Co NMR data which show a chemical shift range of over 2000 ppm for the four complexes. [Co(pmea)(O(2)CO)](+) is fluxional in aqueous solution, and VT NMR spectroscopy ((1)H and (13)C) in DMF-d(7) (DMF = dimethylformamide) over the temperature range -25.0 to 75.0 degrees C are consistent with inversion of the unique six-membered chelate ring. This process shows a substantial activation barrier (DeltaG(#) = 58 kJ mol(-1)). The crystal structures of [Co(tpa)(O(2)CO)]ClO(4)xH(2)O, [Co(pmea)(O(2)CO)]ClO(4).3H(2)O, [Co(pmap)(O(2)CO)]ClO(4), and [Co(tepa)(O(2)CO)]ClO(4) are reported, and the complexes containing the asymmetric tripodal ligands pmea and pmap both crystallize as the 6-isomer. The carbonate complexes all show remarkable stability in 6 M HCl solution, with [Co(pmap)(O(2)CO)](+) showing essentially no change in its UV/vis spectrum over 4 h in this medium. The chelated bicarbonate complexes [Co(pmea)(O(2)COH)]ZnCl(4), [Co(pmap)(O(2)COH)][Co(pmap)(O(2)CO)](ClO(4))(3), [Co(pmap)(O(2)COH)]ZnCl(4)xH(2)O, and [Co(pmap(O(2)COH)]ZnBr(4)x2H(2)O can be isolated from acidic aqueous solution, and the crystal structure of [Co(pmap)(O(2)COH)]ZnCl(4)x3H(2)O is reported. The stability of the carbonate complexes in acid is explained by analysis of the crystallographic data for these, and other slow to hydrolyze chelated carbonate complexes, which show that the endo (coordinated) oxygen atoms are significantly hindered by atoms on the ancillary ligands, in contrast to complexes such as [Co(L)(O(2)CO)](+) (L = (NH(3))(4), (en)(2), tren, and nta), which undergo rapid acid hydrolysis and which show no such steric hindrance.     

Synthesis and characterization of mononuclear zinc aryloxide complexes supported by nitrogen/sulfur ligands possessing an internal hydrogen bond donor

Treatment of a dinuclear zinc hydroxide complex ([(bmnpaZn)(2)(mu-OH)(2)](ClO(4))(2) (1) or [(benpaZn)(2)(mu-OH)(2)](ClO(4))(2) (2)) with excess equivalents of an aryl alcohol derivative (p-HOC(6)H(4)X; X = NO(2), CHO, CN, COCH(3), Br, H, OCH(3)) yielded the nitrogen/sulfur-ligated zinc aryloxide complexes [(bmnpa)Zn(p-OC(6)H(4)NO(2))](ClO(4)) (3), [(benpa)Zn(p-OC(6)H(4)NO(2))](ClO(4)) (4), [(benpa)Zn(p-OC(6)H(4)CHO)](ClO(4)) (5), [(benpa)Zn(p-OC(6)H(4)CN)](ClO(4)) (6), [(benpa)Zn(p-OC(6)H(4)COCH(3))](ClO(4)) x 0.5H(2)O (7), [(benpa)Zn(p-OC(6)H(4)Br)](ClO(4)) (8), [(benpa)Zn(p-OC(6)H(5))](ClO(4)) (9), and [(benpa)Zn(p-OC(6)H(5)OCH(3))](ClO(4)) (10). The solid state structures of 2, 3, 5, and 6 have been determined by X-ray crystallography. While 3 and 6 exhibit a mononuclear zinc ion possessing a distorted five-coordinate trigonal bipyramidal geometry, in 5 each zinc center exhibits a distorted six-coordinate octahedral geometry resulting from coordination of the aldehyde carbonyl oxygen of another zinc-bound aryloxide ligand, yielding a chain-type structure. Zinc coordination of the aldehyde carbonyl of 5 is indicated by a large shift (>40 cm(-)(1)) to lower energy of the carbonyl stretching vibration (nu(C[double bond]O) in solid state FTIR spectra of the complex. In the solid state structures of 3, 5, and 6, a hydrogen-bonding interaction is found between N(3)-H of the supporting bmnpa/benpa ligand and the zinc-bound oxygen atom of the aryloxide ligand (N(3)...O(1) approximately 2.78 A). Solution (1)H and (13)C NMR spectra of 3-10 in CD(3)CN and FTIR spectra in CH(3)CN are consistent with all of the aryloxide complexes having a similar solution structure, with retention of the hydrogen-bonding interaction involving N(3)-H and the oxygen atom of the zinc-coordinated aryloxide ligand. For this family of zinc aryloxide complexes, a correlation was discovered between the chemical shift position of the N(3)-H proton resonance and the pK(a) of the parent aryl alcohol. This correlation indicates that the strength of the hydrogen-bonding interaction involving the zinc-bound aryloxide oxygen is increasing as the aryloxide moiety increases in basicity.     

Cobalt(II) and cobalt(III) complexes of thioether-containing hexadentate pyrazine amide ligands: C-S bond cleavage and cyclometallation reaction

Anaerobic reaction of Co(O2CMe)2.4H2O with the thioether-containing acyclic pyrazine amide hexadentate ligand 1,4-bis[o-(pyrazine-2-carboxamidophenyl)]-1,4-dithiobutane (H2L1) (-CH2CH2- spacer between the two pyrazine amide tridentate coordination units) furnishes [CoII(L1)].MeOH (1a) having CoN2(pyrazine)N'2(amide)S2(thioether) coordination. It exhibits an eight-line EPR spectrum, attesting to a low-spin (S = 1/2) state of CoII. A similar reaction in air, however, furnishes [CoIII(L3a)(L3b)].2MeOH (2a) (S = 0), resulting from a C-S bond cleavage reaction triggered by an acetate ion as a base, having CoN2(pyrazine)N'2(amide)S(thioether)S'(thiolate) coordination. On the other hand, the reaction of Co(O2CMe)2.4H2O with 1,4-bis[o-(pyrazine-2-carboxamidophenyl)]-1,5-dithiopentane (H2) (-CH2CH2CH2- spacer between the two pyrazine amide tridentate coordination units) in air affords a cobalt(II) complex [CoII(L2)].MeOH (1b.MeOH) (S = 1/2); its structurally characterized variety has the composition 1b.C6H6. Interestingly, 1b.MeOH undergoes facile metal-centred oxidation by aerial O2-H2O2-[Fe(eta5-C5H5)2][PF6], which led to the isolation of the corresponding cobalt(iii) complex [CoIII(L2)][ClO4] (2b). When treated with methanolic KOH, 2b affords a low-spin (S = 0) organocobalt(III) complex [Co(III)((L2')] (3). Structures of all complexes, except 1a, have been authenticated by X-ray crystallography. A five-membered chelate-ring forming ligand L1(2-) effects C-S bond cleavage and a six-membered chelate-ring forming ligand L2(2-) gives rise to Co-C bond formation, in cobalt(III)-coordinated thioether functions due to alpha C-H bond activation by the base. A rationale has been provided for the observed difference in the reactivity properties. The spectroscopic properties of the complexes have also been investigated. Cyclic voltammetry experiments in MeCN-CH2Cl2 reveal facile metal-centred reversible-to-quasireversible CoIV-CoIII (or a ligand-centred redox process; 2a), CoIII-CoII (1a, 1b.MeOH, 2a, 2b and 3), CoII-CoI (1a, 1b.MeOH, 2aand 2b), and CoI-Co0 (1a, 1b.MeOH and 2b) redox processes.