Rate constants and H atom branching ratios of the gas-phase reactions of methylidyne CH(X2Pi) radical with a series of alkanes

The reactions of the CH radical with several alkanes were studied, at room temperature, in a low-pressure fast-flow reactor. CH(X2Pi, v = 0) radicals were obtained from the reaction of CHBr(3) with potassium atoms. The overall rate constants at 300 K are (0.76 +/- 0.20) x 10(-10) [Fleurat-Lessard, P.; Rayez, J. C.; Bergeat, A.; Loison, J. C. Chem. Phys. 2002, 279, 87],1 (1.60 +/- 0.60) x 10(-10)[Galland, N.; Caralp, F.; Hannachi, Y.; Bergeat, A.; Loison, J.-C. J. Phys. Chem. A 2003, 107, 5419],2 (2.20 +/- 0.80) x 10(-10), (2.80 +/- 0.80) x 10(-10), (3.20 +/- 0.80) x 10(-10), (3.30 +/- 0.60) x 10(-10), and (3.60 +/- 0.80) x 10(-10) cm3 molecule(-1) s(-1), (errors refer to +/-2sigma) for methane, ethane, propane, n-butane, n-pentane, neo-pentane, and n-hexane respectively. The experimental overall rate constants correspond to those obtained using a simple classical capture theory. Absolute atomic hydrogen production was determined by V.U.V. resonance fluorescence, with H production from the CH + CH4 reaction being used as a reference. Observed H branching ratios were for CH4, 1.00[Fleurat-Lessard, P.; Rayez, J. C.; Bergeat, A.; Loison, J. C. Chem. Phys. 2002, 279, 87];1 C(2)H(6), 0.22 +/- 0.08 [Galland, N.; Caralp, F.; Hannachi, Y.; Bergeat, A.; Loison, J.-C. J. Phys. Chem. A 2003, 107, 5419];2 C(3)H(8), 0.19 +/- 0.07; C(4)H(10) (n-butane), 0.14 +/- 0.06; C(5)H(12) (n-pentane), 0.52 +/- 0.08; C(5)H(12) (neo-pentane), 0.51 +/- 0.08; C(5)H(12) (iso-pentane), 0.12 +/- 0.06; C(6)H(14) (n-hexane), 0.06 +/- 0.04.     

Study on the reaction of CH2 with H2 at high temperature

Thermal decomposition of CH(2)I(2) [sequential C-I bond fission processes, CH(2)I(2) + Ar → CH(2)I + I + Ar (1a) and CH(2)I + Ar → (3)CH(2) + I + Ar (1b)], and the reactions of (3)CH(2) + H(2) → CH(3) + H (2) and (1)CH(2) + H(2) → CH(3) + H (3) have been studied by using atomic resonance absorption spectrometry (ARAS) of I and H atoms behind reflected shock waves. Highly diluted CH(2)I(2) (0.1-0.4 ppm) with/without excess H(2) (300 ppm) in Ar has been used so that the effect of the secondary reactions can be minimized. From the quantitative measurement of I atoms in the 0.1 ppm CH(2)I(2) + Ar mixture over 1550-2010 K, it is confirmed that two-step sequential C-I bond fission processes of CH(2)I(2), (1a) and (1b), dominate over other product channels. The decomposition step (1b) is confirmed to be the rate determining process to produce (3)CH(2) and the least-squares analysis of the measured rate gives, ln(k(1b)/cm(3) molecule(-1) s(-1)) = -(17.28 ± 0.79) - (30.17 ± 1.40) × 10(3)/T. By utilizing this result, we examine reactions 2 and 3 by monitoring evolution of H atoms in the 0.2-0.4 ppm CH(2)I(2) + 300 ppm H(2) mixtures over 1850-2040 K. By using a theoretical result on k(2) (Lu, K. W.; Matsui, H.; Huang, C.-L.; Raghunath, P.; Wang, N.-S.; Lin, M. C. J. Phys. Chem. A 2010, 114, 5493), we determine the rate for (3) as k(3)/cm(3) molecule(-1) s(-1) = (1.27 ± 0.36) × 10(-10). The upper limit of k(3) (k(3max)) is also evaluated by assuming k(2) = 0, i.e., k(3max)/cm(3) molecule(-1) s(-1) = (2.26 ± 0.59) × 10(-10). The present experimental results on k(3) and k(3max) is found to agree very well with the previous frequency modulation spectroscopy study (Friedrichs, G.; Wagner, H. G. Z. Phys. Chem. 2001, 215, 1601); i.e., the importance of the contribution of (1)CH(2) in the reaction of CH(2) with H(2) at elevated temperature range is reconfirmed.     

Temperature and pressure dependence of the rate constants of the reaction of NO3 radical with CH3SCH3

The reaction of nitrate radical with dimethyl sulfide was studied with cavity ring-down spectroscopy in 20-200 Torr of N2 diluent in the temperature range of 283-318 K. The rate constant for this reaction, k(1), is found to be temperature dependent and pressure independent: k1 = 4.5(-2.8)(+4.0) x 10(-13) exp[(310 +/- 220)/T] cm3 molecule(-1) s(-1). The uncertainties are two standard deviations from regression analyses. The present rate constants are in good agreement with those reported by Daykin and Wine (Int. J. Chem. Kinet. 1990, 22, 1083) and may be used in the atmospheric model calculation. Theoretical calculations were carried out to verify the existence of an intermediate complex.     

CH(A2Delta) Formation in hydrocarbon combustion: the temperature dependence of the rate constant of the reaction C2H + O2--> CH(A2Delta) + CO2

The temperature dependence of the rate constant of the chemiluminescence reaction C2H + O2 --> CH(A) + CO2, k1e, has been experimentally determined over the temperature range 316-837 K using pulsed laser photolysis techniques. The rate constant was found to have a pronounced positive temperature dependence given by k1e(T) = AT(4.4) exp(1150 +/- 150/T), where A = 1 x 10(-27) cm(3) s(-1). The preexponential factor for k1e, A, which is known only to within an order of magnitude, is based on a revised expression for the rate constant for the C2H + O(3P) --> CH(A) + CO reaction, k2b, of (1.0 +/- 0.5) x 10(-11) exp(-230 K/T) cm3 s(-1) [Devriendt, K.; Van Look, H.; Ceursters, B.; Peeters, J. Chem. Phys. Lett. 1996, 261, 450] and a k2b/k1e determination of this work of 1200 +/- 500 at 295 K. Using the temperature dependence of the rate constant k1e(T)/k1e(300 K), which is much more accurately and precisely determined than is A, we predict an increase in k(1e) of a factor 60 +/- 16 between 300 and 1500 K. The ratio of rate constants k2b/k1e is predicted to change from 1200 +/- 500 at 295 K to 40 +/- 25 at 1500 K. These results suggest that the reaction C2H + O2 --> CH(A) + CO2 contributes significantly to CH(A-->X) chemiluminescence in hot flames and especially under fuel-lean conditions where it probably dominates the reaction C2H + O(3P) --> CH(A) + CO.     

Path integral calculation of thermal rate constants within the quantum instanton approximation: application to the H + CH4 --> H2 + CH3 hydrogen abstraction reaction in full Cartesian space

The quantum instanton approximation for thermal rate constants of chemical reactions [Miller, Zhao, Ceotto, and Yang, J. Chem. Phys. 119, 1329 (2003)], which is modeled after the earlier semiclassical instanton approach, is applied to the hydrogen abstraction reaction from methane by a hydrogen atom, H + CH4 --> H2 + CH3, using a modified and recalibrated version of the Jordan-Gilbert potential surface. The quantum instanton rate is evaluated using path integral Monte Carlo approaches based on the recently proposed implementation schemes [Yamamoto and Miller, J. Chem. Phys. 120, 3086 (2004)]. The calculations were carried out using the Cartesian coordinates of all the atoms (thus involving 18 degrees of freedom), thereby taking explicit account of rotational effects of the whole system and also allowing the equivalent treatment of the four methane hydrogens. To achieve such a treatment, we present extended forms of the path integral estimators for relevant quantities that may be used for general N-atom systems with any generalized reaction coordinates. The quantum instanton rates thus obtained for the temperature range T = 200-2000 K show good agreement with available experimental data, which gives support to the accuracy of the underlying potential surface used.     

Rate constants and hydrogen isotope substitution effects in the CH3 + HCl and CH3 + Cl2 reactions

The kinetics of the CH3 + Cl2 (k2a) and CD3 + Cl2 (k2b) reactions were studied over the temperature range 188-500 K using laser photolysis-photoionization mass spectrometry. The rate constants of these reactions are independent of the bath gas pressure within the experimental range, 0.6-5.1 Torr (He). The rate constants were fitted by the modified Arrhenius expression, k2a = 1.7 x 10(-13)(T/300 K)(2.52)exp(5520 J mol(-1)/RT) and k2b = 2.9 x 10(-13)(T/300 K)(1.84)exp(4770 J mol(-1)/RT) cm(3) molecule(-1) s(-1). The results for reaction 2a are in good agreement with the previous determinations performed at and above ambient temperature. Rate constants of the CH3 + Cl2 and CD3 + Cl2 reactions obtained in this work exhibit minima at about 270-300 K. The rate constants have positive temperature dependences above the minima, and negative below. Deuterium substitution increases the rate constant, in particular at low temperatures, where the effect reaches ca. 45% at 188 K. These observations are quantitatively rationalized in terms of stationary points on a potential energy surface based on QCISD/6-311G(d,p) geometries and frequencies, combined with CCSD(T) energies extrapolated to the complete basis set limit. 1D tunneling as well as the possibility of the negative energies of the transition state are incorporated into a transition state theory analysis, an approach which also accounts for prior experiments on the CH3 + HCl system and its various deuterated isotopic substitutions [Eskola, A. J.; Seetula, J. A.; Timonen, R. S. Chem. Phys. 2006, 331, 26].     

Three-dimensional 13C-detected CH3-TOCSY using selectively protonated proteins: facile methyl resonance assignment and protein structure determination

Recent advances in instrumentation and isotope labeling methodology allow proteins up to 100 kDa in size to be studied in detail using NMR spectroscopy. Using 2H/13C/15N enrichment and selective methyl protonation, we show that newly developed 13C direct detection methods can be used to rapidly yield proton and carbon resonance assignments for the methyl groups of Val, Leu, and Ile residues. We present a highly sensitive 13C-detected CH3-TOCSY experiment that, in combination with standard 1H-detected backbone experiments, allows the full assignment of side chain resonances in methyl-protonated residues. Selective methyl protonation, originally developed by Kay and co-workers (Rosen, M. K.; Gardner, K. H.; Willis, R. C.; Parris, W. E.; Pawson, T.; Kay, L. E. J. Mol. Biol. 1996, 263, 627-636; Gardner, K. G.; Kay, L. E. Annu. Rev. Biophys. Biomol. Struct. 1998, 27, 357-406; Goto, N. K.; Kay, L. E. Curr. Opin. Struct. Biol. 2000, 10, 585-592), improves the nuclear relaxation behavior of larger proteins compared to their fully protonated counterparts, allows significant simplification of spectra, and facilitates NOE assignments. Here, we demonstrate the usefulness of the 13C-detected CH3-TOCSY experiment through studies of (i) a medium-sized protein (CbpA-R1; 14 kDa) with a repetitive primary sequence that yields highly degenerate NMR spectra, and (ii) a larger, bimolecular protein complex (p21-KID/Cdk2; 45 kDa) at low concentration in a high ionic strength solution. Through the analysis of NOEs involving amide and Ile, Leu, and Val methyl protons, we determined the global fold of CbpA-R1, a bacterial protein that mediates the pathogenic effects of Streptococcus pneumoniae, demonstrating that this approach can significantly reduce the time required to determine protein structures by NMR.     

Experimental and chemical kinetic modeling study of 3-pentanone oxidation

Shock tube ignition delay times have been measured for 3-pentanone at a reflected shock pressure of 1 atm (±2%), in the temperature range 1250-1850 K, at equivalence ratios of 0.5-2.0 for O(2) mixtures in argon with fuel concentrations varying from 0.875 to 1.3125%. Laminar flame speeds have also been measured at an initial pressure of 1 atm over an equivalence ratio range. Complementary to previous studies [Pichon S., Black, G., Chaumeix, N., Yahyaoui, M., Simmie, J. M., Curran, H. J., Donohue, R. Combust. Flame, 2009, 156, 494-504; Serinyel, Z.; Black, G.; Curran, H. J.; Simmie, J. M. Combustion Sci. Tech., 2010, 182, 574-587], laminar flame speeds of 2-butanone have also been measured, and relative reactivities of these ketones have been compared and discussed. A chemical kinetic submechanism describing the oxidation of 3-pentanone has been developed and detailed in this paper; rate constants for unimolecular fuel decomposition reactions have been treated for falloff in pressure with nine-parameter fits using the Troe Formulism. Both compounds treated in this work may be used as fuel tracers, thus further ignition delay time measurements have been carried out by adding 3-pentanone to n-heptane in order to test the effect of the blend on ignition delay timing. It was found that the autoignition characteristics of n-heptane remained unaffected in the presence of 15% 3-pentanone in the fuel, consistent with results obtained using acetone and 2-butanone [Pichon S., Black, G., Chaumeix, N., Yahyaoui, M., Simmie, J. M., Curran, H. J., Donohue, R. Combust. Flame, 2009, 156, 494-504; Serinyel, Z.; Black, G.; Curran, H. J.; Simmie, J. M. Combustion Sci. Tech., 2010, 182, 574-587].     

Reactive intermediates relevant to the carbonylation of CH(3)Mn(CO)(5). Activation parameters for key dynamic processes

Reported is a time-resolved infrared and optical kinetics investigation of the transient species CH(3)C(O)Mn(CO)(4) (I(Mn)) generated by flash photolysis of the acetyl manganese pentacarbonyl complex CH(3)C(O)Mn(CO)(5) (A(Mn)) in cyclohexane and in tetrahydrofuran. Activation parameters were determined for CO trapping of I(Mn) to regenerate A(Mn) (rate = k(CO) [CO][I(Mn)]) as well as the methyl migration pathway to form methylmanganese pentacarbonyl CH(3)Mn(CO)(5) (M(Mn)) (rate = k(M)[I(Mn)]). These values were Delta H(++)(CO) = 31 +/- 1 kJ mol(-1), Delta S(++)(CO) = -64 +/- 3 J mol(-1) K(-1), Delta H(++)(M) = 35 +/- 1 kJ mol(-1), and Delta S(++)(M) = -111 +/- 3 J mol(-1) K(-1). Substantially different activation parameters were found for the methyl migration kinetics of I(Mn) in THF solutions where Delta H(++)(M) = 68 +/- 4 kJ mol(-1) and Delta S(++)(M) = 10 +/- 10 J mol(-1) K(-1), consistent with the earlier conclusion (Boese, W. T.; Ford, P. C. J. Am. Chem. Soc. 1995, 117, 8381-8391) that the composition of I(Mn) is different in these two media. The possible isotope effect on k(M) was also evaluated by studying the intermediates generated from flash photolysis of CD(3)C(O)Mn(CO)(5) in cyclohexane, but this was found to be nearly negligible (k(M)(h)/k(M)(d) (298 K) = 0.97 +/- 0.05, Delta H(++)(M)(d) = 37 +/- 4 kJ mol(-1), and Delta S(++)(M)(d) = -104 +/- 12 J mol(-1) K(-1)). The relevance to the migratory insertion mechanism of CH(3)Mn(CO)(5), a model for catalytic carbonylations, is discussed.     

Formation of abundant [Pb(H2O)]2+ by ligand-exchange reaction between [Pb(N2)n]2+ (n = 1-3) and H2O

Doubly charged lead monohydrate, [Pb(H2O)]2+, was predicted to be unstable in the gas phase, but it has recently been observed to form in low yield via ligand change between [Pb(CH3CN)]2+ and H2O [Shi, T.; Orlova, G.; Guo, J.; Bohme, D. K.; Hopkinson, A. C.; Siu, K. W. M. J. Am. Chem. Soc. 2004, 126, 7975-7980]. Here we report that abundant [Pb(H2O)]2+ is formed in the gas phase by ligand-exchange reaction between [Pb(N2)n]2+ (n = 1-3) and water after collisional activation. Density functional theory has been used to examine the ligand-exchange reaction profile. A comparison of the potential-energy surfaces between [Pb(N2)]2+ and [Pb(CH3CN)]2+ reacting with H2O provides strong evidence that the ligand-exchange reaction of [Pb(N2)]2+ with H2O to form [Pb(H2O)]2+ is more efficient than that of [Pb(CH3CN)]2+ with H2O.     

Spontaneous hydrolysis of ethyl formate: Isobaric activation parameters

Ethyl formate undergoes spontaneous autocatalytic hydrolysis via water catalyzed (neutral), as well as hydrogen‐ion catalyzed mechanisms. The activation parameters for the neutral reaction are ΔH‡ = 91 ± 8 kJ/mol and ΔS‡ = −48 ± 8 J K⁻¹/mol. This result is in contrast to the values reported in the hydrolyses of the more polar activated haloesters. The specific rate of neutral hydrolysis of ethyl acetate can also be predicted. © 2000 John Wiley & Sons, Inc. Int J Chem Kinet 32: 67–71, 2000     

Letter to the editor: Electronic data formats for open storage of published chemical kinetic data

In support of the Editor's goal of providing open storage of chemical kinetic data published in the International Journal of Chemical Kinetics, we propose the adoption of XML formats from PrIMe ( www.primekinetics.org ) for species identification and thermochemical data, and of Chemical Markup Language (CML) for three‐dimensional molecular geometries. Examples are provided in the online supplemental material of an article in this issue (Snitsiriwat, S.; Asatryan, R.; Bozzelli, J. W. Int J Chem Kinet 2010, 42, 181–199). We invite the input and assistance of the international chemical kinetics community in developing and refining these standards. © 2010 Wiley Periodicals, Inc. Int J Chem Kinet 42: 200–201, 2010     

Structural and spectroscopic features of a cis (hydroxo)-Fe(III)-(carboxylato) configuration as an active site model for lipoxygenases

In our preliminary communication (Ogo, S.; Wada, S.; Watanabe, Y.; Iwase, M.; Wada, A.; Harata, M.; Jitsukawa, K.; Masuda, H.; Einaga, H. Angew. Chem., Int. Ed. 1998, 37, 2102-2104), we reported the first example of X-ray analysis of a mononuclear six-coordinate (hydroxo)iron(III) non-heme complex, [Fe(III)(tnpa)(OH)(RCO(2))]ClO(4) [tnpa = tris(6-neopentylamino-2-pyridylmethyl)amine; for 1, R = C(6)H(5)], which has a characteristic cis (hydroxo)-Fe(III)-(carboxylato) configuration that models the cis (hydroxo)-Fe(III)-(carboxylato) moiety of the proposed (hydroxo)iron(III) species of lipoxygenases. In this full account, we report structural and spectroscopic characterization of the cis (hydroxo)-Fe(III)-(carboxylato) configuration by extending the model complexes from 1 to [Fe(III)(tnpa)(OH)(RCO(2))]ClO(4) (2, R = CH(3); 3, R = H) whose cis (hydroxo)-Fe(III)-(carboxylato) moieties are isotopically labeled by (18)OH(-), (16)OD(-), (18)OD(-), (12)CH(3)(12)C(18)O(2)(-), (12)CH(3)(13)C(16)O(2)(-), (13)CH(3)(12)C(16)O(2)(-), (13)CH(3)(13)C(16)O(2)(-), and H(13)C(16)O(2)(-). Complexes 1-3 are characterized by X-ray analysis, IR, EPR, and UV-vis spectroscopy, and electrospray ionization mass spectrometry (ESI-MS).     

Do spin state changes matter in organometallic chemistry? A computational study

Spin changes occur often in organometallic chemistry, and their effect on kinetics is not well understood. We report computations on the singlet and triplet potential energy surfaces of several processes of this type and show that the topology of the individual surfaces, as well as of the crossing regions between them, can be used to rationalize the observed reactivity in all cases. In particular, the slow addition of dihydrogen to W[N(CH(2)CH(2)NSiMe(3))(3)]H (Schrock, R. R.; Shih, K. Y.; Dobbs, D. A.; Davis, W. M. J. Am. Chem. Soc. 1995, 117, 6609) is shown to be a "spin-blocked" reaction with a high barrier due to the crossing between reactant triplet and product singlet surfaces. In contrast, addition of CO to TpCo(CO) (Detrich, J. L.; Reinaud, O. M.; Rheingold, A. L.; Theopold, K. H. J. Am. Chem. Soc. 1995, 117, 11745) is fast because the triplet and singlet surfaces cross at low energy. Particular care is taken to use DFT methods which are in adequate agreement with experimental and high-level computational energetics for these systems.     

CH3 + Cl = CH3Cl: RRKM/master equation modeling

Data for the title reaction have been fitted using an RRKM/master equation approach. Energy transfer was modeled using an exponential decay with downward step sizes, ΔE_d, as a fitting parameter. The low temperature (200 < T (K) < 300) combination of CH₃ with Cl atoms in He can be accommodated with ΔE_d (cm^?1) = 400. Higher temperature (1600 < T (K) < 2100) decomposition in Ar required ΔE_d(T) (cm^?1) = 694(T/300)^0.46. Previous analysis of the analogous system CH₄ = CH₃ + H required ΔE_d(T) (cm^?1) = 100(T/300) for He and ΔE_d(T) (cm^?1) = 150(T/300) for Ar. Understanding of the magnitudes and temperature dependence of ΔE_d remains the greatest detriment to quantitative calculation, extrapolation, and prediction of unimolecular rate constants. © 2008 Wiley Periodicals, Inc. Int J Chem Kinet 41: 245–254, 2009     

Diminished cage effect in solid p-H2: Infrared absorption of CH3S observed from photolysis in situ of CH3SH, CH3SCH3, or CH3SSCH3 isolated in p-H2 matrices

We report the infrared absorption spectrum of the methylthio (or thiomethoxy) radical, CH(3)S (X (2)E(3/2)), produced via photodissociation in situ of three precursors CH(3)SH, CH(3)SCH(3), and CH(3)SSCH(3) isolated in solid p-H(2). The common absorption features observed with similar intensity ratios in each experiment are assigned to CH(3)S. The wavenumbers of these features agree satisfactorily with those predicted with a spin-vibronic Hamiltonian accounting for the anharmonic effects and the Jahn-Teller effects to the quartic term [A. V. Marenich and J. E. Boggs, J. Chem. Theory Comput. 1, 1162 (2005)]. In addition to an absorption line at 724.2?cm(-1), corresponding to a transition of 3(1) previously determined to be 727?cm(-1) from fluorescence spectra of gaseous CH(3)S, we identified fundamental transitions 6(1)(a(1)) at 771.1, 6(1)(e) at 1056.6, 5(1)(a(1)) at 1400.0, 4(1)(a(1)) at 2898.4?cm(-1), and several combination and overtone transitions. In contrast, photolysis of CH(3)SSCH(3) isolated in solid Ar produces mainly H(2)CS, CH(3)SH, and CS(2), but no CH(3)S. These results demonstrate the feasibility of using photolysis in situ of precursors isolated in solid p-H(2) to produce free radicals by taking advantage of the diminished cage effect of the matrix.     

Shock-tube study of the thermal decomposition of CH3CHO and CH3CHO + H reaction

The thermal decomposition of acetaldehyde, CH3CHO + M --> CH3 + HCO + M (eq 1), and the reaction CH3CHO + H --> products (eq 6) have been studied behind reflected shock waves with argon as the bath gas and using H-atom resonance absorption spectrometry as the detection technique. To suppress consecutive bimolecular reactions, the initial concentrations were kept low (approximately 10(13) cm(-3)). Reaction was investigated at temperatures ranging from 1250 to 1650 K at pressures between 1 and 5 bar. The rate coefficients were determined from the initial slope of the hydrogen profile via k1 = [CH3CHO]0(-1) x d[H]/dt, and the temperature dependences observed can be expressed by the following Arrhenius equations: k1(T, 1.4 bar) = 2.9 x 10(14) exp(-38 120 K/T) s(-1), k1(T, 2.9 bar) = 2.8 x 10(14) exp(-37 170 K/T) s(-1), and k1(T, 4.5 bar) = 1.1 x 10(14) exp(-35 150 K/T) s(-1). Reaction was studied with C2H5I as the H-atom precursor under pseudo-first-order conditions with respect to CH3CHO in the temperature range 1040-1240 K at a pressure of 1.4 bar. For the temperature dependence of the rate coefficient the following Arrhenius equation was obtained: k6(T) = 2.6 x 10(-10) exp(-3470 K/T) cm(3) s(-1). Combining our results with low-temperature data published by other authors, we recommend the following expression for the temperature range 300-2000 K: k6(T) = 6.6 x 10(-18) (T/K) (2.15) exp(-800 K/T) cm(3) s(-1). The uncertainties of the rate coefficients k1 and k6 were estimated to be +/-30%.     

Synthesis, crystal structure, spectral studies, and catechol oxidase activity of trigonal bipyramidal Cu(II) complexes derived from a tetradentate diamide bisbenzimidazole ligand

A new benzimidazole-based diamide ligand-N,N'-bis(glycine-2- benzimidazolyl)hexanediamide (GBHA)-has been synthesized and utilized to prepare Cu(II) complexes of general composition [Cu(GBHA)X]X, where X is an exogenous anionic ligand (X = Cl(-), NO(3)(-), SCN(-)). The X-ray structure of one of the complexes, [Cu(GBHA)Cl]Cl.H(2)O.CH(3)OH, has been obtained. The compound crystallizes in the monoclinic space group C2/c with unit cell dimensions a = 26.464(3) A, b = 10.2210(8) A, c = 20.444(2) A, alpha = 90 degrees, beta = 106.554(7) degrees, gamma = 90 degrees, V= 5300.7(9) A(3), and Z = 8. To the best of our knowledge, the [Cu(GBHA)Cl]Cl.H(2)O.CH(3)OH complex is the first structurally characterized mononuclear trigonal bipyramidal copper(II) bisbenzimidazole diamide complex having coordinated amide carbonyl oxygen. The coordination geometry around the Cu(II) ion is distorted trigonal bipyramidal (tau = 0.59). Two carbonyl oxygen atoms and a chlorine atom form the equatorial plane, while the two benzimidazole imine nitrogen atoms occupy the axial positions. The geometry of the Cu(II) center in the solid state is not preserved in DMSO solution, changing to square pyramidal, as suggested by the low-temperature EPR data g( parallel) > g( perpendicular) > 2.0023. All the complexes display a quasi-reversible redox wave due to the Cu(II)/Cu(I) reduction process. E(1/2) values shift anodically from Cl(-) < NO(3)(-) < SCN(-), indicating that the bound Cl(-) ion stabilizes the Cu(II) ion while the N-bonded SCN(-) ion destabilizes the Cu(II) state in the complex. When calculated against NHE, the redox potentials turn out to be quite positive as compared to other copper(II) benzimidazole bound complexes (Nakao, Y.; Onoda, M.; Sakurai, T.; Nakahara, A.; Kinoshita, L.; Ooi, S. Inorg. Chim. Acta 1988, 151, 55. Addison, A. W.; Hendricks, H. M. J.; Reedijk, J.; Thompson, L. K. Inorg. Chem. 1981, 20 (1), 103. Sivagnanam, U.; Palaniandavar, M. J. Chem. Soc., Dalton Trans. 1994, 2277. Palaniandavar, M.; Pandiyan, T.; Laxminarayan, M.; Manohar, H. J. Chem. Soc., Dalton Trans. 1995, 457. Sakurai, T.; Oi, H.; Nakahara, A. Inorg. Chim. Acta 1984, 92, 131). It is therefore concluded that binding of amide carbonyl oxygen destabilizes the Cu(II) state. The complex [Cu(II)(GBHA)(NO(3))](NO(3)) could be successfully reduced by the addition of dihydroxybenzenes to the corresponding [Cu(I)(GBHA)](NO(3)). (1)H NMR of the reduced complex shows slightly broadened and shifted (1)H signals. The reduction of the Cu(II) complex presumably occurs with the corresponding 2e(-) oxidation of the quinol to quinone. Such a conversion is reminiscent of the functioning of a copper-containing catechol oxidase from sweet potatoes and the met form of the enzyme tyrosinase.     

CF3 Rotation in 3-(Trifluoromethyl)phenanthrene: Solid State 19F and 1H NMR relaxation and Bloch-Wangsness-Redfield theory

We have observed and modeled the 1H and 19F solid-state nuclear spin relaxation process in polycrystalline 3-(trifluoromethyl)phenanthrene. The relaxation rates for the two spin species were observed from 85 to 300 K at the low NMR frequencies of omega/2pi = 22.5 and 53.0 MHz where CF3 rotation, characterized by a mean time tau between hops, is the only motion on the NMR time scale. All motional time scales (omegatau < 1, omegatau approximately 1, and omegatau > 1) are observed. The 1H spins are immobile on the NMR time scale but are coupled to the 19F spins via the unlike-spin dipole-dipole interaction. The temperature dependence of the observed relaxation rates (the relaxation is biexponential) shows considerable structure and a thorough analysis of Bloch-Wangsness-Redfield theory for this coupled spin system is provided. The activation energy for CF3 rotation is 11.5 +/- 0.7 kJ/mol, in excellent agreement with the calculation in a 13-molecule cluster provided in the companion paper where the crystal structure is reported and detailed ab initio electronic structure calculations are performed [Wang, X.; Mallory F. B.; Mallory, C. W; Beckmann, P. A.; Rheingold, A. L.; Francl, M. M J. Phys. Chem. A 2006, 110, 3954].