密度泛函理论研究香草醛与氨基硫脲的加成-缩合反应

针对氨基硫脲和香草醛亲核加成-缩合反应的反应物和生成物,用量子化学密度泛函方法在B3LYP/6-31G水平上进行几何优化,通过Mulliken电荷分析推测出香草醛具有较高的亲核加成反应活性.对优化后的构型进行振动分析,得到不同温度下反应物和生成物的热力学性质,据此计算出相应温度下的反应焓变、吉布斯自由能变和平衡常数.实验表明,在298K～1000K内,氨基硫脲与香草醛的亲核加成-缩合反应是一个放热反应,吉布斯自由能变成负值,平衡常数很大,说明反应在温和条件下即能自发进行.在此基础上采用含时密度泛函方法(TD-DFT)计算了分子激发态的电子跃迁能,得到对应激发态的吸收波长,所得结果与文献值基本吻合.     

Torsional effects on excitation energies of thiophene derivatives induced by beta-substituents: comparison between time-dependent density functional theory and approximated coupled cluster approaches

The influence of methyl or phenyl substitution in beta-position of dioxygenated terthiophene and diphenylthiophene on the optical properties is investigated by first-principles calculations. We compare the approximated singles and doubles coupled cluster (CC2) approach with time-dependent density functional theory methods. CC2 reproduces experimental excitation energies with an accuracy of 0.1 eV. We find that the different substituents modify the inter-ring torsional angle which in turn strongly influences the excitation energies. The steric contribution to the excitation energies have been separated from the total substituent effects.     

Acid-catalyzed nucleophilic aromatic substitution: experimental and theoretical exploration of a multistep mechanism

The mechanism for the acid-mediated substitution of a phenolic hydroxyl group with a sulfur nucleophile has been investigated by a combination of experimental and theoretical methods. We conclude that the mechanism is distinctively different in nonpolar solvents (i.e., toluene) compared with polar solvents. The cationic mechanism, proposed for the reaction in polar solvents, is not feasible and the reaction instead proceeds through a multistep mechanism in which the acid (pTsOH) mediates the proton shuffling. From DFT calculations, we found a rate-determining transition state with protonation of the hydroxyl group to generate free water and a tight ion pair between a cationic protonated naphthalene species and a tosylate anion. Kinetic experiments support this mechanism and show that, at moderate concentrations, the reaction is first order with respect to 2-naphthol, n-propanethiol, and p-toluenesulfonic acid (pTsOH). Experimentally determined activation parameters are similar to the calculated values (Delta H exp not equal =105+/-9, Delta H calcd not equal =118 kJ mol(-1); Delta G exp not equal =112+/-18, Delta G calcd not equal =142 kJ mol(-1)).     

The saddle point of the nucleophilic substitution reaction Cl− + CH3Cl: results of large-scale coupled cluster calculations

On the basis of large-scale coupled cluster calculations including connectedz triple substitutions in a perturbative way, the geometrical parameters of the D _{3 h} saddle point of the Walden inversion reaction Cl⁻ + CH₃Cl′→ ClCH₃ + Cl′⁻ are predicted to be R _s (C—Cl) = 2.301 ? and r _s (C—H) = 1.069 ?. The barrier height with respect to the reactants is recommended to be 11.5 ± 1.0 kJ mol⁻¹. Connected triple substitutions lower the barrier height by almost a factor of 2, but have very little influence on the geometric structure of the saddle point. Received: 26 June 1998 / Accepted: 15 July 1998 / Published online: 28 September 1998     

Evidences for the key role of hydrogen bonds in nucleophilic aromatic substitution reactions

The effect of hydrogen bonds on the fate of nucleophilic aromatic substitutions (S(N)Ar) has been studied in silico using a density functional theory approach in the condensed phase. The importance of these hydrogen bonds can explain the "built-in solvation" model of Bunnett concerning intermolecular processes between halogenonitrobenzenes and amines. It is also demonstrated that it can explain experimental results for a multicomponent reaction (the Ugi-Smiles coupling), involving an intramolecular S(N)Ar (the Smiles rearrangement) as the key step of the process. Modeling reveals that when an intramolecular hydrogen bond is present, it lowers the activation barrier of this step and enables the multicomponent reaction to proceed.     

Fundamental vibrational frequencies and dominant resonances in methylamine isotopologues by ab initio and density functional theory methods

Ab initio and density functional theory (DFT) calculations were performed for obtaining fundamental vibrational frequencies of methylamine, CH3NH2, and its deuterated variants CH3ND2, CD3NH2, and CD3ND2. The calculations were carried out using the CCSD(T) coupled cluster approximation with cc-pVTZ and cc-pVQZ basis sets, and by the DFT method with the semiempirical hybrid functional B97-1 with polarization consistent pc-2 and pc-3 basis sets. Reasonable performance of the DFT harmonic and ab initio harmonic calculations was found, which improved considerably upon combination of the harmonic fundamental frequencies with anharmonic corrections from the smaller, pc-2, basis. The computed anharmonic fundamental frequencies of methylamine isotopologues agree very well with the experimental values and represent a useful tool for assignment and analysis of the dominant resonances.     

Catalysis of nucleophilic substitution reactions in supramolecular systems

The factors determining the catalytic effect of supramolecular systems on the nucleophilic substitution reactions are analyzed. The role of the structural and phase transitions of nanoaggregates in the catalytic mechanism are determined. The substrate specificity is shown for different structures of the supramolecular composition.     

Coupled‐cluster reaction barriers of : An application of the coupled‐cluster//Kohn–Sham density functional theory model chemistry

In this work, we report a theoretical investigation concerning the use of the popular coupled‐cluster//Kohn‐Sham density functional theory (CC//KS‐DFT) model chemistry, here applied to study the entrance channel of the reaction, namely by comparing CC//KS‐DFT calculations with KS‐DFT, MRPT2//CASSCF, and CC//CASSCF results from our previous investigations. This was done by performing single point energy calculations employing several coupled cluster methods and using KS‐DFT geometries optimized with six different functionals, while conducting a detailed analysis of the barrier heights and topological features of the curves and surfaces here obtained. The quality of this model chemistry is critically discussed in the context of the title reaction and also in a wider context. © 2013 Wiley Periodicals, Inc.     

Study on electronic density topology of various cluster models of Mg/Al hydrotalcite by density functional theory

The geometry and electronic topology properties of Mg/Al hydrotalcite cluster models were comparatively investigated by means of density functional theory at GGA/DND levels. The results suggested that cluster model containing seven octahedral cations was the smallest size to be employed to simulate other properties. The fact that the n+ charge of cluster models containing n aluminum atoms can reflect electronic properties of anionic clay layer sheet. The bond lengths of clusters can be modified by terminating with or without OH~-/H_2O groups in terms of principle of bond order conservation.     

Correlation methods for analyzing and predicting reactivities in nucleophilic substitution processes

Various approaches used for analyzing and predicting reactivity in nucleophilic substitution reactions at saturated carbon atoms were systematized and compared. The similarities between these approaches, their scopes, advantages, and disadvantages were established. The trends and outlooks in the further development of qualitative and quantitative models for describing dependences of the reactivities of substances on the physicochemical properties of substrates and nucleophiles were analyzed.Translated fromIzyestiya Akademii Nauk. Seriya Khimicheskaya, No. 5, pp. 804–826, May, 1995.     

Reactivation pathway of the hydrogenase H‐cluster: Density functional theory study

This work puts forth a reaction pathway for the reactivation of exogenous ligand inhibited H‐cluster, the active site of Fe‐only hydrogenases. The H‐cluster is a dimetal complex, Fe–Fe, with the metal centers bridged by di(thiomethyl)amine. Exogenous ligands, H₂O, and OH^?, are bound to the distal iron (Fe_d). Density functional theory (DFT) calculations on the native and ruthenium‐modified H‐cluster have been performed using the B3LYP functional with 6‐31+G** and 6‐311+G** basis sets. We have ascertained that there is a thermodynamically favorable pathway for the reactivation of the OH^? inhibited H‐cluster, which proceeds by an initial protonation of the Fe_d–OH^? complex. The proposed reaction pathway has all its intermediate reactions ensue exothermically. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Au_n团簇催化水煤气变换反应机理的密度泛函理论研究

利用密度泛函理论(DFT)研究了Au10、Au13和Au20三类团簇的稳定性和对水煤气变换(WGSR)反应的催化活性,考察了各物质在Aun团簇上的吸附行为和微观反应机理。结果表明,三类Aun团簇的稳定性顺序为Au10Au13Au20,而Aun团簇中电子离域性及吸附能力大小趋势为Au13Au10Au20。在三类Aun团簇上,水煤气变换反应的控速步骤均为H2O的解离,但其反应机理路径有所不同。Au10团簇上为羧基机理,COOH*中间体直接解离;Au13团簇上为氧化还原机理,两个OH*发生歧化反应;Au20团簇上为羧基机理,COOH*和OH*发生歧化反应。通过对三类团簇上的最佳反应路径进行比较发现,Au13团簇在低温下具有较好的催化活性。     

Interaction of copernicium with gold: Assessment of applicability of simple density functional theories

Interactions of Cn (element 112) atom with small Au clusters are studied using accurate ab initio scalar relativistic coupled cluster method for correlation treatment and two‐component relativistic density functional theory (RDFT) to take account of spin‐dependent relativistic effects. The results demonstrate the failure of RDFT with simple generalized‐gradient and hybrid functionals in describing Cn–Au bonds in complex systems. © 2013 Wiley Periodicals, Inc.     

Regional self-interaction correction of density functional theory

We propose a new simple scheme for self-interaction correction (SIC) of exchange functionals in the density functional theory. In the new scheme, exchange energies are corrected by substituting exchange self-interactions for exchange functionals in regions of self-interaction. To classify the regions of self-interaction, we take advantage of the property of the total kinetic energy density approaching the Weizs?cker density in the case of electrons in isolated orbitals. The scheme differs from conventional SIC methods in that it produces optimized molecular structures. Applying the scheme to the calculation of reaction energy barriers showed that it provides a clear improvement in cases where the barriers are underestimated by conventional "pure" functionals. In particular, we found that this scheme even reproduces a transition state that is not given by pure functionals.     

金属Ir4簇催化乙烯加氢反应势能面的理论研究

应用密度泛函理论(DFT)对金属Ir4簇催化乙烯加氢反应的反应机理进行了详尽的理论研究．在B3LYP／ECP[C,H:6-311G(d)和6-31G(d);Ir:LANL2DZ]理论水平下优化了反应通道上各驻点(反应物、中间体、过渡态和产物)的几何构型,并且用组态相互作用CCSD／ECP[C,H:6-311G(d,p);Ir:LANL2DZ]计算了各驻点的单点能,构建了该反应的基态势能面．为了验证过渡态的真实性,在B3LYP／ECP理论水平下做了内禀反应坐标(IRC)计算和频率分析．计算结果表明:金属Ir4簇催化乙烯加氢反应为双通道(a和b)反应,经过多个反应步骤完成;通道a:R→TSR-1→I1→TS1-2→I2→TS2-3→I3→TS3-P→P为较为可行的反应通道．     

Exploring odd-even effects of simple oligomer-like DRCNnT series: a study based on density functional theory/time-dependent density functional theory calculations

Odd-even effects of short-circuit current density and power conversion efficiency (PCE) are an interesting phenomenon in some organic solar cells. Although some explanations have been given, why they behave in such a way is still an open question. In the present work, we investigate a set of acceptor-donor-acceptor simple oligomer-like small molecules, named the DRCNnT (n = 5-9) series, to give an insight into this phenomenon because the solar cells based on them have high PCE (up to 10.08%) and show strong odd-even effects in experiments. By modeling the DRCNnT series and using density functional theory, we have studied the ground-state electronic structures of the DRCNnT (n = 5-9) series in condensed phase. The calculated results reproduce the experimental trends well. Furthermore, we find that the exciton-binding energies of the DRCNnT series may be one of the key parameters to explain this phenomenon because they also show odd-even effects. In addition, by studying the effects of alkyl branch and terminal group on odd-even effects of dipole moment, we find that eliminating one or two alkyl branches does not break the odd-even effects of dipole moments, but eliminating one or two terminal groups does. Finally, we conclude that removing one alkyl branch close to the terminal group of DRCN5T can decrease highest occupied molecular orbital (HOMO) energy (thus increasing open circuit voltage) and increase dipole moment (thus enhancing charge separation and short-circuit current). This could be a new and simple method to increase the PCE of DRCN5T-based solar cells.     

左旋葡聚糖热解机理的密度泛函理论研究

采用密度泛函理论B3LYP/6-31++G(d,p)方法,对纤维素热解的主要产物左旋葡聚糖的热解反应机理进行了理论计算分析,设计了四种可能的热解反应途径, 对各种反应的反应物、产物和过渡态的结构进行了能量梯度全优化。计算结果表明,左旋葡聚糖开环成链状中间体时,首先,左旋葡聚糖中的两个半缩醛键C(1)-O(7)和C(6)-O(8)断裂,经过渡态TS₁形成中间体IM₁,同时,C(6)-O(7)结合成键使C(5)-C(6)-O(7)形成环状结构,该反应的能垒较高,为296.53 kJ/mol,然后IM₁经过渡态TS₂转变为中间体IM₂,该反应的能垒为234.09 kJ/mol;对IM₂设计了四条可能的反应路径,反应路径2和3能垒较低,是IM₂最可能的热解反应途径;在反应路径1和4中都包含了脱羰基反应,其反应能垒较高,不易发生。