Theoretical influence of third molecule on reaction channels of weakly bound complex CO2… HF systems

In this investigation, reaction channels of weakly bound complexes CO₂…HF, CO₂…HF…NH₃, CO₂…HF…H₂O and CO₂…HF…CH₃OH systems were established at the B3LYP/6‐311++G(3df,2pd) level, using the Gaussian 98 program. The conformers of syn‐fluoroformic acid or syn‐fluoroformic acid plus a third molecule (NH₃, H₂O, or CH₃OH) were found to be more stable than the conformers of the related anti‐fluoroformic acid or anti‐fluoroformic acid plus a third molecule (NH₃, H₂O, or CH₃OH). However, the weakly bound complexes were found to be more stable than either the related syn‐ and anti‐type fluoroformic acid or the acid plus third molecule (NH₃, H₂O, or CH₃OH) conformers. They decomposed into CO₂ + HF, CO₂ + NH₄F, CO₂ + H₃OF or CO₂ + (CH₃)OH₂F combined molecular systems. The weakly bound complexes have four reaction channels, each of which includes weakly bound complexes and related systems. Moreover, each reaction channel includes two transition state structures. The transition state between the weakly bound complex and anti‐fluoroformic acid type structure (T₁₃) is significantly larger than that of internal rotation (T₂₃) between the syn‐ and anti‐FCO₂H (or FCO₂H…NH₃, FCO₂H…H₂O, or FCO₂H…CH₃OH) structures. However, adding the third molecule NH₃, H₂O, or CH₃OH can significantly reduce the activation energy of T₁₃. The catalytic strengths of the third molecules are predicted to follow the order H₂O < NH₃ < CH₃OH. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2006     

Geometry optimization in ab initio SCF calculations. VII. Proton affinities and ion structures calculated with floating orbital geometry optimization (FOGO)

The FOGO method is used to calculate absolute proton affinities of the molecules H₂, HF, NH₃, H₂O, CH₃OH, C₂H₅OH, H₂O₂, CH₂O, CO, and CH₂CO. Comparison with experimental values demonstrates that the geometrical and energetical data resulting from this type of ab initio calculation are of chemical accuracy. Predictive data for higher energy isomers, such as hydroxymethylene and ethynol are given as possible aid for the identification of these species.     

Correlated one‐electron wave functions

Using four basis sets, 6‐311G(d,p), 6‐31+G(d,p), 6‐311++G(2d,2p), and 6‐311++G(3df,3pd), the optimized structures with all real frequencies were obtained at the MP2 level for dimers CH₂O? HF, CH₂O? H₂O, CH₂O? NH₃, and CH₂O? CH₄. The structures of CH₂O? HF, CH₂O? H₂O, and CH₂O? NH₃ are cycle‐shaped, which result from the larger bend of σ‐type hydrogen bonds. The bend of σ‐type H‐bond O…H? Y (Y?F, O, N) is illustrated and interpreted by an attractive interaction of a chemically intuitive π‐type hydrogen bond. The π‐type hydrogen bond is the interaction between one of the acidic H atoms of CH₂O and lone pair(s) on the F atom in HF, the O atom in H₂O, or the N atom in NH₃. By contrast with above the three dimers, for CH₂O? CH₄, because there is not a π‐type hydrogen‐bond to bend its linear hydrogen bond, the structure of CH₂O? CH₄ is a noncyclic shaped. The interaction energy of hydrogen bonds and the π‐type H‐bond are calculated and discussed at the CCSD(T)/6‐311++G(3df,3pd) level. © 2005 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

Long‐range π‐type hydrogen bond in dimers CH2?HF,CH2O?H2O,and CH2O?NH3

Using four basis bets, (6‐311G(d,p), 6‐31+G(d,p), 6‐31++G(2d,2p), and 6‐311++G(3df,3pd), the optimized structures with all real frequencies were obtained at the MP2 level for the dimers CH₂O? HF, CH₂O? H₂O, CH₂O? NH₃, and CH₂O? CH₄. The structures of CH₂O? HF, CH₂O? H₂O, and CH₂O? NH₃ are cycle‐shaped, which result from the larger bend of σ‐type hydrogen bonds. The bend of σ‐type H‐bond O…H? Y (Y?F, O, N) is illustrated and interpreted by an attractive interaction of a chemically intuitive π‐type hydrogen bond. The π‐type hydrogen bond is the interaction between one of the H atoms of CH₂O and lone pair(s) on the F atom in HF, the O atom in H₂O, or the N atom in NH₃. In contrast with the above three dimers, for CH₂O? CH₄, because there is not a π‐type hydrogen bond to bend its linear hydrogen bond, the structure of CH₂O? CH₄ is noncyclic shaped. The interaction energy of hydrogen bonds and the π‐type H‐bond are calculated and discussed at the CCSD (T)/6‐311++G(3df,3pd) level. © 2005 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

On the use of localized orbitals and restricted alternant orbitals in chemical systems

An analysis of the transformation of localized orbitals into restricted alternant orbitals is proposed. This approach has the advantage of expressing the wave-function in an orbital product while some electron correlation is introduced permitting the study of dissociation reactions. All applications of the orbital technique may be made as easily as with RHF, but with the additional possibility of studying chemical radicals. Some illustrations of this fact are shown for the molecules HF, H₂O, NH₃, CH₄, C₂H₆ and for the dissociation reactions of CH₄ and C₂H₆ generating CH₃ radicals.     

Localized molecular orbital studies in momentum space. II. Correspondence between coordinate and momentum space properties of various electron pairs

The momentum space properties of the ten-electron systems Ne, HF, H₂O, NH₃ and CH₄ as well as those of CH₃CH₃, CH₃NH₂, CH₃OH and FCH₂OH were investigated using localized molecular orbitals (LMO) obtained from ab initio self-consistent-field (SCF) wavefunctions constructed from double zeta quality gaussain basis sets.Compton profiles of various LMO electron pairs (CC, CN, CO, CF; CH, NH, OH, FH bond pairs and C, N, O, F lone pairs) are tabulated. In order to understand the correspondence between the momentum and the coordinate space properties of those electron pairs, the concept of the size and the shape of an LMO electron pair charge distribution has been utilized. The use of the intermediate expectation values of pⁿ is introduced for the purpose of interpreting the momentum space properties.The dependence of molecular property partitioning on different localization schemes and on different basis sets is also studied by using the H₂O profile as an example.     

Scaling in pseudopotential theory

Simple Gaussian nonlocal pseudopotentials are determined for K shells. Extrapolation formulas are derived for the parameters as functions of the reduced atomic number. Small hydrids are used for the basis function analysis. Comparison is made with the set of molecules in the book by Snyder and Basch, and detailed results are presented for the molecules BH₃, CH₄, NH₃, H₂O, HF, N₂, CO, BF, CH₃F, C₂H₂, HCN, CHONH₂, and CHOOH. Results on energy levels, total energy, total valence energy and dipolmoment and in a few cases some geometry predictions are made.     

K-shell ionization energies in molecules by SCF GF calculations

Energies of CH₄, NH₃, H₂O and C₂H₄ K-ionized molecules are calculated by means of a Group Function method using minimal or near minimal basis sets of STO's. Further results from very large basis sets are reported for CH₄, NH₃, and H₂O. Results seemingly do not suffer the shortcomings of a previous SCF MO treatment.     

Calculations of nuclear electric shielding in molecules

The electric shielding tensor at nuclei in the molecules H₂O, NH₃, CH₄ and CO has been evaluated via coupled Hartree-Fock perturbation theory. The average trace of the shielding tensor is linearly dependent on atomic electronegativities in the isoelectronic series H₂O, NH₃, CH₄.     

Multipole expansion of diatomic overlap

The systematic extension of Ruedenberg's expansion formula proposed in Part I [1] is applied to a series of diatomic and polyatomic molecules (BH, NH, HF, Be₂, C₂, F₂, CO, BH₃, CH₄, NH₃, H₂O, HCN and H₂CO). In general, good agreement with the results of full SCF calculations with the same minimum STO basis set is achieved. Thus, the errors due to this integral approximation scheme called MEDO (Multipole Expansion of Diatomic Overlap) are almost negligible compared to those introduced by basis set truncation.     

Intramolecular H-transfer in CH2OO and cis-HO3

Intramolecular H-transfer reactions in cis-HO₃ and CH₂OO were studied at the MP2 and B3LYP levels of theory. Activation energies (E _a) and Gibbs free energies of activation (?G ^#) of the H-transfer reactions were calculated. The activation energies of the H-transfer in cis-HO₃ and CH₂OO were about 110 and 130 kJ/mol, respectively. Catalytic effects of some protic molecules including HCOOH, CH₃OH, NH₃, CH₃NH₂, HOCl, H₂O₂, and H₂O, on the activation energies and transition state structures were studied. The more stable transition state structures were obtained in the presence of the protic molecules. Our calculations showed that the protic molecules decrease the activation energies of the H-transfer reactions about 50 kJ/mol.     

Density localization of atomic and molecular orbitals

Density localized molecular Orbitals are computed for the molecules LiH, LiF, BF, BN, CO, C₂H₂, CH₄, NH₃, H₂O, and HF. The density localization method is based on the minimization of the sum of the interorbital density overlap integrals. The results of this method are compared to the results of the energy localization method of Edmiston and Ruedenberg and the localization procedures of Boys and of Magnasco and Perico. The agreement among the results obtained by these four methods is in general good. With a few exceptions the localized molecular orbitals agree with the classical chemical concepts.

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Zusammenfassung Dichtelokalisierte Molekülorbitale sind berechnet worden für die Moleküle LiH, LiF, BF, BN, CO, C₂H₂, CH₄, NH₃, H₂O und HF. Die Dichtelokalisierungsmethode beruht auf der Minimisierung der Summe der Dichteüberlappungsintegrale zwischen verschiedenen Orbitalen. Die Ergebnisse dieses Verfahrens werden verglichen mit den Resultaten der Energielokalisierungsmethode von Edmiston und Ruedenberg und den Verfahren von Boys und von Magnasco und Perico. Die übereinstimmung zwischen den verschiedenen Methoden ist im allgemeinen gut. Mit einigen Ausnahmen werden die klassischen chemischen Vorstellungen von Elektronenpaaren reproduziert.

     

Asymmetry and Non‐Adiabaticity in Fragmentation of Disulfide Bonds upon Electron Capture

Although it has been generally assumed that electron attachment to disulfide derivatives leads to a systematic and significant activation of the S? S bond, we show, by using [CH₃SSX] (X=CH₃, NH₂, OH, F) derivatives as model compounds, that this is the case only when the X substituents have low electronegativity. Through the use of MP2, QCI and CASPT2 molecular orbital (MO) methods, we elucidate, for the first time, the mechanisms that lead to unimolecular fragmentation of disulfide derivatives after electron attachment. Our theoretical scrutiny indicates that these mechanisms are more intricate than assumed in previous studies. The most stable products, from a thermodynamic viewpoint, correspond to the release of neutral molecules; CH₄, NH₃, H₂O, and HF. However, the barriers to reach these products depend strongly on the electronegativity of the X substituents. Only for very electronegative substituents, such as OH or F, the loss of H₂O or HF is the most favorable process, and likely the only one observed. This is possible because of two concomitant factors, 1) the extra electron for [CH₃SSX]^? (X=OH, F) occupies a σ*(S? X) MO, which favors the cleavage of the S? X bond, and 2) the activation barriers associated with the hydrogen transfer process to produce H₂O and HF are rather low. Only when the substituents are less electronegative (X=H, CH₃, NH₂) the extra electron is located in a σ*(S? S) orbital and the cleavage of the disulfide bridge becomes the most favorable process. The intimate mechanism associated with the S? S bond dissociation process also depends strongly on the nature of the substituent. For X=H or CH₃ the process is strictly adiabatic, while for X=NH₂ it proceeds through a conical intersection ( CI ) associated with the charge reorganization necessary to obtain, from a molecular anion with the extra electron delocalized in a σ*(S? S) antibonding orbital, two fragments with the proper charge localization.     

Calculation and properties of non-orthogonal,strictly local molecular orbitals

A general procedure to calculate non-orthogonal, strictly local molecular orbitals (NOLMOs) expanded using only a subset of the total basis set is presented. The energy of a single determinant wave function is minimised using a Newton-Raphson approach. Total energies and barriers to internal rotation for CH₄, NH₃, H₂O, CH₃CH₃, CH₃NH₂, CH₃OH, NH₂NH₂, NH₂OH and HOOH, and certain properties of the NOLMOs present in these molecules, are investigated using the 4-31G basis set.     

Limits on the localized interpretation of molecular orbital wavefunctions

A new measure of orbital localizability is proposed. The actual improvement in classical electrostatic interpretations of electronic energy contributions on localization of CH₄, NH₃, H₂O, HF and Ne LCAO wavefunctions is computed to be small. Substantial valence LMO spatial overlapping remains.     

Study of the structural and electronic properties of 1-(4, 5 and 6-selenenyl derivatives-3-formyl-phenyl) pyrrolidinofullerenes

A series of 1-(4, 5 and 6-selenenyl derivatives-3-formyl-phenyl) pyrrolidinofullerenes molecules C₆₀-C₂H₄N-[3-(CHO)C₆H₃SeX] were investigated theoretically by performing Density Functional Theory calculations at the B3LYP/3-21G^∗ level of the theory. The substituents include: X = CN, CH₂CH(NH₂)CO₂H and CH₂CH₂CH(NH₂)CO₂H. We have selected these substituents to be in ortho, meta and para positions with relation to formyl group in order to show the effect of such structural change on the electronic properties of the molecules. The theoretical IR spectra, physical, chemical and thermodynamics properties of the molecules studied are obtained and discussed.     

Correlation balance in basis sets for electronic structure calculations

The balanced addition of polarization functions to the 6–31G and 6–311G basis sets for correlated wave functions is evaluated using bond energy predictions at the MP 2 and full MP 4 levels as a measure of correlation-balanced basis sets. The homolytic dissociations of the XH bonds in H₂, CH₄, NH₃, H₂O, and HF and the XY bonds in C₂H₆, NH₂NH₂, HOOH, and CH₃OH are used as the basis for the evaluation. It is found that correlation balance is achieved for HH, XH, and XY bonds, particularly at the MP 2 level, only if at least as many polarization sets, and sometimes more, are added to the hydrogens as are added to the heavy atoms.     

The multiconfigurational spin tensor electron propagator method (MCSTEP): Comparison with extended Koopmans' theorem results

Summary We applied the multiconfigurational spin tensor electron propagator method (MCSTEP) for determining the lowest few (in energy) vertical ionization potentials (IPs) of HF, H₂O, NH₃, CH₄, N₂, CO, HNC, HCN, C₂H₂, H₂CO, and B₂H₆. We chose these molecules so that we could compare MCSTEP IPs with recently reported extended Koopmans' theorem (EKT) IPs on the same molecules. Using standard Dunning core-valence basis sets with relatively small complete active spaces, MCSTEP results are in very good to excellent agreement with experiment. These MCSTEP IPs are obtained using matrices no larger than 400 × 400. EKT matrices are even smaller; however, to obtain similar but generally slightly worse agreement with experiment, fairly large active spaces are required with EKT.     

New crystal forms of tris(2-aminoethanolato-O,N)cobalt(III): Structures and properties

Crystal forms of cobalt(III) tris(2-aminoethanolate) hydrates, i.e., red cubic crystals of the composition fac-[Co(NH₂CH₂CH₂O)₃] · 5.44H₂O (fac-I · 5.44H₂O) and blue prismatic crystals of the composition mer-[Co(NH₂CH₂CH₂O)₃] · 3H₂O (mer-I · 3H₂O) were studied by the ⁵⁹Co, ¹³C NMR and X-ray diffraction methods. It was found that mer-[Co(NH₂CH₂CH₂O)₃] · 3H₂O (mer-I · 3H₂O) is a new pseudopolymorphic modification of fac-[Co(NH₂CH₂CH₂O)₃] · 3H₂O (fac-I · 3H₂O), while fac-I · 3H₂O represents a new polymorphic modification of the complex mer-[Co(NH₂CH₂CH₂O)₃] · 3H₂O (mer-I · 3H₂O) described previously. The comparative analysis of the spectra revealed dynamic equilibrium between these geometric isomers; the fac-isomer is stable in aqueous solutions.     

Scattering of high-energy electrons and x-rays from molecules: The 10-electon series Ne,HF, H2O,NH3, and Ch4

The elastic, inelastic, and total intensities for x-ray and high-energy electron scattering from the 10-electron systems Ne, HF, H₂O, NH₃, and CH₄ have been calculated by using SCF-MO wave functions obtained with double-zeta quality bases of Gaussian contractd wave functions. The effect of molecular binding and various other trends and systematics in the intensities have been examined with the help of difference functions computed between the present scattering intensities and those for the indpendent atom model (IAM ).