Resolution enhancement in multidimensional solid-state NMR spectroscopy of proteins using spin-state selection

We show that the resolution of homonuclear multidimensional solid-state NMR correlation experiments can be significantly improved using transition selection and spin-state-selective polarization transfer techniques. The selection and transfer of single states allow the removal of the J-coupling contribution from the line width in both the direct and indirect spectral dimensions. This is demonstrated with a new spin-state-selective CO-Calpha correlation experiment, applied to a microcrystalline 85-residue protein. With this new sequence, all four components of the CO-Calpha cross-peaks are separated into different spectra, obtained by linear combination of four recorded data sets. Line narrowing of up to 44% was obtained on the protein sample for the spin-state-selective CO-Calpha spectrum compared to a standard spin-diffusion experiment. The new technique also allows an easy distinction between "direct" and "relayed" transfer cross-peaks.     

Polyureas from carbon dioxide and diamines by means of triphenyl phosphite and pyridine hydrochloride

The reaction of carbon dioxide with aniline using triphenyl phosphite in pyridine is greatly facilitated by the addition of hydrochlorides of tertiary amines such as pyridine and triethylamine, and has been successfully applied to the preparation of polyureas of high molecular weight from carbon dioxide and aromatic diamines. The presence of a catalytic amount of pyridine hydrochloride significantly increased the inherent viscosity of the resulting polymers, the highest value being obtained with about an equivalent of the chloride. Optimal temperatures and pressures varied with diamines used, and were 60–80°C and 40–50 atm of carbon dioxide. The polycondensation reaction was also affected by the solvent compositions of pyridine and N-methylpyrrolidone, its optimum being dependent on diamines used.     

Preparation of sulfonyl aromatic polyamides and copolyamides by means of di- or triphenyl phosphite

High molecular-weight aromatic polyamides were obtained by the direct polycondensation reaction of 4,4′-sulfonyldibenzoic acid (SDA) with various aromatic diamines, by means of di- (DPP) or triphenyl phosphite (TPP) in N-methyl-2-pyrrolidone (NMP)-pyridine solution containing metal salts such as LiCl and CaCl₂. The factors affecting the phosphorylation reaction were investigated, in particular for the reaction of SDA and 4,4′-oxydianiline (ODA). For the polymerization by means of TPP, the optimum conditions are: molar ratio of TPP to diacid, higher than 2.3; concentration of metal salts, 8 wt % LiCl or 6 wt % CaCl₂; reaction temperature, 100°C; and monomer concentration, 0.4 mol/L. For the polymerization by means of DPP, the optimum conditions are: molar ratio of DPP to diacid, higher than 3.8; concentration of metal salts of 8 wt % LiCl or 10 wt % CaCl₂; reaction temperature, 110°C; and monomer concentration, 0.4 mol/L. Copolyamides were also prepared from the reaction of ODA with the mixed diacids of SDA and other dicarboxylic acids such as terephthalic acid, isophthalic acid, and 2,6-naphthalene dicarboxylic acid by using TPP and DPP as the condensing agents.     

31P NMR study of the hydrolytic activity of ethriol phosphite and triphenyl phosphite in a two-phase system

The hydrolytic activity of ethriol phosphite and triphenyl phosphite in the p-xylene/water two-phase system was studied by the³¹P NMR method. It was shown that the rate of hydrolysis can be controlled by varying the pH of the aqueous phase. Hydrolysis of triphenyl phosphite is much slower than that of ethriol phosphite in the tested pH range. Coordination of ethriol phosphite with a rhodium carbonyl complex completely suppresses its hydrolysis.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 5, pp. 1026–1030, May, 1991.     

Powder crystallography by proton solid-state NMR spectroscopy

The investigation of 1H-1H spin-diffusion build-up curves using a rate matrix analysis approach shows that high-resolution magic angle spinning NMR of protons, applied to powdered organic compounds, provides a method to probe crystalline arrangements. The comparison between experimental 1H data and simulation is shown to depend strongly on the parameters of the crystal structure, for example on the unit cell parameters or the orientation of the molecule in the unit cell, and those parameters are experimentally determined for a model organic compound.     

Longer-range distances by spinning-angle-encoding solid-state NMR spectroscopy

A new spinning-angle-encoding spin-echo solid-state NMR approach is used to accurately determine the dipolar coupling corresponding to a C-C distance over 4 ? in a fully labelled dipeptide. The dipolar coupling dependent spin-echo modulation was recorded off magic angle, switching back to the magic angle for the acquisition of the free-induction decay, so as to obtain optimum sensitivity. The retention of both ideal resolution and long-range distance sensitivity was achieved by redesigning a 600 MHz HX MAS NMR probe to provide fast angle switching during the NMR experiment: for 1.8 mm rotors, angle changes of up to ～5° in ～10 ms were achieved at 12 kHz MAS. A new experimental design that combines a reference and a dipolar-modulated experiment and a master-curve approach to data interpretation is presented.     

Decomposition of triphenyl phosphite ozonide catalyzed by pyridine

Pyridine accelerates the decomposition of triphenyl phosphite ozonide in CH₂Cl₂. The addition of alcohol to the system (PhO)₃PO₃–C₅H₅N–CH₂Cl₂ increases the rate of this process. The kinetics of (PhO)₃PO₃ decomposition in pyridine, in ethanol-pyridine, 2-propanol-pyridine mixtures and in CH₂Cl₂ were investigated.     

Time-dependent column performance of cholesterol-based stationary phases for HPLC by LC characterization and solid-state NMR spectroscopy

Three different cholesterol-based stationary phases were investigated with respect to their time-dependent separation behavior. The examined stationary phases differ in the used spacer molecule and the synthesis route and were used under routine laboratory conditions over a period of two years. The chromatographic behavior of the three phases was determined by using a standard reference material in addition to a separation of a steroid mixture. The surface chemistry and the modification of these with the chemically bonded moiety were investigated with nuclear magnetic resonance (NMR) spectroscopy and elemental analysis. Through applying different techniques we determined changes in retention and selectivity; solid-state NMR spectra showed changes in the surface chemistry dependent on the synthesis route. Superior long-term stability was observed for the undecanoate-cholesterol (UDC-Chol) column in terms of hydrophobic retentiveness and selectivity.     

Observation of ligand binding to cytochrome P450 BM-3 by means of solid-state NMR spectroscopy

A broad understanding of the binding modes of ligands and inhibitors to cytochrome P450 is vital for the development of new drugs. We investigated ligand binding in a site-specific fashion on cytochrome P450 BM-3 from Bacillus megaterium, a 119 kDa paramagnetic enzyme, using solid-state magic angle spinning nuclear magnetic resonance methods. Selective labeling and longitudinal relaxation effects were utilized to identify the peaks in a site-specific fashion and to provide evidence for binding. Well-resolved one-dimensional and two-dimensional NMR spectra of cytochrome P450 BM-3 reveal shifts upon binding of its substrate, N-palmitoylglycine. These data are consistent with the crystallographic result that a biochemically important amino acid residue, Phe87, moves upon ligation. This experimental scheme provides a tool for probing ligand binding for complex systems.     

Characterization of protein-ligand interactions by high-resolution solid-state NMR spectroscopy

A novel approach for detection of ligand binding to a protein in solid samples is described. Hydrated precipitates of the anti-apoptotic protein Bcl-xL show well-resolved (13)C-(13)C 2D solid-state NMR spectra that allow site-specific assignment of resonances for many residues in uniformly (13)C-enriched samples. Binding of a small peptide or drug-like organic molecule leads to changes in the chemical shift of resonances from multiple residues in the protein that can be monitored to characterize binding. Differential chemical shifts can be used to distinguish between direct protein-ligand contacts and small conformational changes of the protein induced by ligand binding. The agreement with prior solution-state NMR results indicates that the binding pocket in solid and liquid samples is similar for this protein. Advantages of different labeling schemes involving selective (13)C enrichment of methyl groups of Ala, Val, Leu, and Ile (Cdelta1) for characterizing protein-ligand interactions are also discussed. It is demonstrated that high-resolution solid-state NMR spectroscopy on uniformly or extensively (13)C-enriched samples has the potential to screen proteins of moderate size ( approximately 20 kDa) for ligand binding as hydrated solids. The results presented here suggest the possibility of using solid-state NMR to study ligand binding in proteins not amenable to solution NMR.     

On-line detection of emulsion polymerization by solid-state NMR spectroscopy

 The on-line detection of emulsion polymerization processes by means of solid-state NMR spectroscopy is demonstrated for the first time using poly(butyl acrylate) as a model system. Relatively short time intervals are accessible via ¹H detection while the use of ¹³C NMR spectroscopy results in an increased spectral resolution. Details of sample preparation and experimental techniques are given, while remaining artifacts of the preliminary results will be addressed in further investigations. Received: 7 November 1997 Accepted: 5 January 1998     

Molecular dynamics of a ferroelectric smectogen in its smectic phases by means of 2H NMR spectroscopy

In this work the dynamic behaviour of the ferroelectric liquid crystal (-)-(S )-[4-(2-methylbutyloxycarbonyl)phenyl] 4-n-heptylbiphenylcarboxylate (MBHB) in its smectic A (SmA), unwound chiral smectic C (uSmC*) and chiral smectic C (SmC*) phases has been studied by means of ²H NMR spectroscopy. Zeeman (T _1Z) and quadrupolar (T _1Q) spin-lattice relaxation times have been analysed to extract dynamic parameters (diffusion coefficients and activation energies). The small step rotation diffusion model in the uniaxial approximation has been used to describe overall spinning and tumbling motions, and the strong collision model to describe the internal reorientations of the aromatic fragment. Relaxation data in the SmC* phase have been analysed by using a theoretical approach. The dynamic features obtained in the smectic phases of this mesogen are here presented and discussed in comparison with the results obtained in other ferroelectric liquid crystals, focusing on the fast regime of motions.     

Orientational correlations in the glacial state of triphenyl phosphite

Spallation neutron and high-energy X-ray diffraction experiments have been performed to investigate the local structure of the glacial and supercooled liquid states in triphenyl phosphite. The observed diffraction patterns have been interpreted using a Reverse Monte Carlo modeling technique. The results show that the glacial state forms unusually weak intermolecular hydrogen bonds between an oxygen atom connected to a phenyl ring and an adjacent phenyl ring aligned in an approximately antiparallel configuration. The structure is very different from the hexagonal crystal which is characterized by two weaker hydrogen bonds between linear arrays of molecules which are offset from each other and packed in a hexamer arrangement.     

17O and 29Si NMR parameters of MgSiO3 phases from high-resolution solid-state NMR spectroscopy and first-principles calculations

The 29Si and 17O NMR parameters of six polymorphs of MgSiO3 were determined through a combination of high-resolution solid-state NMR and first-principles gauge including projector augmented wave (GIPAW) formalism calculations using periodic boundary conditions. MgSiO3 is an important component of the Earth's mantle that undergoes structural changes as a function of pressure and temperature. For the lower pressure polymorphs (ortho-, clino-, and protoenstatite), all oxygen species in the 17O high-resolution triple-quantum magic angle spinning (MAS) NMR spectra were resolved and assigned. These assignments differ from those tentatively suggested in previous work on the basis of empirical experimental correlations. The higher pressure polymorphs of MgSiO3 (majorite, akimotoite, and perovskite) are stabilized at pressures corresponding to the Earth's transition zone and lower mantle, with perovskite being the major constituent at depths >660 km. We present the first 17O NMR data for these materials and confirm previous 29Si work in the literature. The use of high-resolution multiple-quantum MAS (MQMAS) and satellite-transition MAS (STMAS) experiments allows us to resolve distinct oxygen species, and full assignments are suggested. The six polymorphs exhibit a wide variety of structure types, providing an ideal opportunity to consider the variation of NMR parameters (both shielding and quadrupolar) with local structure, including changes in coordination number, local geometry (bond distances and angles), and bonding. For example, we find that, although there is a general correlation of increasing 17O chemical shift with increasing Si-O bond length, the shift observed also depends upon the exact coordination environment.     

Bolalipid membrane structure revealed by solid-state 2H NMR spectroscopy

Membranes made from three specifically deuterium-labeled ether-linked bolalipids, [1',1',20',20'-2H4]C20BAS-PC, [2',2',19',19'-2H4]C20BAS-PC, or [10',11'-2H2]C20BAS-PC, were analyzed by 2H NMR spectroscopy. Unlike more common monopolar, ester-linked phospholipids, C20BAS-PC exhibits a high degree of orientational order throughout the membrane and the sn-1 chain of the lipid initially penetrates the bilayer at an orientation different from that of the bilayer normal, resulting in inequivalent deuterium atoms at the C1 position. The approximate hydrophobic layer thickness and area per lipid are 18.4 A and 60.4 A2, respectively, at 25 degrees C, and their respective thermal expansion coefficients are within 20% of the monopolar phospholipid, DLPC.     

Structural investigation of aluminium doped ZnO nanoparticles by solid-state NMR spectroscopy

The electrical conductivity of aluminium doped zinc oxide (AZO, ZnO:Al) materials depends on doping induced defects and grain structure. This study aims at relating macroscopic electrical conductivity of AZO nanoparticles with their atomic structure, which is non-trivial because the derived materials are heavily disordered and heterogeneous in nature. For this purpose we synthesized AZO nanoparticles with different doping levels and narrow size distribution by a microwave assisted polyol method followed by drying and a reductive treatment with forming gas. From these particles electrically conductive, optically transparent films were obtained by spin-coating. Characterization involved energy-dispersive X-ray analysis, wet chemical analysis, X-ray diffraction, electron microscopy and dynamic light scattering, which provided a basis for a detailed structural solid-state NMR study. A multinuclear ((27)Al, (13)C, (1)H) spectroscopic investigation required a number of 1D MAS NMR and 2D MAS NMR techniques (T(1)-measurements, (27)Al-MQMAS, (27)Al-(1)H 2D-PRESTO-III heteronuclear correlation spectroscopy), which were corroborated by quantum chemical calculations with an embedded cluster method (EEIM) at the DFT level. From the combined data we conclude that only a small part of the provided Al is incorporated into the ZnO structure by substitution of Zn. The related (27)Al NMR signal undergoes a Knight shift when the material is subjected to a reductive treatment with forming gas. At higher (formal) doping levels Al forms insulating (Al, H and C containing) side-phases, which cover the surface of the ZnO:Al particles and increase the sheet resistivity of spin-coated material. Moreover, calculated (27)Al quadrupole coupling constants serve as a spectroscopic fingerprint by which previously suggested point-defects can be identified and in their great majority be ruled out.     

Probing structure in the polymorphic domain of the L-enantiomer of N-benzoyl-phenylalanine by means of 2D solid-state NMR spectroscopy and DFT calculations

A study of polymorphism using a range of solid-state NMR techniques is presented. We demonstrate the existence of at least six polymorphs in a sample of N-benzoyl-L-phenylalanine. We also present methodology for the characterization of the protonation state, hydrogen bonding, and molecular conformation for the polymorphs, together with results of such a characterization for one of the polymorphs present in our sample. DFT modeling is used to investigate the separate effects hydrogen bonding and molecular conformation have on the chemical shift tensor.     

High-molecular-weight poly(p-phenyleneterephthalamide) by the direct polycondensation reaction with triphenyl phosphite

Poly(p-phenyleneterephthalamide) of high molecular weight was obtained when the polycondensation of terephthalic acid and p-phenylenediamine was carried out in N-methylpyrrolidone (NMP) that contained dissolved CaCl₂ and LiCl in the presence of pyridine. The molecular weight of the polymer obtained varied with the amount of pyridine relative to the metal salts and with the molar ratios of CaCl₂ to LiCl, the maximum η_inh value of 4.5 being obtained under the conditions Py/(CaCl₂ + LiCl) ≈ 2.5 (mol/mol), CaCl₂/LiCl ≈ 1.2 (mol/mol), and LiCl + CaCl₂ ≈ 4 g. Among the solvents tested, NMP was significantly effective for the reaction. Polycondensations of several combinations of other dicarboxylic acids and diamines were carried out with limited success.     

Toward the characterization of peptidoglycan structure and protein-peptidoglycan interactions by solid-state NMR spectroscopy

Solid-state NMR spectroscopy is applied to intact peptidoglycan sacculi of the Gram-negative bacterium Escherichia coli. High-quality solid-state NMR spectra allow atom-resolved investigation of the peptidoglycan structure and dynamics as well as the study of protein-peptidoglycan interactions.