Semi-micro preparation and characterization of mesoporous silica microspheres from rice husk sodium silicate using a non-ionic surfactant as a template: application in normal phase HPLC columns

A simple and low-cost process has been developed for the production of mesoporous silica microspheres using a non-ionic surfactant as a template in an aqueous acidic sodium silicate solution prepared from rice husk. The influences of synthesis parameters such as the sodium silicate concentration, hydrochloric acid concentration, temperature and aging time on the morphology and on particle size range are described. The product’s physical and normal phase chromatographic properties are reported.     

Study of influence of additives of tyloxapol on the chromatographic characteristics of the model compounds: the comparative characterization of micellar mobile phases of tyloxapol and Triton X‐100

The chromatographic behavior of model compounds of biomedical significance (organic acids, amino acids, drugs) was investigated using mobile phases modified with tyloxapol. The influence of factors such as concentration of tyloxapol, content of organic modifier and pH of mobile phase on the retention factor of solutes was studied. The results were compared with the data obtained by elution with mobile phases containing Triton X‐100 additives, since units of Triton X‐100 are repeated in the structure of tyloxapol. Divergence in chromatographic behavior of model compounds was explained by the difference in physico‐chemical characteristics (microviscosity, polarity, critical micelle concentration, shape of micelles, etc.) of tyloxapol and Triton X‐100 micelles. Copyright © 2009 John Wiley & Sons, Ltd.     

Enhancement of the solubilization capacity of water in Triton X-100/cyclohexane/water system by compressed gases

The effect of compressed CO2 and ethylene on the properties of Triton X-100/cyclohexane/water systems was studied at different temperatures and pressures. Surprisingly, it was discovered that the compressed gases had the functions of co-surfactants. At suitable pressures, the water-to-surfactant molar ratio (W0) was enhanced significantly by the dissolution of the gas in the solution. The microenvironment in the reverse micelles was investigated by UV-visible spectroscopy by using methyl orange (MO) as a probe. The influence of n-hexane, Na2CO3, NaHCO3, H2C2O4, and CaCl2 at various concentrations on the solubilization of water in the absence of compressed gases was also investigated in order to obtain some information about the mechanism of the interesting phenomenon. This new route to stabilize reverse micelles may have potential applications to other similar systems. Moreover, the results of this work provide some useful information to get insight into the mechanism of co-surfactants, because a conventional co-surfactant usually contains both polar group and hydrocarbon chain, and it is very difficult to clarify the functions these two groups, while the gases used in this work are small nonpolar molecules, which solely have the function of the hydrocarbon chain in a co-surfactant.     

保存条件对大鼠海马组织总RNA质量的影响

从大鼠海马组织提取总RNA后,测定了不同时间和温度下保存及3次循环冻融后RNA的浓度和纯度,并分析了其完整性;探讨了保存时间、保存温度及反复冻融对大鼠海马组织总RNA质量的影响.结果表明,不同条件下保存及冻融3次后RNA浓度较首次检测值均有所降低,4℃下保存60d标本中的RNA浓度明显低于对照组(P<0.05),其他组未见显著性差异;各组RNA的OD 260/OD280在1.8～2.0之间.在-20℃和-70℃下分别保存30d和60d,以及24h冻融3次后的样品RNA的完整性较好;但4℃下保存的两组样品的RNA发生分解.RNA在4℃和-20℃下分别保存30d和60d后,相应的RE[(不同条件下保存后的样品浓度-初始浓度)/初始浓度]值均大于15%,而-70℃下保存30d、60d以及在24h内冻融3次后的RE值均小于15%.据此可知,大鼠海马组织总RNA样品可在-70℃下保存60d,反复冻融3次后总RNA质量基本不变.     

HPLC method development and validation of cytotoxic agent phenyl‐heptatriyne in Bidens pilosa with ultrasonic‐assisted cloud point extraction and preconcentration

Extraction and pre‐concentration of a bioactive marker compound, phenyl‐1,3,5‐heptatriyne from Bidens pilosa, prior to HPLC has been demonstrated using both organic and ecofriendly solvents. Non‐ionic surfactants, viz. Triton X‐100, Triton X‐114 and Genapol X‐80, were used for extraction. No back‐extraction or liquid chromatographic steps were required to remove the target phytochemical from the surfactant‐rich extractant phase. The optimized cloud point extraction procedure has been shown to be a potentially useful methodology for the preconcentration of the target analyte, with a preconcentration factor of 4–99. Moreover, the method is simple, sensitive, rapid and consumes lesser solvent than traditional methods. An isocratic chromatographic separation and quantitation was accomplished on a C₁₈ column with acetonitrile–acidified aqueous as mobile phase at a flow rate of 1.0 mL/min, UV detection at 254 nm and specificity with photo diode‐array detector (PDA) and MS. Under the optimum experimental conditions recovery was satisfactory (99.18–100.33%) without interference from the surfactant. The method seems to be reliable with intraday precision and interday precision below 2.0%. Good linearity was obtained in the working range from 7.5 to 30 µg/mL with correlation coefficient >0.99. The limits of detection and quantitation were 1.84 and 6.13 µg/mL, respectively. The method was validated following international guidelines and successfully applied for quantitative assays of cytotoxic compound phenyl‐1,3,5‐heptatriyne in Bidens pilosa. Copyright © 2010 John Wiley & Sons, Ltd.     

Solid Substrate Room Temperature Phosphorimetry for the Determination of Trace Mercury Based on the Reaction between Alkaline Phosphatase and Mercury Using Triton X-100 as a Sensitizer

A new solid substrate room temperature phosphorimetry (SSRTP) for the determination of trace mercury has been established, using Triton X‐100 as a sensitizer. The regression equation of working curve was ΔI_p=11.40m(Hg²⁺)+1.569 (ag·spot^?1, n=6, ΔI_p=I_p1?I_p2, I_p1 and I_p2 referred to the phosphorescence intensity of the blank reagent and the test solution, respectively), and correlation coefficient (r) was 0.9984. The RSD valus of the determination of 0.016 and 8.0 ag·spot^?1 Hg²⁺ were 4.1% and 1.7% (n=8), respectively, indicating that the method had good repeatability. The limit of detection (LOD) calculated by 3Sb/k was 7.0 zg·spot^?1 Hg²⁺ (corresponding concentration: 1.8×10^?17 g·mL^?1, Sb=0.025, n=11). This method has high sensitivity, selectivity and precision, which was applied to determination of trace mercury in water samples with the result being agreed very well with that of dithizone extraction spectrophotometry.     

Enhancement of the StreptoTag method for isolation of endogenously expressed proteins with complex RNA binding targets

StreptoTag is a novel affinity chromatography-based method for the isolation of high- and low-affinity RNA binding proteins. Originally it was shown possible to isolate recombinant protein from yeast or bacterial extracts using small, specific, well-characterised RNA binding targets. Here we show that using an enhanced aptamer it is not only possible to efficiently immobilise large, highly structured RNA binding targets onto the streptomycin columns but also that the StreptoTag method can be used for the isolation and purification of endogenously expressed regulatory proteins, with relatively low abundance, from eukaryotic extracts. As an example for this we uncover the identity of a karyophilic cellular protein which specifically binds to an area within the large, highly folded structure that characterises the mRNA from the unique 3' region (U3) of the mouse mammary tumour virus (MMTV) long terminal repeat (LTR). Hence, this method is now suitable for the quick and efficient isolation and identification of novel RNA binding proteins such as regulatory factors.     

Reversible 5′-end biotinylation and affinity purification of synthetic RNA

A reversible biotinylation phosphoramidite was synthesized and incorporated onto the 5′-end of an oligoribonucleotide on a solid phase synthesizer. After cleavage and deprotection, the crude synthetic oligomer mixture was incubated with NeutrAvidin^® coated microspheres, and the failure sequences removed by washing with a buffer followed by treating the microspheres with tetrabutylammonium fluoride to give a high quality unmodified full-length oligoribonucleotide.     

Influence of Nafion Coatings and Surfactant on the Stripping Voltammetry of Heavy Metals at Bismuth‐Film Modified Carbon Film Electrodes

Nafion polymer coated bismuth‐film‐modified carbon film electrodes have been investigated for reducing the influence of contaminants such as surfactants in the anodic stripping voltammetry of trace metal ions. The influence of the coating on electrode response has been tested with both ex situ and in situ bismuth film deposition, with and without the polymer coating. The electrode assemblies and interfacial characteristics in the presence of the non‐ionic surfactant Triton‐X‐100 have been probed with electrochemical impedance spectroscopy. The Nafion coating successfully decreases the adsorption of Triton on the bismuth film surface, and demonstrates that this strategy allows measurement of these trace metals in environmental samples containing surfactants.     

Enhanced Performance of Edge‐Plane Pyrolytic Graphite (EPPG) Electrodes over Glassy Carbon (GC) Electrodes in the Presence of Surfactants: Application to the Stripping Voltammetry of Copper

The voltammetric performance of glassy carbon (GC) and edge‐plane pyrolytic graphite (EPPG) electrodes was investigated for the oxidation of potassium ferrocyanide in aqueous solution both with and without the addition of surfactant (sodium dodecyl sulfate and Triton X‐100). The heterogeneous electron transfer kinetics were determined for all cases, and it was found that the GC electrode surface was far more sensitive to the presence of surfactant than the more hydrophilic EPPG surface. This result was then applied to the electroanalysis of copper via adsorptive stripping voltammetry in the presence of Triton X‐100 and it was observed that the EPPG electrode response was unaffected by up to 100 μM of surfactant, whilst the voltammetry on the GC electrode was significantly affected by only 10 μM.     

The crystal structure of the CeNA:RNA hybrid ce(GCGTAGCG):r(CGCUACGC)

Cyclohexenyl nucleic acids (CeNA) are characterised by the carbon–carbon double bond replacing the O4′‐oxygen atom of the natural D ‐2′‐deoxyribose sugar ring in DNA. CeNAs exhibit a high conformational flexibility, are stable against nuclease activity and their hybridisation is RNA selective. Additionally, CeNA has been shown to induce an enhanced biological activity when incorporated in siRNA. This makes CeNA a good candidate for siRNA and synthetic aptamer applications. The crystal structure of the synthetic CeNA:RNA hybrid ce(GCGTAGCG):r(CGCUACGC) has been solved with a resolution of 2.50 Å. The CeNA:RNA duplex adopts an anti‐parallel, right‐handed double helix with standard Watson–Crick base pairing. Analyses of the helical parameters revealed the octamer to form an A‐like double helix. The cyclohexenyl rings mainly adopt the ³H₂ conformation, which resembles the C3′‐endo conformation of RNA ribose ring. This C3′‐endo ring puckering was found in most of the RNA residues and is typical for A‐family helices. The crystal structure is stabilised by the presence of hexahydrated magnesium ions. The fact that the CeNA:RNA hybrid adopts an A‐type double helical conformation confirms the high potential of CeNAs for the construction of efficient siRNAs which can be used for therapeutical applications.     

High‐Resolution Crystal Structure of a Silver(I)–RNA Hybrid Duplex Containing Watson–Crick‐like CSilver(I)C Metallo‐Base Pairs

Metallo‐base pairs have been extensively studied for applications in nucleic acid‐based nanodevices and genetic code expansion. Metallo‐base pairs composed of natural nucleobases are attractive because nanodevices containing natural metallo‐base pairs can be easily prepared from commercially available sources. Previously, we have reported a crystal structure of a DNA duplex containing T? Hg^II? T base pairs. Herein, we have determined a high‐resolution crystal structure of the second natural metallo‐base pair between pyrimidine bases C? Ag^I? C formed in an RNA duplex. One Ag^I occupies the center between two cytosines and forms a C? Ag^I? C base pair through N3? Ag^I? N3 linear coordination. The C? Ag^I? C base pair formation does not disturb the standard A‐form conformation of RNA. Since the C? Ag^I? C base pair is structurally similar to the canonical Watson–Crick base pairs, it can be a useful building block for structure‐based design and fabrication of nucleic acid‐based nanodevices.     

Thin‐Film Properties of DNA and RNA Bases: A Combined Experimental and Theoretical Study

The structures of the DNA and RNA bases cytosine, uracil, and thymine in thin films with a nominal film thickness of about 20 nm are studied by using X‐ray photoemission spectroscopy (XPS) and Fourier‐transform infrared spectroscopy. The molecules are evaporated in situ from powder on a gold foil. The experimental results indicate that cytosine is composed of two energetically close tautomeric forms, whereas uracil and thymine exist in only one tautomeric form. Additionally, quantum chemical calculations are performed to complement the experimental results. The relative energies of the tautomeric forms of cytosine, uracil, and thymine are calculated using Hartree–Fock (HF), density functional theory (DFT), and post‐HF methods. Furthermore, the assignment of the XPS spectra is supported by using simple model considerations employing Koopmans ionization energies and Mulliken net atomic charges.     

Use of specific polysaccharide‐immobilized monodisperse poly(glycidyl methacrylate) core–silica shell microspheres for affinity purification of lectins

Immobilization of polysaccharides (yeast mannan and gum arabic) on the macroporous poly(glycidyl methacrylate) monodisperse microspheres coated with silica (SiO₂)‐containing amino groups on the surface was used to prepare affinity sorbents for lectin purification. The efficiency of isolating mannose specific Pisum sativum lectin was demonstrated on sorbent with immobilized yeast mannan and that of galactose specific Glycine hispida lectin on sorbent with immobilized gum arabic. The microspheres with immobilized polysaccharides can be used for selecting an affinity sorbent for purification of other mannose‐ and galactose‐specific lectins. In contrast to yeast mannan, the gum arabic immobilized on the microspheres possesses much narrower specificity and is suitable for purification of only those galactose specific lectins which interact well with l ‐rhamnose or l ‐arabinose. The synthesized macroporous particles are capable of immobilizing 50 mg of polysaccharide per 1 g of the matrix, which is 10 times higher than the capacity of epoxy‐activated Sepharose 6B. That makes it possible to obtain the same lectin quantity using a column of 10 times smaller volume. Another advantage of novel affinity sorbents comparing corresponding Sepharose gels is the possibility of sorbent drying after use. Copyright © 2014 John Wiley & Sons, Ltd.     

Chemical degradation of an uncrosslinked pure fluororubber in an alkaline environment

The chemical degradation of an uncrosslinked pure fluoroelastomer (FKM; Viton A) in an alkaline environment (10% NaOH and 80 °C) was investigated. Scanning electron microscopy images showed that on a microscopic level, significant degradation substantially increased the surface roughness after prolonged exposure (e.g., 12 weeks). The molecular mechanisms of the chemical degradation processes at the surface were evaluated with X‐ray photoelectron spectroscopy and attenuated total reflectance/Fourier transform infrared spectroscopy. The results revealed that the early degradation proceeded primarily via dehydrofluorination reactions, creating double bonds in the rubber backbone. This further accelerated the degradation after longer exposure times. Furthermore, the resulting double bonds underwent nucleophilic attack by an aqueous NaOH solution to form several oxygenated species. All these species ultimately recombined to form crosslinks, as evidenced by the increase in the gel fraction and surface hardness (Shore A). The pronounced effect of chemical degradation through a reduction in the thermal stability of the pure FKM rubber upon exposure was also evident from thermogravimetric analysis and differential thermogravimetry. © 2004 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 42: 6216–6229, 2004