Conformational study of a strained tolanophane by dynamic 1H NMR spectroscopy and computational methods

The existence of a short C–H ⋯ π (alkyl–alkyne) interaction in the structure of a strained and relatively rigid tolanophane is expected to hinder the rotation about the C–C sp³ single bond. Variable-temperature NMR experiments (performed in three solvents, CDCl₃, THF-d₈, and acetone-d₆) and ab initio density functional calculations were carried out to investigate its dynamic nature. An energy barrier of 48.6 kJ/mol is determined at coalescence (210 K) with acetone-d₆ which is in good agreement with calculation result (54 kJ/mol). Correspondence: Hossein Reza Darabi, Chemistry and Chemical Engineering Research Center of Iran, Pajoohesh Blvd., km 17, Karaj Hwy, 14968-13151 Tehran, Iran.     

Conformational study of 1,2-cycloundecadiene by dynamic NMR spectroscopy and computational methods

Solutions of 1,2-cycloundecadiene in propane were studied by low-temperature (13)C NMR spectroscopy. A total of 17 peaks were observed at -166.7 degrees C, corresponding to two conformations of similar populations, one of C(1) symmetry (11 peaks) and the other of C(2) symmetry. The line shapes show that the predominant pathway for exchange of the topomers (C(1) and C(1)') of the C(1) conformation does not include the C(2) conformation. From the (13)C spectra, free-energy barriers of 8.38 +/- 0.15, 9.45 +/- 0.15, and 9.35 +/- 0.15 kcal/mol were determined for the C(1) to C(1)', (C(1) + C(1)') to C(2), and C(2) to (C(1) + C(1)') conversions, respectively, at -72.2 degrees C. The NMR results for this compound are discussed in terms of the conformations predicted by molecular mechanics calculations obtained with Allinger's MM3 program. Ab initio calculations of free energies are also reported at the HF/ 6-311G level for 25 conformations.     

Conformational analysis of ochratoxin a by NMR spectroscopy and computational molecular modeling

Two-dimensional NMR spectroscopy has been used for a complete assignment of the proton and carbon-13 spectra of the metabolite from Aspergillus ochraceus, ochratoxin A. In addition, phase-sensitive nuclear Overhauser effect spectrometry experiments and computational molecular modeling (MM2 and MMFF force field programs) have been employed to examine the conformational properties of ochratoxin A in chloroform solutions. Particular attention has been given to intramolecular hydrogen-bonding formation involving the phenolic group on dihydroisocoumarin, which may be responsible for the toxic mechanism of ochratoxin A.     

Applications of1H and13C NMR spectroscopy in structural investigations of Vinca indole alkaloids

This review considers the laws connecting the parameters of the¹H and¹³C NMR spectra with the structure of the substances and the use of these laws for solving structural and stereochemical problems of theVinca indole alkaloids and other compounds of closely related structure. For each type of alkaloids, characteristic features of the PMR and¹³C NMR spectra are given that permit the structures of similar bases to be established and their stereochemical identification to be performed.Institute of the Chemistry of Plant Substances, Academy of Sciences of the Uzbek SSR, Tashkent. Translated from Khimiya Prirodnykh Soedinenii, No. 1, pp. 3–15, January–February, 1986.     

Conformational study of cis-1,4-di-tert-butylcyclohexane by dynamic NMR spectroscopy and computational methods. Observation of chair and twist-boat conformations

[reaction: see text] Low-temperature 13C NMR spectra of cis-1,4-di-tert-butylcyclohexane (1) showed signals for the twist-boat (1a) and chair (1b) conformations. 13C NMR signals were assigned to specific carbons based on the different populations, different symmetries (time-averaged C(2v) for 1a and time-averaged C(s) for 1b), and calculated chemical shifts (GIAO, HF/6-311+G*). In addition to slow ring inversion and interconversion of the chair and twist-boat conformations, slow rotation of the tert-butyl groups was found. Most of the expected 13C peaks were observed. Free-energy barriers of 6.83 and 6.35 kcal/mol were found for interconversion of 1a (major) and 1b (minor) at -148.1 degrees C. Conformational space was searched with Allinger's MM3 and MM4 programs, and free energies were obtained for several low-energy conformations 1a-c. Calculations were repeated with ab initio methods up to the HF/6-311+G* level. Molecular symmetries, relative free energies, relative enthalpies and entropies, frequencies, and NMR chemical shifts were obtained. A boat conformation (1d; C(2v) symmetry) was generated and optimized as a transition state by ab initio, MM3, and MM4 calculations.     

Tetracyclic alkaloids of the sparteine group.1H and13C NMR spectroscopy and conformational analysis

The¹H and¹³C chemical shifts of 11 sparteine derivatives are reported. Substituent and group effects are interpreted in terms of structural properties. The conformational equilibrium of aphyllin is determined.Ruhr-Universität Bochum, Fakultät für Chemie, Bochum, Germany. Universität Hannover, Institut für Organische Chemie, Hannover, Germany (present address). Department of Organic Chemistry, Poznan Academy of Economics, Poznan, Poland. Published in Khimiya Geterotsiklicheskikh Soedinenii, No. 8, pp. 1026–1033, August, 1995. Original article submitted May 10, 1995.Dedicated to Prof. N. S. Zefirov on the occasion of his 60th birthday.     

Conformational studies of novel estrogen receptor ligands by 1D and 2D NMR spectroscopy and computational methods

The solution conformations of the novel estrogen receptor ligands (17α,20E)‐(p‐trifluoromethylphenyl)vinylestradiol ( 1 ) and (17α,20E)‐(o‐trifluoromethylphenyl)vinylestradiol ( 2 ) were investigated in 2D and 1D NOESY studies and by comparison of ¹³C NMR chemical shifts with theoretical shieldings. The ¹H and ¹³C assignments of 1 and 2 were determined by DEPT, COSY and HMQC experiments. The conformations of the 17α‐phenylvinyl substituents of 1 and 2 are of interest because of their differing receptor binding affinities and effects in in vivo uterotrophic growth assays. A statistical method of evaluating contributing conformers of 1 and 2 from predicted ¹³C shifts of possible structures correlated fairly well with conformational conclusions derived from the NOE data. The 17α substituents of 1 and 2 apparently exist in similar conformational equilibria, suggesting that while 1 and 2 would occupy a similar receptor volume, interactions with the protein may shift the equilibrium and thereby influence the expression of the ligand. Copyright © 2003 John Wiley & Sons, Ltd.     

Conformational studies on indole alkaloids from Flustra foliacea by NMR and molecular modeling

¹H and ¹³C NMR assignments for 1a–4a and 1b–4b were obtained using HSQC, HMBC and NOESY techniques. Differences and ambiguities from literature assignments are reconciled. For the pyrrolidine C‐ring, the combined use of NMR spectroscopy and molecular mechanics calculations revealed that this ring exists in a dynamic conformational equilibrium between twist (²T₁) and envelope‐twist (¹E–¹T₂) conformations. In chloroform‐d₁, the ¹H NMR coupling constants indicate that the pyrrolidine ring is biased in favor of the envelope‐twist conformation. Steric requirements of the N‐prenyl group enhanced the envelope‐twist (¹E–¹T₂) conformation populations. Copyright © 2002 John Wiley & Sons, Ltd.     

Conformational analysis of the tropane analogue of pethidine and related compounds by 1H NMR spectroscopy

The preferred solute conformation of ethyl 3α-phenyltropane-3β-carboxylate hydrochloride, the tropane analogue of pethidine, is shown to be a piperidine chair with an axial 3-phenyl substituent by analysis of its ¹H NMR characteristics and spectral comparisons with model compounds. Conformational studies of synthetic intermediates are also reported and favoured boat forms identified for 3α-diphenylhydroxymethyl-3β-tropanol and 3α-phenyl-3β-tropanyl phenyl ketone. In the hot-plate test for analgesia performed on mice, ethyl 3α-phenyltropane-3β-carboxylate is about 1·5 times as effective as pethidine.     

Conformational analysis of XA and AX dipeptides in water by electronic circular dichroism and 1H NMR spectroscopy

We measured the temperature-dependent electronic circular dichroism (ECD) spectra of AX, XA, and XG dipeptides in D2O. The spectra of all XA and AX peptides indicate a substantial population of the polyproline II (PPII) conformation, while the ECD spectra of LG, KG, PG, and AG were found to be quantitatively different from the alanine-based dipeptides. Additional UV absorption data indicate that the ECD spectra of the XG peptides stem from electronic coupling between the peptide and the C-terminal group, and that spectral differences reflect different orientations of the latter. We also measured the 1H NMR spectra of the investigated dipeptides to determine the 3JHalphaNH coupling constants for the C-terminal residue. The observed temperature dependence of the ECD spectra and the respective room-temperature 3JHalphaNH coupling constants were analyzed by a two-state model encompassing PPII and a beta-like conformation. The PPII propensity of alanine in the XA series is only slightly modulated by the N-terminal side chain, and is larger than 50%. As compared to AA, XA peptides containing L, P, S, K V, E, T, and I all cause a relative stabilization of the extended beta-strand conformation. The PPII fractions of XA peptides varied between 0.64 for AA and 0.58 for DA, whereas the PPII fractions of AX peptides were much lower. From the investigated AX peptides, only AL and AQ showed the expected PPII propensity. We found that AT, AI, and AV clearly prefer an extended beta-strand conformation. A quantitative comparison of AA, AAA, and AAAA revealed a hierarchy AAAA > AAA approximately AA for the PPII population, in agreement with predictions from MD calculations and results from Raman optical activity studies (McColl et al. J. Am. Chem. Soc. 2004, 126, 5076).     

Conformational equilibrium isotope effects in glucose by (13)C NMR spectroscopy and computational studies.

Anomeric equilibrium isotope effects for dissolved sugars are required preludes to understanding isotope effects for these molecules bound to enzymes. This paper presents a full molecule study of the alpha- and beta-anomeric forms of D-glucopyranose in water using deuterium conformational equilibrium isotope effects (CEIE). Using 1D (13)C NMR, we have found deuterium isotope effects of 1.043 +/- 0.004, 1.027 +/- 0.005, 1.027 +/- 0.004, 1.001 +/- 0.003, 1.036 +/- 0.004, and 0.998 +/- 0.004 on the equilibrium constant, (H/D)K(beta/alpha), in [1-(2)H]-, [2-(2)H]-, [3-(2)H]-, [4-(2)H]-, [5-(2)H]-, and [6,6'-(2)H(2)]-labeled sugars, respectively. A computational study of the anomeric equilibrium in glucose using semiempirical and ab initio methods yields values that correlate well with experiment. Natural bond orbital (NBO) analysis of glucose and dihedral rotational equilibrium isotope effects in 2-propanol strongly imply a hyperconjugative mechanism for the isotope effects at H1 and H2. We conclude that the isotope effect at H1 is due to n(p) --> sigma* hyperconjugative transfer from O5 to the axial C1--H1 bond in beta-glucose, while this transfer makes no contribution to the isotope effect at H5. The isotope effect at H2 is due to rotational restriction of OH2 at 160 degrees in the alpha form and 60 degrees in the beta-sugar, with concomitant differences in n --> sigma* hyperconjugative transfer from O2 to CH2. The isotope effects on H3 and H5 result primarily from syn-diaxial steric repulsion between these and the axial anomeric hydroxyl oxygen in alpha-glucose. Therefore, intramolecular effects play an important role in isotopic perturbation of the anomeric equilibrium. The possible role of intermolecular effects is discussed in the context of recent molecular dynamics studies on aqueous glucose.     

NMR spectroscopy of poly(vinyl chloride) defects. 2. 1H and 13C NMR analysis of the terminal vinyl end group, 1,3-dichlorobutyl end group and chloromethyl branch

We have been able to obtain the ¹H NMR subspectra of most of the major saturated end groups in PVC. In order to assign the terminal vinyl (TV) group, CH₂CH-CHCl-, we synthesized and analyzed the symmetrical model compound 3,5-dichloro-1,6-heptadiene (4) containing a racemic (r) and a meso (m) isomer. They exhibit distinct NMR signals for the vinyl protons, which allowed us to subsequently assign the r diad and the previously unreported m diad terminal vinyl resonances present in very small amounts in commercial PVC. The study of the solvent induced chemical shifts of the vinyl protons in an experimental PVC sample containing an unusually high level of this end group allowed us to further assign it in terms of the terminal rr, rm, mm and mr triads.     

Conformational analysis and stereoelectronic effects in trans-1,2-dihalocyclohexanes: 1H NMR and theoretical investigation

The conformational equilibrium of trans-1,2-difluoro- (1), trans-1,2-dichloro- (2) and trans-1,2-dibromo-cyclohexane (3) was studied through a combined method of NMR, theoretical calculations and solvation theory. The solvent dependence of the 3JH1,H2 NMR coupling constants together with theoretical calculations allow the direct determination of the conformational equilibria without recourse to model compounds. The coupling constants were obtained with the aid of spectrum simulation, since these symmetric molecules present complex coupling systems. The observed couplings, when analysed by solvation theory and utilising DFT geometries (B3LYP/6-311+G**), gave energy values of E(ee) -E(aa) of 0.10, 0.95 and 1.40 kcalmol(-1) in the vapour phase for 1, 2 and 3, respectively, decreasing to -0.63, 0.36 and 0.93 kcalmol(-1) in CCl4 and to -1.91, -0.80 and -0.05 kcalmol(-1) in DMSO solution. The diaxial preference for all compounds is explained by natural bond orbital (NBO) analysis, which shows important hyperconjugative effects in this conformation. The "gauche effect" for compounds with more electronegative substituents, which are in gauche arrangement in the ee conformation, also plays a relevant role in more polar solvents.     

Structural analysis of 1-vinylbenzazoles by 1H and 13C NMR spectroscopy

Analysis of ¹H and ¹³C NMR spectral parameters for 1-vinylbenzazoles has shown that the vinyl group has a predominantly trans orientation with respect to the condensed benzene ring. Additional evidence is given for a long range effect of the nitrogen lone pair electrons on the one bond ¹³C-¹H and ¹H-¹H spin-spin couplings and on the ¹H chemical shifts.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 4, pp. 499–501, April, 1988.     

Conformational analysis of oxazolidines by molecular and quantum mechanics and NMR spectroscopy

A combined experimental (¹HNMR) and theoretical (molecular mechanics and PCILO) study of (4S,5S,6R)-4-carbome-thoxyethylenyl-N-carbobenzyloxy-5-methyl-6-phenyl oxazolidine has been carried out with the purpose of contributing to a better understanding of the steric and electronic factors responsible for the observed diastereoisomeric selectivity in the dihydroxylation of oxazolidines leading to optically active α, β dialkoxyaldehydes.     

Conformational study of anticholinesterase carbamates in the furylbenzene series by 1H and 13C NMR spectroscopy

The structural analysis of carbamates derived from 2-(α-furyl)benzaldoximes and 2-(α-furyl)benzyl alcohols was carried out by ¹H and ¹³C NMR spectroscopy. The conjugative and steric effects of alkyl substituents introduced on the benzene rings were found to modify the relative orientation of the aromatic and furan rings. The existence of a close relationship between the stereochemistry of the studied compounds and their anticholinesterase activity has been proposed.     

1H NMR spectra. Part 30: 1H chemical shifts in amides and the magnetic anisotropy,electric field and steric effects of the amide group

The ¹H spectra of 37 amides in CDCl₃ solvent were analysed and the chemical shifts obtained. The molecular geometries and conformational analysis of these amides were considered in detail. The NMR spectral assignments are of interest, e.g. the assignments of the formamide NH₂ protons reverse in going from CDCl₃ to more polar solvents. The substituent chemical shifts of the amide group in both aliphatic and aromatic amides were analysed using an approach based on neural network data for near (≤3 bonds removed) protons and the electric field, magnetic anisotropy, steric and for aromatic systems π effects of the amide group for more distant protons. The electric field is calculated from the partial atomic charges on the N.C═O atoms of the amide group. The magnetic anisotropy of the carbonyl group was reproduced with the asymmetric magnetic anisotropy acting at the midpoint of the carbonyl bond. The values of the anisotropies Δχ_parl and Δχ_perp were for the aliphatic amides 10.53 and ?23.67 (×10^?6 ų/molecule) and for the aromatic amides 2.12 and ?10.43 (×10^?6 ų/molecule). The nitrogen anisotropy was 7.62 (×10^?6 ų/molecule). These values are compared with previous literature values. The ¹H chemical shifts were calculated from the semi‐empirical approach and also by gauge‐independent atomic orbital calculations with the density functional theory method and B3LYP/6–31G⁺⁺ (d,p) basis set. The semi‐empirical approach gave good agreement with root mean square error of 0.081 ppm for the data set of 280 entries. The gauge‐independent atomic orbital approach was generally acceptable, but significant errors (ca. 1 ppm) were found for the NH and CHO protons and also for some other protons. Copyright © 2013 John Wiley & Sons, Ltd.     

Conformational analysis of (+)-germacrene A by variable-temperature NMR and NOE spectroscopy

(+)-Germacrene A, an important intermediate in sesquiterpene biosynthesis, was isolated in pure form from a genetically engineered yeast and was characterized by chromatographic properties (TLC, GC), MS, optical rotation, UV, IR, ¹H NMR, and ¹³C NMR data. Variable-temperature 500 MHz ¹H NMR spectra in CDCl₃ showed that this flexible cyclodecadiene ring exists as three NMR-distinguishable conformational isomers in a ratio of about 5:3:2 at or below ordinary probe temperature (25 °C). The conformer structures were assigned by ¹H NMR data comparisons, NOE experiments, and vicinal couplings as follows: 1a (52%, UU), 1b (29% UD), and 1c (19%, DU).     

Conformational analysis of methylsuccinic acid by 1H NMR spectroscopy and circular dichroism

The pH-dependence of the ¹H NMR and Circular Dichroism (CD) spectra of 2-methylsuccinic acid was investigated. Both spectra undergo dramatic changes between pH 4 and 6, where both carboxylic groups become ionized. From the coupling constants of the tertiary proton with the assigned¹ diastereotopic methylene protons, it is concluded that below pH 4 the syn-clinal (2) and above pH 6 the anti-periplanar (1) conformation of methylsuccinic acid prevail. The diesters of methylsuccinic acid also assume mainly the syn-clinal conformation (2). The pH-dependence of the CD spectra is discussed in terms of conformation and/or ionization effects.