Infrared studies of rotational isomerism in α-halogeno-acetamides

Infrared spectra of fluoroacetamide, chloroacetamide, and iodoacetamide have been recorded in the solid, liquid, and vapour phases in the region 4000–200 cm^?1. A complete vibrational frequency assignment of the fundamental and non-fundamental bands has been made for each of these molecules. The results show that each of these compounds exists as an equilibrium mixture of gauche and trans isomers. Enthalpy differences (ΔH) between these isomers were calculated for each of these compounds in the liquid and vapour phases. The trans form is the most stable of the rotational isomers in all three phases.     

Theoretical and infrared studies on the conformational isomerism of trans-2-bromo-alkoxycyclohexanes

The infrared spectra of trans-2-bromo-alkoxycyclohexanes (alcoxy = OMe, OEt, O(i)Pr and O(t)Bu) were obtained for the neat liquid, and the C-Br stretching mode was quantitatively analyzed to give insight about the conformational isomerism of these compounds. Frequency calculations supported the band assignments, and the relative band intensities suggest that the diaxial conformer is prevalent for the methoxy and tert-butoxy derivatives (51 and 56%, respectively), while the diequatorial form is preponderant for the ethoxy and isopropoxy derivatives (76 and 77%, respectively). Therefore, the size of the alkoxy group plays a determinant role in determining the conformational preferences of the title compounds.     

Tautomeric and conformational isomerism of natural hydroxyanthraquinones

Natural 1,5-di-, 1,4,5-tri-, and 1,4,5,8-tetrahydroxyanthraquinones and their anions and metal complexes were shown to be equilibrium mixtures of tautomers and conformers using quantum-chemical and correlation analysis of elecronic absorption spectra. Solvent effects, ionization, complexation, and the introduction and substitution of substituents were accompanied by shifts of tautomeric and conformational equilibria that determine the color of the compounds. __________ Translated from Khimiya Prirodnykh Soedinenii, No. 3, pp. 224–229, May–June, 2006.     

Rotational isomerism and conformational energies in 2-haloethanols

The Raman spectra of 2-fluoroethanol have been obtained as a function of temperature in the liquid and in the solid phases. The results of these experiments have provided substantial evidence for the existence of trans conformers in the liquid phase. The above study, coupled with analysis of the temperature dependence of the C-X stretching vibrations of the other haloethanols in the pure liquid, has permitted, for the first time, a determination of ΔH for all four members of the series. An interpretation is offered to explain the observed trends in the conformational energy differences.     

Ab initio studies on the vibrational spectra and conformational isomerism of 2,4-dimethyl-1,3-pentadiene

Ab initio was used to study the structure of various conformational isomers and their vibrational spectra of 2,4-dimethyl-1,3-pentadiene (2,4-PD) in detail. Two stable conformations, s-trans and s-cis, were found in which s-trans is more stable. The geometry of stable conformations and charge distributions were studied, and the effect of different basis sets on geometry optimization is discussed. The results of complete optimization indicate that molecular skeleton is nearly in a plane, its largest deviation is only 0.3 degrees. Therefore, it is reasonable and available to hypothesis that the molecule has Cs symmetry. The thermal dynamics conformations were calculated and compared with experimental values. DeltaH(o) between two conformations of 2,4-PD measured from experiment is 4.36 kJ/mol, deltaS(o) is 2.56 J/mol K., calculated results are slightly different from experimental ones. Vibrational frequencies of 2,4-PD conformers have been studied by ab initio molecular orbital calculations using different basis set. The calculated vibrational frequencies are analyzed and compared with the experimental spectra.     

13C NMR studies of conformational isomerism in thioureas: Signal assignments via chemical shift and population trends

The 22.63 MHz ¹³C NMR spectra of a series of alkylated thioureas are reported. Characteristic Z and E spectral regions were found for the ¹³C ? S resonances. The two regions were generally found to be non-overlapping for the series, with the region of the Z, Z resonances occurring more downfield than those of either the Z, E or E, Z conformers in the cases of 1,3-disubstitution. The Z, Z configuration became favored and the relative chemical shift difference (Rδ) increased linearly with increasing substituent size. At 217 K, hindered internal rotation caused a multiplicity of resonances which were normally single peaks in the broad band ¹H decoupled 62.86 MHz ¹³C spectrum of CH₃NHCSNH(CH₂)₂NHCSNHCH₃ (2MTE) at room temperature. The trends in chemical shifts and populations were employed to assign tentatively the resonances of five of the six possible configurational isomers contributing to the 2MTE spectra at 217 K. The isomer populations are given. The ¹³C NMR spectra reported here led to signal assignments of Z and E isomers which supported prior ¹H NMR results and contradicted more recent results of another ¹³C NMR study of N-methylthiourea. The major peak of the exchange doublet occurs at relatively high field strengths in both methanol-d₅.     

Synthesis and conformational studies on some Nitro- and aminophthalideisoquinoline derivatives

Summary Nitro- and Aminophthalideisoquinolines were synthesized with a new efficient method. The molecular conformation of these derivatives was studied by¹H NMR methods. On the basis of these studies tritoqualine was to be found theerythro racemate.

---

Synthese und Konformationsuntersuchungen von Nitro- und Aminophthalidisochinolin

Zusammenfassung Nitro- und Aminophthalidisochinoline wurden nach einem neuen effizienten Verfahren hergestellt. Konformationsuntersuchungen dieser Verbindungen wurden mit Hilfe von¹H-NMR-Methoden vorgenommen.

     

Rotational isomerism of some 1-substituted silatranes

Conclusions It was shown by the DM method that the conformation of the side chain is realized in the 1--halo-propylsilatranes, the gauche form is realized predominantly in the 1-thioethoxymethylsilatranes, while a trans orientation of the C-S bond with respect to the silatrane fragment is realized in the 1--thioethoxye-thylsilatranes.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 7. pp. 1671–1673, July, 1977.     

Concomitant polymorphism and conformational isomerism in 4‐acetylresorcinol

Two polymorphs of the title compound [systematic name: 1‐(2,4‐dihydroxyphenyl)ethanone], C₈H₈O₃, were investigated. The known structure [designated (I‐M); P2₁/c, Z = 4; previously investigated at room temperature by Robert, Moore, Eichhorn & Rillema (2007). Acta Cryst. E 63 , o4252] was redetermined at low temperature, and a new form [(I‐O); P2₁2₁2₁, Z = 12] was discovered in the same sample. In both forms, the molecules are planar (apart from the methyl H atoms) and they contain intramolecular O—H...O=C hydrogen bonds. In polymorph (I‐M), molecules are linked into chains by a single intermolecular O—H...O hydrogen bond, and the chains are linked into sheets by two C—H...O hydrogen bonds. Three O—H...O hydrogen bonds link the molecules of polymorph (I‐O) into chains and neighbouring chains are connected by one C—H...O interaction to form an offset layer structure. Two weak methyl C—H...O interactions link the layers.     

Impact of azaproline on amide cis-trans isomerism: conformational analyses and NMR studies of model peptides including TRH analogues

The beta-turn is a well-studied motif in both proteins and peptides. Four residues, making almost a complete 180 degree-turn in the direction of the peptide chain, define the beta-turn. Several types of the beta-turn are defined according to Phi and Psi torsional angles of the backbone for residues i + 1 and i + 2. One special type of beta-turn, the type VI-turn, usually contains a proline with a cis-amide bond at residue i + 2. In an aza-amino acid, the alpha-carbon of the amino acid is changed to nitrogen. Peptides containing azaproline (azPro) have been shown to prefer the type VI beta-turn both in crystals and in organic solvents by NMR studies. MC/MD simulations using the GB/SA solvation model for water explored the conformational preferences of azPro-containing peptides in aqueous systems. An increase in the conformational preference for the cis-amide conformer of azPro was clearly seen, but the increased stability was relatively minor with respect to the trans-conformer as compared to previous suggestions. To test the validity of the calculations in view of the experimental data from crystal structures and NMR in organic solvents, [azPro(3)]-TRH and [Phe(2), azPro(3)]-TRH were synthesized, and their conformational preferences were determined by NMR in polar solvents as well as the impact of the azPro substitution on their biological activities.     

Structure and conformational isomerism of the major dimer of 2,3-naphthoquinodimethane

The major product from 2,3-naphthoquinodimethane formed by cyclisation of $\text{o}$-dipropadienylbenzene was found to be the dimer 5 containing an eight-membered ring, for which the inversion barrier was determined by dynamic ¹H NMR spectrometry, ΔG3 = 18 kcal/mole.     

Tautomerism and conformational isomerism of mercaptoacetylhydrazones of aliphatic and aromatic aldehydes

Mercaptoacetylhydrazones of aliphatic and aromatic aldehydes exist in the solutions as tautomeric mixtures of open-chain and cyclic 1,3,4-thiadiazine forms. The linear hydrazone form consists of a set of isomers due to the configurational and conformational isomerism. At growing bulk of the alkyl substituent at the C=N bond of the aliphatic aldehydes derivatives decreases the fraction of the cyclic tautomer; therewith the logarithms of the constants of the chain-ring tautomeric equilibrium correlate with the steric constants of the alkyl substituents. In the series of the aromatic aldehydes mercaptoacetylhydrazones the linear tautomer prevails, and the equilibrium position is insignificantlyt affected at variation of the electronic characteristics of the substituents in the aromatic ring.     

Infrared spectra and rotational isomerism of certain crystalline vinyl ethers

Conclusions In contrast to conformationally inhomogeneous liquid vinyl ethers, crystalline trialkylvinyloxyalkylammonium salts, according to the data of IR spectroscopy, exist practically only in the form of a flat (conjugated) conformation. An exception is trimethylvinyloxyethylammonium bromide, which crystallizes almost exclusively in a nonplanar form.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 7, pp. 1457–1460, July, 1971.     

Matrix isolation vibrational spectroscopy as a tool for studying conformational isomerism

The use of matrix isolation vibrational spectroscopy to study conformational isomerism is described. Methods of distinguishing conformational splitting from matrix splitting are discussed. Examples are given of molecules for which the conformational equilibrium existing in the gas phase prior to deposition is trapped out in the matrix, of molecules which exhibit reversible interconversion of conformers at matrix temperatures, and of a molecule for which the conformational distribution trapped out in the matrix is strongly dependent on matrix polarity. Results obtained for molecules which exhibit infrared-induced isomerisation in matrices are discussed.     

Infrared studies of group IIB metal complexes with some imidazole derivatives

The complexes formed by zinc(II), cadmium(II) and mercury(II) halides and perchlorates with N-ethylimidazole and N-propylimidazole have been prepared and characterized by molecular conductance and i.r. spectral data down to 100 cm⁻¹. On the basis of the assignments of the metal—halogen and the metal—ligand vibrations, the stereochemistry of the compounds was inferred.     

Infrared multiphoton and collision-induced dissociation studies of some gaseous alkylamine ions

Collision-induced dissociation and infrared multiphoton dissociation of ions formed in di- and tri-ethylamine, di- and tri-n-propylamine, and di-isopropylamine were investigated by Fourier-transform ion-cyclotron resonance mass spectrometry. Molecular ions of all amines except di-n-propylamine produced similar fragment ions when subjected to either dissociation technique. The initial fragmentation involved C_αC_β bond cleavage, loss of an alkyl radical, and formation of an immonium ions. Subsequent fragmentations of the immonium ions produced by both dissociation mechanisms involved McLafferty-type rearrangements and loss of alkenes. The molecular ion of di-n-propylamine fragmented by a different mechanism when subjected to infrared irradiation. Protonated molecules of di- and tri-n-propylamine yielded C₃H₆ and an ammonium ion upon infrared multiphoton dissociation, while protonated molecules of the other amines did not dissociate when this technique was applied. In contrast, collision-induced dissociation produced fragmentation for all protonated molecules. Explanation of the different fragmentations observed for the two dissociation techniques is given in terms of a mechanism involving a tight transition state for protonated di- and tri-n-propylamine dissociation.