The microscopic switching mechanism of a [2]catenane

We apply numerical simulations at an all-atom level to investigate the switching mechanism of a [2]catenane, a prototype of a molecular machine. This system is able to switch reversibly between two different stable states, upon external stimuli, with a time scale ranging from microseconds up to milliseconds, well over the typical domain of molecular dynamics (MD) computer simulations. However, combining a strategy recently developed for investigating rare events with ordinary MD, we are able to unravel the microscopic mechanism of the conformational rearrangements involved in the switching process, including dynamical effects. Along the path that connects the product and reactant state, we find several intermediate states characterized by pi-pi stacking interactions and hydrogen bonds. Moreover, counterions interact strongly with the system in a correlated way, in agreement with recent static calculations performed on [2]rotaxanes.     

Anion-templated assembly of a [2]catenane

The first example of a [2]catenane structure to be synthesized using anion templation is described. The nature of the anion template is demonstrated to be crucial to the assembly process, with only chloride anion producing the [2]catenane in acceptable yield. Anion binding studies reveal a dramatic catenation effect on anion selectivity properties as compared to a noncatenated acyclic receptor.     

Construction of a hetero pseudo[2]rota[2]catenane

A novel ammonium template containing three ammonium sites was synthesized. Two ammoniums located on the linear component served as template for cucurbit[6]uril to form the CB-based pseudo[2]rotacane while another one located on the macrocyclic component played a role of template for clipping reaction. As a result of a ‘‘threading-followed-by-clipping' approach, a novel hetero pseudo[2]rota[2]catenane was successfully constructed.     

Quantitative formation of a tetraporphyrin [2]catenane via copper and zinc coordination

A [2]catenane is formed quantitatively by mixing substituted 1,10-phenanthroline-based chelates with copper(I) acting as central template, the ring-forming reaction being based on the coordination of pyridinic bidentate ligands onto the zinc atoms of the four porphyrins surrounding the core of the molecule.     

A reverse donor-acceptor bistable [2]catenane

A [2]catenane, composed of a pi-electron-rich bis-1,5-dioxynaphthalene[38]crown10 (BDNP38C10) ring, mechanically interlocked with a large macrocycle containing two disubstituted tetraarylmethane "speed bumps" and two different pi-electron-deficient units--namely, naphthalene dimide (NpI) and bipyridinium (BIPY(2+)) units--has been synthesized from a [2]rotaxane, containing the former recognition unit, after performing two sequential Cu(I)-catalyzed azide-alkyne cycloadditions with a linker containing the latter recognition unit. The product, which exists as a single co-conformer, wherein the BDNP38C10 ring encircles the NpI unit, undergoes equilibration to give approximately equal amounts of the other co-conformer in which the BDNP38C10 ring encircles the BIPY(2+) unit.     

Discovery of an all-donor aromatic [2]catenane

We report herein the first all-donor aromatic [2]catenane formed through dynamic combinatorial chemistry, using single component libraries. The building block is a benzo[1,2-b:4,5-b′]dithiophene derivative, a π-donor molecule, with cysteine appendages that allow for disulfide exchange. The hydrophobic effect plays an essential role in the formation of the all-donor [2]catenane. The design of the building block allows the formation of a quasi-fused pentacyclic core, which enhances the stacking interactions between the cores. The [2]catenane has chiro-optical and fluorescent properties, being also the first known DCC-disulphide-based interlocked molecule to be fluorescent.

An all-donor [2]catenane has been synthesised via dynamic combinatorial chemistry. It features stacked benzodithiophenes which are quasi-pentacyclic through hydrogen bonding.     

Sulfate anion-templated assembly of a [2]catenane

The sulfate anion's templating role in catenane formation is demonstrated for the first time; a novel bis-pyridinium nicotinamide [2]catenane is prepared in a remarkable high yield and is shown to exhibit selectivity for sulfate, the templating anion.     

A Bistable Poly[2]catenane Forms Nanosuperstructures

Side‐chain poly[2]catenanes at the click of a switch! A bistable side‐chain poly[2]catenane has been synthesized and found to form hierarchical self‐assembled hollow superstructures of nanoscale dimensions in solution. Molecular electromechanical switching (see picture) of the material is demonstrated, and the ground‐state equilibrium thermodynamics and switching kinetics are examined as the initial steps towards processible molecular‐based electronic devices and nanoelectromechanical systems.

     

A circular tris[2]catenane from molecular 'figure-of-eight'

A 'figure-of-eight'-shaped molecule with Pd(ii) at the node was self-assembled into an unprecedented circular tris[2]catenane via reversible double catenation at both loops of the 'figure-of-eight' molecule.     

Synthesis by ring closing metathesis and properties of an electroactive calix[6]arene [2]catenane

Abstract

Tris-(N-phenylureido)-calix[6]arenes are heteroditopic non-symmetric molecular wheels that, in apolar media, bind viologen-based molecular axles in a pseudorotaxane-type fashion. Because of the precise kinetic requirements associated with the threading process, in apolar solvents, the dicationic portion of the axle enters the calixarene annulus exclusively from the upper rim. With the general aim to develop new prototypes of molecular devices and machines whose functions could be governed through a wider set of control elements, we envisaged that the unique properties of these calixarene wheels could be transferred to the synthesis of new catenanes for the construction of unidirectional rotary motors. Herein, we describe the synthesis of a tris(N-phenylureido)calix[6]arene-based catenane by applying the intramolecular ring-closing metathesis reaction for the catenation step on a pre-formed pseudorotaxane.     

Anion induced and inhibited circumrotation of a [2]catenane

The first example of a catenane capable of performing circumrotation via an anion switching methodology is described; of particular interest is a conformational locking mechanism which results from chloride coordination in the catenane binding cavity.     

An electrochemical color-switchable RGB dye: tristable [2]catenane

We propose a design for an electrochemically driven RGB dye based on a tristable [2]catenane, in which the color of the molecule can be switched between Red, Green, and Blue by merely changing voltage. Based on DFT calculations, we conclude that the tristable [2]catenane should consist of a CBPQT4+ ring interlocked with a polyether macrocyle containing DNP (red), TTF (green), and FBZD (blue) units as the tunable RGB color-generating donors. Thus, at controllable voltages 0, V1, and V2, the [2]catenane is expected to display green, blue, and red colors, respectively. The advent of these RGB tristable molecules may have potential applications in low cost paperlike electronic displays.     

Half-rotation in a kinetically locked [2]catenane induced by transition metal ion substitution

We report on a heterocircuit [2]catenane in which a reversible half-rotation of one ring about the other can be induced, and locked in place, by switching the coordination of the interlocked rings between Pd(II) and Co(III).     

Convenient synthesis of [3]catenane by olefin metathesis dimerizations

[3]Catenane 5a and 5b were synthesized conveniently by olefin metathesis dimerization of pseudorotaxanes 3a and 3b. The yields of 5a and 5b were influenced by concentrations of 3a and 3b, and a ring size of a center wheel of [3]catenane.     

Versatile formation of [2]catenane and [2]pseudorotaxane structures; threading and noncovalent stoppering by a self-assembled macrocycle

A self-assembled dimeric macrocycle between 4,4'-bis(4-pyridylmethoxy)biphenyl (L) and (en)Pd(NO(3))(2) was constructed, and its interactions with cyclodextrins of different cavity size resulted in the formation of [2]catenane and [2]pseudorotaxane systems, respectively. The structures were identified by 1D and 2D NMR spectroscopy and cold spray ionization mass (CSI-MS) spectrometry.     

Two classes of alongside charge-transfer interactions defined in one [2]catenane

A [2]catenane, which incorporates hydroquinone (HQ) and a sterically bulky tetrathiafulvalene (TTF) into a bismacrocycle, has been designed to probe the alongside charge-transfer (CT) interactions taking place between a TTF unit and one of the bipyridinium moieties in the tetracationic cyclophane cyclobis(paraquat-p-phenylene) (CBPQT4+). A template-directed strategy employs the HQ unit as the primary template for formation of the tetracationic cyclophane CBPQT4+, affording the desired [2]catenane structure but as an uncharacteristic green solid. The X-ray crystal structure and detailed 13C NMR assignments have identified a stereoselective preference for catenation about the cis isomer. The 1H NMR spectroscopy, electrochemistry, and X-ray crystallography all confirm that the CBPQT4+ cyclophane encircles the HQ unit, thereby defining a structure which would normally determine a red color. The visible-NIR region of the absorption spectrum displays a band at approximately 740 nm that is unambiguously assigned to a TTF --> CBPQT4+ CT transition on the basis of resonance Raman spectroscopy using 785 nm excitation. The profile of the CT band changes depending on the ratio of the cis- to trans-TTF isomers in the [2]catenane for which the molar absorptivity of each isomer is estimated to be significantly different at epsilon max = 380 and 3690 M-1 cm-1, respectively. Molecular modeling studies confirmed that the observed difference in the absorption spectroscopic profile can be accounted for by both a better overlap of the HOMO(TTF) and LUMO+1(CBPQT4+) as well as a more stable face-to-face (pi...pi) conformation in the trans isomer compared to the edge-to-face cis isomer of the [2]catenane. The latter is arranged for pi-orbital overlap through the sulfur atoms of the TTF unit, thereby defining an [Spi...pi] interaction.     

M3L2 metallo-cryptophanes: [2]catenane and simple cages

Crystalline M(3)L(2) complexes with either single cage or triply interlocking [2]catenane chiral structures are formed the self-assembly of host-like ligands with transition metals.