High-performance liquid chromatographic assay of 6-methylthioguanine, a major metabolite of 6-thioguanine, in urine

A flow-fluorimetric high-performance liquid chromatographic assay for 6-methylthioguanine in urine has been developed. This compound is a major catabolite of 6-thioguanine, an important drug in cancer chemotherapy. The metabolite was extracted from alkaline urine with ethyl acetate which was injected onto a reversed-phase high-performance liquid chromatographic system for separation and detection. The method is simple, rapid and sensitive to below 500 ng ml-1 which is below the levels encountered following a therapeutic dose of 6-thioguanine. Another metabolite was chromatographically separated from 6-methylthioguanine and partially characterised.     

Preferential inhibition of xanthine oxidase by 2-amino-6-hydroxy-8-mercaptopurine and 2-amino-6-purine thiol

Background  

The anticancer drug, 6-mercaptopurine (6MP) is subjected to metabolic clearance through xanthine oxidase (XOD) mediated hydroxylation, producing 6-thiouric acid (6TUA), which is excreted in urine. This reduces the effective amount of drug available for therapeutic efficacy. Co-administration of allopurinol, a suicide inhibitor of XOD, which blocks the hydroxylation of 6MP inadvertently enhances the 6MP blood level, counters this reduction. However, allopurinol also blocks the hydroxylation of hypoxanthine, xanthine (released from dead cancer cells) leading to their accumulation in the body causing biochemical complications such as xanthine nephropathy. This necessitates the use of a preferential XOD inhibitor that selectively inhibits 6MP transformation, but leaves xanthine metabolism unaffected.     

Chiroptical properties of an alternatingly functionalized cellotriose bearing two porphyrin groups

Right-handedness derived from bisporphyrins attached to a cellotriose backbone at O-6 and O'-6 positions is revealed for the first time. This cellotriose is proposed as a model of alternatingly functionalized cellulosics, which have promising properties for applications in optoelectronics and molecular receptors owing to the chirality and rigid backbone effects.     

Side-Chain Chemistry Governs Hierarchical Order of Charge-Complementary β-sheet Peptide Coassemblies

Self-assembly of proteinaceous biomolecules into functional materials with ordered structures that span length scales is common in nature yet remains a challenge with designer peptides under ambient conditions. This report demonstrates how charged side-chain chemistry affects the hierarchical co-assembly of a family of charge-complementary β-sheet-forming peptide pairs known as CATCH(X+/Y−) at physiologic pH and ionic strength in water. In a concentration-dependent manner, the CATCH(6K+) (Ac-KQKFKFKFKQK-Am) and CATCH(6D−) (Ac-DQDFDFDFDQD-Am) pair formed either β-sheet-rich microspheres or β-sheet-rich gels with a micron-scale plate-like morphology, which were not observed with other CATCH(X+/Y−) pairs. This hierarchical order was disrupted by replacing D with E, which increased fibril twisting. Replacing K with R, or mutating the N- and C-terminal amino acids in CATCH(6K+) and CATCH(6D−) to Qs, increased observed co-assembly kinetics, which also disrupted hierarchical order. Due to the ambient assembly conditions, active CATCH(6K+)-green fluorescent protein fusions could be incorporated into the β-sheet plates and microspheres formed by the CATCH(6K+/6D−) pair, demonstrating the potential to endow functionality.     

The glmS ribozyme tunes the catalytically critical pK(a) of its coenzyme glucosamine-6-phosphate

The glmS ribozyme riboswitch is the first known natural catalytic RNA that employs a small-molecule cofactor. Binding of glucosamine-6-phosphate (GlcN6P) uncovers the latent self-cleavage activity of the RNA, which adopts a catalytically competent conformation that is nonetheless inactive in the absence of GlcN6P. Structural and analogue studies suggest that the amine of GlcN6P functions as a general acid-base catalyst, while its phosphate is important for binding affinity. However, the solution pK(a) of the amine is 8.06 ± 0.05, which is not optimal for proton transfer. Here we used Raman crystallography directly to determine the pK(a)'s of GlcN6P bound to the glmS ribozyme. Binding to the RNA lowers the pK(a) of the amine of GlcN6P to 7.26 ± 0.09 and raises the pK(a) of its phosphate to 6.35 ± 0.09. Remarkably, the pK(a)'s of these two functional groups are unchanged from their values for free GlcN6P (8.06 ± 0.05 and 5.98 ± 0.05, respectively) when GlcN6P binds to the catalytically inactive but structurally unperturbed G40A mutant of the ribozyme, thus implicating the ribozyme active site guanine in pK(a) tuning. This is the first demonstration that a ribozyme can tune the pK(a) of a small-molecule ligand. Moreover, the anionic glmS ribozyme in effect stabilizes the neutral amine of GlcN6P by lowering its pK(a). This is unprecedented and illustrates the chemical sophistication of ribozyme active sites.     

Synthesis and relative stability of 3,5-diacyl-4,5-dihydro-1H-pyrazoles prepared by dipolar cycloaddition of enones and alpha-diazoketones

An unusual reaction process that produced unexpected heterocyclic systems by a fragmentation-recombination mechanism is described. Thus treatment of the triketone, 3-acetyl-2,6-heptanedione, 1, with methanesulfonyl azide gave, in addition to the expected alpha-diazo ketone 3a, the dihydropyrazole 3c and its oxidation product, the pyrazole 3d. We propose that the initially formed alpha-diazo ketone 3a fragments into the simple alpha-diazomethyl ketone and methyl vinyl ketone which then undergo an intermolecular [2,3]-dipolar cycloaddition. Analogous treatment of the trifluoromethyl trione 2 again afforded a pyrazole 4c. Further experiments were carried out to lend evidence to our mechanistic hypothesis. Thus alpha-diazoacetophenone 5 and MVK underwent a [2,3]-dipolar cycloaddition under mild conditions to give the two regioisomeric dihydropyrazoles 6a and 6b. Interestingly these were formed in a 2:1 ratio, which suggested that 6a was more stable than 6b. The structures of 6a and 6b were optimized by using the B3LYP density functional method and the 6-31G* basis set and isomer 6a was predicted to be 1.5 kcal/mol more stable than isomer 6b. This energy difference could be rationalized by the greater capacity of the acetyl group than the benzoyl group to conjugate with the hydrazone. This difference in conjugation is reflected by key bond length differences. Thus we have discovered a novel fragmentation-cycloaddition process. We have also presented evidence for the mechanism of the formation of the dihydropyrazoles and carried out calculations to support these findings.     

Isostructurality, polymorphism and mechanical properties of some hexahalogenated benzenes: the nature of halogen...halogen interactions

The nature of intermolecular interactions between halogen atoms, X...X (X = Cl, Br, I), continues to be of topical interest because these interactions may be used as design elements in crystal engineering. Hexahalogenated benzenes (C6Cl(6-n)Br(n), C6Cl(6-n)I(n), C6Br(6-n)I(n)) crystallise in two main packing modes, which take the monoclinic space group P2(1)/n and the triclinic space group P1. The former, which is isostructural to C6Cl6, is more common. For molecules that lack inversion symmetry, adoption of this monoclinic structure would necessarily lead to crystallographic disorder. In C6Cl6, the planar molecules form Cl...Cl contacts and also pi...pi stacking interactions. When crystals of C6Cl6 are compressed mechanically along their needle length, that is, [010], a bending deformation takes place, because of the stronger interactions in the stacking direction. Further compression propagates consecutively in a snakelike motion through the crystal, similar to what has been suggested for the motion of dislocations. The bending of C6Cl6 crystals is related to the weakness of the Cl...Cl interactions compared with the stronger pi...pi stacking interactions. The triclinic packing is less common and is restricted to molecules that have a symmetrical (1,3,5- and 2,4,6-) halogen substitution pattern. This packing type is characterised by specific, polarisation-induced X...X interactions that result in threefold-symmetrical X3 synthons, especially when X = I; this leads to a layered pseudohexagonal structure in which successive planar layers are inversion related and stacked so that bumps in one layer fit into the hollows of the next in a space-filling manner. The triclinic crystals shear on application of a mechanical stress only along the plane of deformation. This shearing arises from the sliding of layers against one another. Nonspecificity of the weak interlayer interactions here is demonstrated by the structure of twinned crystals of these compounds. One of the compounds studied (1,3,5-tribromo-2,4,6-triiodobenzene) is dimorphic, adopting both the monoclinic and triclinic structures, and the reasons for polymorphism are suggested. To summarise, both chemical and geometrical models need to be considered for X...X interactions in hexahalogenated benzenes. The X...X interactions in the monoclinic group are nonspecific, whereas in the triclinic group some X...X interactions are anisotropic, chemically specific and crystal-structure directing.     

The application of event-tree based approach in long-term crude oil scheduling

This paper addresses the problem of optimal operation in long-term crude oil scheduling, which involves unloading crude oil from vessels, transferring it to charging tanks and feeding it to the distillation units. The application of a new approach for modeling and optimization of long-term crude oil scheduling is presented and the event-tree based modeling method that is very different from mathematical programming is employed. This approach is developed on the basis of natural language modeling and continuous time representation. Event triggered rules, decomposition strategy, depth-first search algorithm and pruning strategy are adopted to improve the efficiency of searching the optimum solution. This approach is successfully applied to an industrial-size problem over a horizon of 4 weeks, involving 7 vessels, 6 storage tanks, 6 charging tanks, 2 crude oil distillation units, and 6 crude oil types. The CPU (AMD 3000+, 2.0GHz) solving time is less than 70 seconds.     

Density functional theory studies of the [2]rotaxane component of the Stoddart-heath molecular switch

The central component of the programmable molecular switch recently demonstrated by Stoddart and Heath is [2]rotaxane, which consists of a cyclobis(paraquat-p-phenylene) shuttle (CBPQT(4+))(PF(6)(-))(4) (the ring) encircling a finger and moving between two stations, tetrathiafulvalene (TTF) and 1,5-dioxynaphthalene (DNP). As a step toward understanding the mechanism of this switch, we report here its electronic structure using two flavors of density functional theory (DFT): B3LYP/6-31G and PBE/6-31G. We find that the electronic structure of composite [2]rotaxane can be constructed reasonably well from its parts by combining the states of separate stations (TTF and DNP) with or without the (CBPQT)(PF(6))(4) shuttle around them. That is, the "CBPQT@TTF" state, (TTF)(CBPQT)(PF(6))(4)-(DNP), is described well as a combination of the (TTF)(CBPQT)(PF(6))(4) complex and free DNP, and the "CBPQT@DNP" state, (TTF)-(DNP)(CBPQT)(PF(6))(4), is described well as a combination of free TTF and the (DNP)(CBPQT)(PF(6))(4) complex. This allows an aufbau or a "bottom-up" approach to predict the complicated [n]rotaxanes in terms of their components. This should be useful in designing new components to lead to improved properties of the switches. A critical function of the (CBPQT(4+))(PF(6)(-))(4) shuttle in switching is that it induces a downshift of the frontier orbital energy levels of the station it is on (TTF or DNP). This occurs because of the net positive electrostatic potential exerted by the CBPQT(4+) ring, which is located closer to the active station than the four PF(6)(-)'s. This downshift alters the relative position of energy levels between TTF and DNP, which in turn alters the electron tunneling rate between them, even when the shuttle is not involved directly in the actual tunneling process. Based on this switching mechanism, the "CBPQT@TTF" state is expected to be a better conductor since it has better aligned levels between the two stations. A second potential role of the (CBPQT(4+))(PF(6)(-))(4) shuttle in switching is to provide low-lying LUMO levels. If the shuttle is involved in the actual tunneling process, the reduced HOMO-LUMO gap (from 3.6 eV for the isolated finger to 1.1 eV for "CBPQT@TTF" or to 0.6 eV for "CBPQT@DNP" using B3LYP) would significantly facilitate the electron tunneling through the system. This might occur in a folded conformation where a direct contact between free station and the shuttle on the other station is possible. When this becomes the main switching mechanism, we expect the "CBPQT@DNP" state to become a better conductor because its HOMO-LUMO gap is smaller and because its HOMO and LUMO are localized at different stations (HOMO exclusively at TTF and LUMO at CBPQT encircling DNP) so that the HOMO-to-LUMO tunneling would be through the entire molecule of [2]rotaxane. Thus an essential element in designing these switches is to determine the configuration of the molecules (e.g., through self-assembled monolayers or incorporation of conformation stabilizing units).     

Total synthesis, molecular editing and evaluation of a tripyrrolic natural product: the case of "butylcycloheptylprodigiosin"

Conflicting reports are found in the literature on whether the ortho-pyrrolophane derivative 6, which has been named "butylcycloheptylprodigiosin" even though it is a cyclononane derivative, is a natural product or merely a mis-assigned structure. This dispute has now been resolved by an unambiguous total synthesis of this complex alkaloid which confirms the initial structure assignment. The chosen approach is largely catalysis-based, featuring the first application of a "Narasaka-Heck" reaction in natural product chemistry. This palladium-catalyzed transformation allows the unsaturated oxime ester 26 to be converted into the bicyclic dihydropyrrole 27. Other notable reactions of the reported approach to 6 are a regioselective Tsuji-Trost reaction of the doubly allylic acetate 21 with methyl acetoacetate, a base-induced aromatization of 27 to the corresponding pyrrole 28, a chemoselective oxidation of the benzylic methyl group in 33 with cerium ammonium nitrate in a biphasic reaction medium that does not affect the labile pyrrole nucleus, and a Suzuki cross-coupling for the completion of the heterocyclic domain. Diversification in the latter step leads to a set of analogues that differ from the natural product in the terminal (hetero)arene ring. This structural modification results in complete loss of the very pronounced ability of the parent compound 6 to induce oxidative cleavage in double stranded DNA in the presence of Cu(II). Several cyclononane-, cyclononene- and cyclononadiene derivatives prepared en route to 6 have been characterized by crystal structure analysis, allowing the conformational behavior of nine-membered carbocycles to be studied.     

Structures for monodisperse oligoamides. A novel structure for unfolded three-amide nylon 6 and relationship with a three-amide nylon 6 6

Three-amide oligomers of nylon 6 and nylon 6 6 have been investigated using electron microscopy (imaging and diffraction), X-ray diffraction, and computational modeling. A new crystal structure has been discovered for the three-amide oligomer of nylon 6. This material crystallizes from chloroform/dodecane solutions into an unfolded crystal form that has progressively sheared hydrogen bonding in two directions between polar (unidirectional) chains. This structure is quite different from the usual room temperature α-phase structure of chain-folded nylon 6 crystals, in which alternatingly sheared hydrogen bonding occurs between chains of opposite polarity in only one direction. The occurrence of this new structure illustrates the extent to which progressively sheared hydrogen bonding is preferred over alternatingly sheared hydrogen bonding. Indeed, the progressive hydrogen bonding scheme occurs in the three-amide nylon 6 material even though it requires a disruption to the lowest potential energy all-trans conformation of the chain backbone, and requires all the chains in each hydrogen-bonded layer to be aligned in the same direction. We believe the presence of chain folding, which necessarily incorporates adjacent chains of opposite polarity into the crystal structure, prevents the formation of this new crystal structure in the nylon 6 polymer. In contrast, the three-amide nylon 6 6 crystal structure is analogous to the polymeric nylon 6 6 α-phase structure, found in both fibers and chain-folded crystals, and consists of progressive hydrogen-bonded sheets which stack with a progressive shear. In both structures, the molecules (≈ 3 nm in length) form smectic C-like layers with well-orchestrated stacking of 2.2 nm to form a three-dimensional crystal. © 1998 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 36: 2849–2863, 1998     

The effects of hydrogen bonding on the liquid crystalline behavior of semiflexible poly(urethaneester)s

The peculiar liquid crystalline behavior of two poly(urethane-ester)s TDI-C6C4 and TDI-C6C8 is reported. Evidence is provided of the formation of two nematic mesophases, a cybotactic nematic and a conventional nematic mesophase, in TDI-C6C8 and of one cybotactic nematic mesophase in TDI-C6C4. IR spectroscopy indicates that different hydrogen bonded and non-bonded structures occur with varying temperature. The transition from the nematic cybotactic mesophase to the nematic mesophase, or to the isotropic phase, is accompanied by a substantial decrease of the strength of the hydrogen bonds. This is also reflected in the dynamic-mechanical behavior of these poly(urethane-ester)s which is similar to the one of slightly crosslinked thermoreversible networks.     

New approach in the synthesis of M6G

Morphine-6-glucuronide (M6G) is the primarily active metabolite of morphine, produced endogenously by the UGT enzyme, which displays analgesic activity. For this reason, M6G is a promising drug candidate for the treatment of severe pain. We described herein a new, efficient and scalable synthesis of M6G using dimorphinic derivatives. This preparation of M6G could be performed on multigram scale with good yield and high purity.     

Molar conductivity calculation of Li-ion battery electrolyte based on mode coupling theory

A method is proposed to calculate molar conductivity based on mode coupling theory in which the ion transference number is introduced into the theory. The molar conductivities of LiPF6, LiClO4, LiBF4, LiAsF6 in PC (propylene carbonate) are calculated based on this method. The results fit well to the literature data. This presents a potential way to calculate the conductivities of Li-ion battery electrolytes.     

Differentiation of isomeric 1,2-dihydroisoquinolin-4(3H)-ones by proton magnetic resonance of their 4-benzyl derivatives

Reaction of a 3,3-dimethyl-1,2-dihydroisoquinolin-4(3H)-one with a benzyl Grignard reagent gives a 4-benzyltetrahydroisoquinoline in which the signal of a 6-methoxy group suffers a large upfield shift in the ¹H NMR spectrum, whereas a 7-methoxy group is relatively unaffected. This effect can be used to determine whether an RO-substituent is in the 6- or 7-position and, in particular, to distinguish isomeric derivatives with different RO-groups in the 6- and 7-positions. The method will allow the mechanism of cyclization of 3,4-dimethoxybenzylaminoacetonitriles to be more fully elucidated.     

Theoretical investigation of intramolecular vibrational energy redistribution in highly excited HFCO

The present paper is devoted to the simulations of the intramolecular vibrational energy redistribution (IVR) in HFCO initiated by an excitation of the out-of-plane bending vibration [nnu(6)=2,4,6,...,18,20]. Using a full six-dimensional ab initio potential energy, the multiconfiguration time-dependent Hartree (MCTDH) method was exploited to propagate the corresponding six-dimensional wave packets. This study emphasizes the stability of highly excited states of the out-of-plane bending mode which exist even above the dissociation threshold. More strikingly, the structure of the IVR during the first step of the dynamics is very stable for initial excitations ranging from 2nu(6) to 20nu(6). This latter result is consistent with the analysis of the eigenstates obtained, up to 10nu(6), with the aid of the Davidson algorithm in a foregoing paper [Iung and Ribeiro, J. Chem. Phys. 121, 174105 (2005)]. The present study can be considered as complementary to this previous investigation. This paper also shows how MCTDH can be used to predict the dynamical behavior of a strongly excited system and to determine the energies of the corresponding highly excited states.     

Cold crystallization behavior of polyamide 6 in PS‐g‐PA6 graft copolymers

TEM micrographs show that the PA grafts of PS‐g‐PA6 graft copolymers, which are obtained directly by extracting homo‐PA6 out from the homo‐PA6/PS‐g‐PA6 blends, are in the form of wormlike structure. The wormlike PA6 domains can shrink into droplets after annealing at 250 °C for 15 min. The diameter of the droplet determined by TEM and SAXS is in the range of 50–60 nm. This article reports on a unique crystallization behavior of the PA6 grafts in PS‐g‐PA6 graft copolymers. In a DSC cooling scan, PA6 grafts do not crystallize from the melt with a cooling rate of 10 °C/min. However, there is a cold crystallization peak around 65 °C in the subsequent heating scan. This cold crystallization phenomenon, which has not yet been reported in the literature till now, follows well the homogeneous nucleation mechanism and is depressed at relatively slow cooling rates (2 °C/min) or even completely eliminated after annealing within a specific temperature range. It may be caused by the slow diffusion or transport rate of the less flexible PA6 grafts to the crystal fronts when crystallization takes place around its glass transition temperature. © 2009 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 48: 65–73, 2010     

Picosecond time-resolved cars in isotopically mixed crystals of benzene

Time-resolved coherent anti-Stokes Raman experiments are reported for the benzene crystal 991 cm^?1 mode and in mixed C₆H₆/C ₆D₆ crystals. Addition of C₆D₆ results in an increase in the rate at which the excitation is trapped. This is explained by the recent theory of Velsko and Hochstrasser which predicts that the trapping rate should undergo a maximum at some isotopic impurity concentration, consistent with observations from time and frequency domain studies. A proper convolution procedure for CARS experiments in the time domain is presented.     

N-acylation of 1,3-dimethyl-6-aminouracils. A reversal in the regiospecificity of an electrophilic substitution induced by an intramolecular proton-transfer

Electrophilic reactions of 1,3-dimethyl-6-aminouracil lead to 5-substituted derivatives. The introduction of a dialkylaminoalkylamino chain in the 6-position of 1,3-dimethyluracil modifies the regiospecificity of the acylation reaction to give N-6 acylated compounds. This reversal in acylation is induced by an intramolecular proton-transfer which introduces a change in the electron density of the enamine system. The cyclic transition state and the spatial conformation of the final products substantiate the proposed mechanism, on the basis of X-ray and ¹H nmr data.     

Intervalence charge transfer in mixed valence compound modified by the formation of a supramolecular complex

The electrochemical and spectroelectrochemical properties of N,N-diphenyl-1,4-phenylenediamine (PDA) were investigated in the absence and in the presence of 18-crown-6-ether (18C6) or dibenzo 24-crown-8-ether (DB24C8), in a solution of tetrabutylammonium hexafluorophosphate (TBAPF6) in acetonitrile and in the presence of trifluoroacetic acid (TFA) only for 18C6. In neutral acetonitrile, PDA undergoes two reversible oxidation processes, which lead first to the formation of the cation-radical considered as mixed valence (MV) compound, and then to the dicationic species. When 18C6 is added in the medium and depending on 18C6 concentration, cyclic voltammetry shows a marked shift to more cathodic potentials of the current waves of the second redox process only. This is attributed to a strong interaction between the PDA(+2) dication and two 18C6 molecules, leading to the formation of a supramolecular complex with an association constant value K(a) = 7.0 × 10(7) M(-2). The interaction of 18C6 with PDA(+2) dication has a direct effect on the PDA(+.) cation-radical corresponding to a decrease in the lifetime of the MV compound and of the intramolecular electron transfer rate when 18C6 is present. Indeed, it results in a large decrease in the intervalence charge transfer (IV-CT) between the two amine centers in the MV compound (k(th) = 1.35 × 10(10) s(-1) in 18C6-free neutral solution containing 5.0 × 10(-4) M PDA, and k(th) = 3.6 × 10(9) s(-1) in the same medium at [18C6]/[PDA] = 20/1). And the comproportionation constant K(co) falls from 6.0 × 10(6) in 18C6-free solution to 1.6 × 10(3) at [18C6]/[PDA] = 20/1. In acidified acetonitrile and when TFA concentration is increased, PDA still shows the two successive and reversible oxidation processes, but both are shifted to more anodic potentials. However, when 18C6 is added, the two oxidation waves shift to more cathodic potentials, indicating an interaction of all protonated PDA redox states with 18C6, resulting in the formation of supramolecular complexes. In the presence of TFA, the value of K(co) is decreased to 4.3 × 10(4), but it remains unchanged when 18C6 is added, indicating no change in the lifetime of the MV compound. In this medium, IV-CT in the MV compound is greater with 18C6 (k(th) = 2.3 × 10(10) s(-1) for [18C6]/[PDA] = 20/1) than without (k(th) = 1.4 × 10(9) s(-1)), which indicates a more important IV-CT rate when 18C6 is present. The results show for the first time that is it possible to control the IV-CT rate, through the lifetime and the potential range where the MV compound is the most important. This control is not obtained as usual by chemical modification of the structure of the starting molecule, but by varying either the acidity or the 18C6 concentration as external stimuli, which lead to reversible formation/dissociation of a supramolecular complex species. Moreover, we also studied the electrochemical properties of PDA in the presence of wider crown ether such as DB24C8. We showed that PDA undergoes the same electrochemical behavior with DB24C8 than with 18C6 in neutral organic medium (K(a) = 2.9 × 10(3) M(-1)). This result suggests that the complexation between the electrogenerated PDA(+2) dication and the crown ethers may occur through face-to-face mode rather than rotaxane mode even with DB24C8 which is supposed to form inclusion complexes.