Molecular Recognition of Rosmarinic Acid from Salvia sclareoides Extracts by Acetylcholinesterase: A New Binding Site Detected by NMR Spectroscopy

Acetylcholinesterase (AChE) inhibition is one of the most currently available therapies for the management of Alzheimer’s disease (AD) symptoms. In this context, NMR spectroscopy binding studies were accomplished to explain the inhibition of AChE activity by Salvia sclareoides extracts. HPLC‐MS analyses of the acetone, butanol and water extracts eluted with methanol and acidified water showed that rosmarinic acid is present in all the studied samples and is a major constituent of butanol and water extracts. Moreover, luteolin 4′‐O‐glucoside, luteolin 3′,7‐di‐O‐glucoside and luteolin 7‐O‐(6′′‐O‐acetylglucoside) were identified by MS² and MS³ data acquired during the LC‐MSⁿ runs. Quantification of rosmarinic acid by HPLC with diode‐array detection (DAD) showed that the butanol extract is the richest one in this component (134 μg mg^?1 extract). Saturation transfer difference (STD) NMR spectroscopy binding experiments of S. sclareoides crude extracts in the presence of AChE in buffer solution determined rosmarinic acid as the only explicit binder for AChE. Furthermore, the binding epitope and the AChE‐bound conformation of rosmarinic acid were further elucidated by STD and transferred NOE effect (trNOESY) experiments. As a control, NMR spectroscopy binding experiments were also carried out with pure rosmarinic acid, thus confirming the specific interaction and inhibition of this compound against AChE. The binding site of AChE for rosmarinic acid was also investigated by STD‐based competition binding experiments using Donepezil, a drug currently used to treat AD, as a reference. These competition experiments demonstrated that rosmarinic acid does not compete with Donepezil for the same binding site. A 3D model of the molecular complex has been proposed. Therefore, the combination of the NMR spectroscopy based data with molecular modelling has permitted us to detect a new binding site in AChE, which could be used for future drug development.     

Shift Reagents in NMR Spectroscopy

The number of possible applications of NMR spectroscopy has rapidly increased during the past few years. New fields of applications have been opened by the development of supraconducting solenoids and various spin-decoupling techniques and by the method of “pulsed Fourier transform NMR-spectroscopy”. These methods originate mainly from progress in instrumentation. Recently, another “technique” has been introduced into NMR spectroscopy, which—principally on the basis of chemical and spectroscopic experience—is much less expensive but nevertheless useful. The basic principles, background, and most important applications of this method, known as the “NMR-shift-reagent technique”, form the subject of this paper.     

SEAL by NMR: Glyco‐Based Selenium‐Labeled Affinity Ligands Detected by NMR Spectroscopy

We report a method for the screening of interactions between proteins and selenium‐labeled carbohydrate ligands. SEAL by NMR is demonstrated with selenoglycosides binding to lectins where the selenium nucleus serves as an NMR‐active handle and reports on binding through ⁷⁷Se NMR spectroscopy. In terms of overall sensitivity, this nucleus is comparable to ¹³C NMR, while the NMR spectral width is ten times larger, yielding little overlap in ⁷⁷Se NMR spectroscopy, even for similar compounds. The studied ligands are singly selenated bioisosteres of methyl glycosides for which straightforward preparation methods are at hand and libraries can readily be generated. The strength of the approach lies in its simplicity, sensitivity to binding events, the tolerance to additives and the possibility of having several ligands in the assay. This study extends the increasing potential of selenium in structure biology and medicinal chemistry. We anticipate that SEAL by NMR will be a beneficial tool for the development of selenium‐based bioactive compounds, such as glycomimetic drug candidates.     

Modern Pulse Methods in High-Resolution NMR Spectroscopy

The introduction of Fourier transform methods has not only remarkably enhanced the sensitivity of high-resolution NMR spectroscopy, thus allowing measurements to be made on less sensitive nuclei of the Periodic Table, but also has paved the way for the development of a large number of new experimental techniques. On the one hand, procedures already known have been improved and can now be performed more rapidly, and, on the other, completely new experimental approaches have become available. This situation resulted mainly from the introduction of programmable pulse transmitters and the separation of the experiment into preparation, evolution, and detection. In particular, the concept of two-dimensional spectroscopy has opened up new possibilities important for the analysis of complicated spectra and is able to provide information previously not accessible. As elsewhere, optimum application of the techniques and correct interpretation of the results require sound understanding of the underlying physical principles. Since a rigorous mathematical treatment is complicated and does not necessarily improve the comprehensibility, this article attempts to give an illustrative presentation of the new pulse techniques within the framework of the Bloch vector model. After a short introduction covering the basic principles, one-dimensional pulse techniques that can be applied using standard experimental equipment are dealt with. The main areas of application are signal assignment, sensitivity enhancement for measurements on less abundant nuclei, and selective excitation of individual resonances. Subsequently, the various techniques of two-dimensional NMR spectroscopy are treated: these enable shift correlations for different types of nuclei to be made, the presentation of spin multiplets without overlap, and the analysis of geometrical relations as well as of chemical exchange phenomena.     

Giant Residual Dipolar 13C–1H Couplings in High‐Spin Organoiron Complexes: Elucidation of Their Structures in Solution by 13C NMR Spectroscopy

High‐spin Fe^II–alkyl complexes with bis(pyridylimino)isoindolato ligands were synthesized and their paramagnetic ¹H and ¹³C NMR spectra were analyzed comprehensively. The experimental ¹³C—¹H coupling values are temperature (T^?1)‐ as well as magnetic‐field (B²)‐dependent and deviate considerably from typical scalar ¹J_CH couplings constants. This deviation is attributed to residual dipolar couplings (RDCs), which arise from partial alignment of the complexes in the presence of a strong magnetic field. The analysis of the experimental RDCs allows an unambiguous assignment of all ¹³C NMR resonances and, additionally, a structural refinement of the conformation of the complexes in solution. Moreover the RDCs can be used for the analysis of the alignment tensor and hence the tensor of the anisotropy of the magnetic susceptibility.     

Progress in Hyperpolarized Ultrafast 2D NMR Spectroscopy

An important development in the field of NMR spectroscopy has been the advent of hyperpolarization approaches, capable of yielding nuclear spin states whose value exceeds by orders‐of‐magnitude what even the highest‐field spectrometers can afford under Boltzmann equilibrium. Included among these methods is an ex situ dynamic nuclear polarization (DNP) approach, which yields liquid‐phase samples possessing spin polarizations of up to 50 %. Although capable of providing an NMR sensitivity equivalent to the averaging of about 1 000 000 scans, this methodology is constrained to extract its “superspectrum” within a single—or at most a few—transients. This makes it a poor starting point for conventional 2D NMR acquisition experiments, which require a large number of scans that are identical to one another except for the increment of a certain t₁ delay. It has been recently suggested that by merging this ex situ DNP approach with spatially encoded “ultrafast” methods, a suitable starting point could arise for the acquisition of 2D spectra on hyperpolarized liquids. Herein, we describe the experimental principles, potential features, and current limitations of such integration between the two methodologies. For a variety of small molecules, these new hyperpolarized ultrafast experiments can, for equivalent overall durations, provide heteronuclear correlation spectra at significantly lower concentrations than those currently achievable by conventional 2D NMR acquisitions. A variety of challenges still remain to be solved before bringing the full potential of this new integrated 2D NMR approach to fruition; these outstanding issues are discussed.     

Detection of Hindered Rotation and Inversion by NMR Spectroscopy

Rotations and inversions in organic molecules are readily recognizable from the temperature dependence of the NMR spectra. The study of the effects of substituents on the activation barriers of such processes permits the elucidation of reaction mechanisms, and the stability limits of isomers can also be determined. The knowledge of the stability limits is necessary for the specific synthesis of stable rotamers and invertomers.     

Biomolecular DNP‐Supported NMR Spectroscopy using Site‐Directed Spin Labeling

Dynamic nuclear polarization (DNP) has been shown to greatly enhance spectroscopic sensitivity, creating novel opportunities for NMR studies on complex and large molecular assemblies in life and material sciences. In such applications, however, site‐specificity and spectroscopic resolution become critical factors that are usually difficult to control by current DNP‐based approaches. We have examined in detail the effect of directly attaching mono‐ or biradicals to induce local paramagnetic relaxation effects and, at the same time, to produce sizable DNP enhancements. Using a membrane‐embedded ion channel as an example, we varied the degree of paramagnetic labeling and the location of the DNP probes. Our results show that the creation of local spin clusters can generate sizable DNP enhancements while preserving the intrinsic benefits of paramagnetic relaxation enhancement (PRE)‐based NMR approaches. DNP using chemical labeling may hence provide an attractive route to introduce molecular specificity into DNP studies in life science applications and beyond.     

Probing Helical Hydrophobic Binding Sites in Branched Starch Polysaccharides Using NMR Spectroscopy

Branched starch polysaccharides are capable of binding multiple hydrophobic guests, but their exploitation as multivalent hosts and in functional materials is limited by their structural complexity and diversity. Linear α(1–4)‐linked glucose oligosaccharides are known to bind hydrophobic guests inside left‐handed single helices in solution and the solid state. Here, we describe the development of an amphiphilic probe that binds to linear α(1–4)‐linked glucose oligosaccharides and undergoes a conformational switch upon complexation, which gives rise to dramatic changes in the ¹H NMR spectrum of the probe. We use this probe to explore hydrophobic binding sites in the branched starch polysaccharides amylopectin and β‐limit dextrin. Diffusion‐ordered (DOSY), nuclear Overhauser effect (NOESY) and chemical shift perturbation (HSQC) NMR experiments are utilised to provide evidence that, in aqueous solution, branched polysaccharides bind hydrophobic guests in well‐defined helical binding sites, similar to those reported for complexation by linear oligosaccharides. By examining the binding affinity of the probe to systematically enzymatically degraded polysaccharides, we deduce that the binding sites for hydrophobic guests can be located on internal as well as external branches and that proximal α(1–6)‐linked branch points weaken but do not prevent complexation.     

In Situ and Ex Situ Low‐Field NMR Spectroscopy and MRI Endowed by SABRE Hyperpolarization

By using 5.75 and 47.5 mT nuclear magnetic resonance (NMR) spectroscopy, up to 10⁵‐fold sensitivity enhancement through signal amplification by reversible exchange (SABRE) was enabled, and subsecond temporal resolution was used to monitor an exchange reaction that resulted in the buildup and decay of hyperpolarized species after parahydrogen bubbling. We demonstrated the high‐resolution low‐field proton magnetic resonance imaging (MRI) of pyridine in a 47.5 mT magnetic field endowed by SABRE. Molecular imaging (i.e. imaging of dilute hyperpolarized substances rather than the bulk medium) was conducted in two regimes: in situ real‐time MRI of the reaction mixture (in which pyridine was hyperpolarized), and ex situ MRI (in which hyperpolarization decays) of the liquid hyperpolarized product. Low‐field (milli‐Tesla range, e.g. 5.75 and 47.5 mT used in this study) parahydrogen‐enhanced NMR and MRI, which are free from the limitations of high‐field magnetic resonance (including susceptibility‐induced gradients of the static magnetic field at phase interfaces), potentially enables new imaging applications as well as differentiation of hyperpolarized chemical species on demand by exploiting spin manipulations with static and alternating magnetic fields.     

Disentangling Complex Mixtures of Compounds with Near‐Identical 1H and 13C NMR Spectra using Pure Shift NMR Spectroscopy

The thorough analysis of highly complex NMR spectra using pure shift NMR experiments is described. The enhanced spectral resolution obtained from modern 2D HOBS experiments incorporating spectral aliasing in the ¹³C indirect dimension enables the distinction of similar compounds exhibiting near‐identical ¹H and ¹³C NMR spectra. It is shown that a complete set of extremely small Δδ(¹H) and Δδ(¹³C) values, even below the natural line width (1 and 5 ppb, respectively), can be simultaneously determined and assigned.     

Structure of Framework Aluminum Lewis Sites and Perturbed Aluminum Atoms in Zeolites as Determined by 27Al{1H} REDOR (3Q) MAS NMR Spectroscopy and DFT/Molecular Mechanics

Zeolites are highly important heterogeneous catalysts. Besides Brønsted SiOHAl acid sites, also framework Al_FR Lewis acid sites are often found in their H‐forms. The formation of Al_FR Lewis sites in zeolites is a key issue regarding their selectivity in acid‐catalyzed reactions. The local structures of Al_FR Lewis sites in dehydrated zeolites and their precursors—“perturbed” Al_FR atoms in hydrated zeolites—were studied by high‐resolution MAS NMR and FTIR spectroscopy and DFT/MM calculations. Perturbed framework Al atoms correspond to (SiO)₃AlOH groups and are characterized by a broad ²⁷Al NMR resonance (δ_i=59–62 ppm, C_Q=5 MHz, and η=0.3–0.4) with a shoulder at 40 ppm in the ²⁷Al MAS NMR spectrum. Dehydroxylation of (SiO)₃AlOH occurs at mild temperatures and leads to the formation of Al_FR Lewis sites tricoordinated to the zeolite framework. Al atoms of these (SiO)₃Al Lewis sites exhibit an extremely broad ²⁷Al NMR resonance (δ_i≈67 ppm, C_Q≈20 MHz, and η≈0.1).     

A 1H NMR and molecular modelling investigation of diastereotopic methylene hydrogen atoms

The ¹H NMR spectra of methyl 3‐bromo‐2‐methylpropionate (1a) and the corresponding chloro compound (2a) show no long‐range coupling between the methyl and methylene protons. In contrast, in the analogous dihalocompounds, methyl 2,3‐dibromo‐2‐methylpropionate (1b) and methyl 2,3‐dichloro‐2‐methylpropionate (2b), one of the methylene protons exhibits a large ⁴J_HH coupling (0.8 Hz) to the methyl group, but the other proton shows no observable splitting. This can be explained quantitatively by calculations of the conformational preferences in these compounds combined with the known orientation dependence of the ⁴J_HHcouplings. One conformer predominates in the dihalo compounds 1b and 2b, and this is responsible for the ⁴J_HH coupling. In 1a and 2a all three conformers are populated and the ⁴J_HH couplings average to zero. The technique is a potentially general method of unambiguously assigning diastereotopic methylene protons. Copyright © 2002 John Wiley & Sons, Ltd.     

Fluorinated Carbohydrates as Lectin Ligands: Versatile Sensors in 19F‐Detected Saturation Transfer Difference NMR Spectroscopy

As a novel approach for studying carbohydrate–lectin interactions spectroscopically, we combine the resolution and specificity of ¹⁹F‐detected NMR spectroscopy with the sensitivity of the saturation transfer difference (STD) technique. The resulting background‐free ¹⁹F‐STD spectra open a promising perspective for broad application with medical relevance, for example, in drug discovery.

     

Measurement of pH by NMR Spectroscopy in Concentrated Aqueous Fluoride Buffers

An NMR spectroscopic technique has been developed to give rapid, accurate pH measurements on tenth-milliliter samples of concentrated acidic aqueous solutions buffered by fluoride ion in the pH 1.5-4.5 range. The fluoride ¹⁹F chemical shift has been calibrated as a function of pH at 0.1 and 1.0 M concentration by reference to an internal 3-fluoropyridine standard. Subsequent measurements of fluoride buffer pH required no additives and only two NMR spectra in the presence of an external reference standard.