Solid state 19F NMR parameters of fluorine-labeled amino acids. Part II: aliphatic substituents

A representative set of amino acids with aliphatic 19F-labels has been characterized here, following up our previous compilation of NMR parameters for single 19F-substituents on aromatic side chains. Their isotropic chemical shifts, chemical shift tensor parameters, intra-molecular 19F dipole-dipole couplings and temperature-dependent T1 and T2 relaxation times were determined by solid state NMR on twelve polycrystalline amino acid samples, and the corresponding isotropic 19F chemical shifts and scalar couplings were obtained in solution. Of particular interest are amino acids carrying a trifluoromethyl-group, because not only the 19F chemical shift but also the intra-CF3 homonuclear dipolar coupling can be used for structural studies of 19F-labeled peptides and proteins. The CF3-groups are further compared with CH2F-, CD2F-, and CD3-groups, using both 19F and 2H NMR to describe their motional behavior and to examine the respective linebroadening effects of the protonated and deuterated neighbors. We have also characterized two unnatural amino acids in which a CF3-label is rigidly connected to the backbone by a phenyl or bicyclopentyl moiety, and which are particularly well suited for structure analysis of membrane-bound polypeptides. The 19F NMR parameters of the polycrystalline amino acids are compared with data from the correspondingly labeled side chains in synthetic peptides.     

Solid state NMR interaction parameters of oxygens linking titanium and silicon in crystalline cyclic titanodiphenylsiloxanes

17O static and magic angle spinning NMR spectra are reported from three crystalline cyclic titanodiphenylsiloxanes at magnetic fields of 5.6, 14.1, and 17.6 T. These compounds allow the NMR parameters characteristic of Ti-O-Si environments to be determined. It appears from these data that the quadrupole interaction (C(Q)) of such environments is in the range of 3-3.5 MHz and that Si-O-TiO3 sites are less shifted than Si-O-TiO5. The relatively large isotropic chemical range observed suggests that for structurally and atomically disordered titanosilicate-based materials the very highest applied magnetic field may not produce the best 17O solid state NMR spectra. There appears to be a correlation between the 17O shift and Ti-O bondlength.     

Solid state 33S NMR of inorganic sulfides

Solid state 33S NMR spectra of a variety of inorganic sulfides have been obtained at magnetic field strengths of 4.7 and 17.6T. Spectra acquired with magic angle spinning show considerable improvements in sensitivity and resolution when compared with static spectra. Multiple factors are considered when analyzing the spectral line widths, including; magnetic field inhomogeneity, dipolar coupling, chemical shift anisotropy, chemical shift dispersion (CSD), T(2) relaxation, and quadrupolar coupling. Quadrupolar coupling was expected to be the dominant line broadening mechanism. However, for most of the samples CSD was the prevailing line broadening mechanism. Thus, for many of the metal sulfides studied at a high magnetic field strength, the line widths were actually larger than those observed in the spectra at low field. This is atypical in solid state 33S NMR. Solid state 33S spin-lattice (T(1)) and spin-spin (T(2)) relaxation rates were measured for the first time and are discussed. This information will be useful in future efforts to use 33S NMR in the compositional and structural analysis of sulfur containing materials.     

Solid state NMR study of nanodiamond surface chemistry

Solid state NMR measurements using 13C, 1H and 19F nuclei (MAS, CP-MAS) underline the surface chemistry of nanodiamonds from different synthesis (detonation, high pressure high temperature and shock compression). The comparison of the spin-lattice relaxation times T1 and physicochemical characterization (spin densities of dangling bonds, specific surface area and Raman and infrared spectroscopies) for the various samples, as synthesized, chemically purified and fluorinated allows the nature and the location of the various groups, mainly C-OH, C-H and C-F to be investigated. C-OH groups are located only on the surface whereas C-H and dangling bonds seem to be distributed in the whole volume. Fluorination was studied as a chemical treatment for purification and change of the hydrophobicity through the conversion of the C-OH groups into covalent C-F bonds.     

氟苯类化合物19F NMR化学位移的计算

提出了计算氟苯类化合物¹⁹F NMR化学位移的公式：δ_cal（¹⁹F）=-113.5+Δo+Δm+Δp+C, 结合最小二乘法通过线性回归得到了20种取代基参数, 计算结果以160种氟苯类化合物的263个¹⁹F NMR化学位移数据为样本点作回归检验,置信度为99.5%,计算值与实验值的平均偏差为0.628,计算值与实验值的标准偏差为4.720,约有93.2%的¹⁹F NMR化学位移计算值的计算误差<7.0（相对误差<0.7%）.     

The role of basic amino acids in the molecular recognition of hydroxyapatite by statherin using solid state NMR

Organisms use proteins such as statherin to control the growth of hydroxyapatite (HAP), which is the principal component of teeth and bones. Though much emphasis has been placed on the acidic character of these proteins, the role of their basic amino acids is not well understood. In this work, solid state nuclear magnetic resonance was used to probe the interaction of the basic arginine side chains with the HAP surface. Statherin samples were individually labeled at each arginine site, and the distance to the surface was measured using the Rotational Echo DOuble Resonance (REDOR) technique. The results indicate a strong coupling between the R9 and R10 residues and the phosphorus atoms on the surface, with internuclear distances of 4.62 ± 0.29 Å and 4.53 ± 0.16 Å, respectively. Conversely, results also indicate weak coupling between R13 and the surface, suggesting this residue is more removed from the surface than R9 and R10. Combining these results with previous data, a new model for the molecular recognition of HAP by statherin is constructed.     

A Conversation with Robert F. Christy – Part I

Robert F. Christy, Institute Professor of Theoretical Physics Emeritus at Caltech, recalls his childhood in British Columbia; his undergraduate years at the University of British Columbia; his graduate work with J. Robert Oppenheimer at Berkeley; and his work on the Manhattan Project, first with Enrico Fermi at the Metallurgical Laboratory of the University of Chicago and then as a member of the Theoretical Division at Los Alamos.     

Experimental evidence of chiral crown ether complexation with aromatic amino acids

The complexation of L ‐ and D ‐enantiomers of phenylglycine, phenylalanine, and tryptophan with D ‐mannonaphto‐crown‐6‐ether in methanol solution was studied by NMR and isothermal titration calorimetry (ITC) at 298.15 K. The total heat effects attributed to the binding phenomena were measured in the range of 1.8 to 7.7 mJ, and the complexation was found stereo‐specific. The binding topologies were estimated basing on ¹H 2D‐ROESY experiments. The analysis of Job plots obtained from ¹H NMR‐monitored titrations proved the coexistence of 1:1 and 1:2 (crown ether:amino acids) complexes, which thermodynamic parameters, K_s, ΔG, ΔH°, and TΔS were determined with the aid of ITC. The 1:1 complexes were found enthalpically stabilized, generally by electrostatic interactions between the charged NH group of amino acid and crown ether macrocyclic moiety, while the binding of the second amino acid molecule was driven entropically due to solvatophobic effect. Strong enthalpy–entropy compensation points towards the uniform binding mode of all complexes studied. The mode of complex formation was found solvent dependent. For phenylalanine guest studied in various solvent systems, in contrast to the aqueous media, the noticeable chiral recognition is observed in methanol solution, and the complex stoichiometry (1:2 ether:Phe) differs from the 2:1 one, determined previously for the same host‐guest system in water (J. Thermal. Anal. Cal. 2006; 83: 575–578). Copyright © 2007 John Wiley & Sons, Ltd.     

Solid state NMR characterisation of the thermal transformation of Fuller''s Earth

Fuller's Earth, a dioctahedral calcium montmorillonite clay mineral of the smectite group, undergoes thermal transformation via a series of complex intermediate states that are highly structurally disordered. Fuller's Earth is a commercially significant material with considerable levels of paramagnetic iron (Fe³⁺) substitution into octahedrally coordinated metal sites. Despite the high iron-content (˜ 10% of the occupied octahedral metal sites) in these samples ²⁹Si and ²⁷Al magic angle spinning (MAS) NMR spectra of sufficient quality are obtained to reveal structural changes in samples that have been heated from room temperature to 1400 °C. Two major structural changes are clearly observed, initial dehydroxylation and then collapse of the layer structure into more highly connected silica-rich domains and an alumina-rich phase.     

Susceptibility corrections in solid state NMR experiments with oriented membrane samples. Part II: theory

In solid state NMR analysis of oriented biomembranes the samples typically have the shape of a rectangular block, formed by stacking a number of glass slides coated with the membranes under investigation. Reference material may be provided internally in the volume of the block or as an external layer on its surface, as described in the accompanying paper [J. Magn. Reson. 164 (2003) 104-114]. The demagnetizing field resulting in such non-spheroidal samples is inhomogeneous. It shifts and broadens the NMR lines of both the sample and of the reference, as compared to the ideal of a spherical sample. The magnitude of these effects is typically of the order of a few ppm. To determine the necessary corrections, a general analysis is presented here for the demagnetizing field of a layered sample of rectangular block geometry, with the normal of the layers parallel to the main field or tilted about an axis of the block. The correction to the line position of the block sample is found to be approximately equal to that of the spheroid which can be inscribed into the block, and for which the correction is well known. For an external reference layer, placed on top of the block, the correction can be found by the same approximation, invoking a simple mirror concept. The layered structure of the block can be accounted for by using an average magnetic susceptibility. Sample and support materials contribute to that average according to their volume filling factors. If the sample material is anisotropic at the molecular level, as e.g. lipid bilayers are, the resulting anisotropy of the block is reduced by the filling factor of the sample material.     

A 1H/19F minicoil NMR probe for solid-state NMR: application to 5-fluoroindoles

We show that it is feasible to use a minicoil for solid-state 19F 1H NMR experiments that has short pulse widths, good RF homogeneity, and excellent signal-to-noise for small samples while using low power amplifiers typical to liquid-state NMR. The closely spaced resonant frequencies of 1H and 19F and the ubiquitous use of fluorine in modern plastics and electronic components present two major challenges in the design of a high-sensitivity, high-field 1H/19F probe. Through the selection of specific components, circuit design, and pulse sequence, we were able to build a probe that has low 19F background and excellent separation of 1H and 19F signals. We determine the principle components of the chemical shift anisotropy tensor of 5-fluoroindole-3-acetic acid (5FIAA) and 5-fluorotryptophan. We also solve the crystal structure of 5FIAA, determine the orientation dependence of the chemical shift of a single crystal of 5FIAA, and predict the 19F chemical shift based on the orientation of the fluorine in the crystal. The results show that this 1H/19F probe is suitable for solid-state NMR experiments with low amounts of biological molecules that have been labeled with 19F.     

Magnesium chloride: an efficient 13C NMR relaxation agent for amino acids and some carboxylic acids

A series of amino acids and carboxylic acids were determined by 13C NMR spectroscopy. The results showed that addition of 3 M MgCl(2), led to shortening of relaxation time and 13C NMR integral area of samples was well proportional to the number of carbon atoms with reliability more than 95%. So MgCl(2) is proposed as an efficient relaxation agent for analysis of amino acids and some carboxylic acids.     

A solid-state N magic-angle spinning NMR study of some amino acids

Experimental strategies for the acquisition of high-quality 14N magic-angle spinning (MAS) NMR spectra of the simple amino acids, which exhibit 14N quadrupole coupling constants (C(Q)) on the order of 1.2 MHz, are devised. These are the first useful 14N MAS spectra reported for nitrogen compounds having a C(Q)(14N) value in excess of 1 MHz. The complete manifolds of spinning sidebands (ssbs), i.e., about 300 ssbs for a spinning frequency of 6.0 kHz, have been observed in the 14N MAS NMR spectra of a series of amino acids. In their crystal structure these amino acids all exhibit the zwitterionic form and thus the 14N MAS NMR spectra represent those of a rotating -NH(3)(+) group and not of an amino (-NH(2)) group. Computer simulations combined with fitting of simulated to the experimental ssb intensities result in the determination of precise values for the 14N quadrupole coupling (C(Q)) and its associated asymmetry parameter (eta(Q)) for the nitrogen sites in these molecules. For some of the amino acids the 14N MAS NMR spectra exhibit overlap between the manifolds of ssbs from two different nitrogen sites in accordance with their crystal structures. Computer analysis of these spectra results in two different sets of (C(Q), eta(Q)) values which mainly differ in the magnitudes for eta(Q).