Dynamic changing features of the molecular face for interaction of a rare gas atom with a hydrogen molecule

We perform a systematical investigation on the dynamic changing feature of the molecular shape and size and electron density distribution in the process of a rare‐gas atom (He, Ne, Ar, and Kr) approaching a hydrogen molecule by an ab initio method. In terms of the molecular face (MF) theory, the polarization effect in the above processes is vividly demonstrated. There is a good linear correlation between our average variation rate (S_aver) of molecular intrinsic characteristic radius at the contacting point and the experimental polarizability of the rare‐gas atoms. This indicates that the MF theory can well represent the intermolecular polarization effect. Interestingly, the pictures of shape changing, charge‐flow, and exchange repulsion processes especially on the reacting active areas have been clearly observed. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

惰性气体原子与HF分子相互作用的分子形貌动态研究

研究了惰性气体原子(Rg=He,Ne,Ar和Kr)分别向HF分子两端原子接近过程中分子形貌的动态变化,使用MELD精密从头算方法中的CISD/6-311++G(2d,2p)方法,计算了FH-Rg和HF-Rg2个二聚体的单电子作用势、分子平面的边界轮廓以及相应界面上的电子密度.研究表明,惰性气体原子Rg分别向HF的两端接近时,双方的外形在接近的方向上均有伸手欢迎的表示,分子的前沿电子密度也相应的发生变化,对惰性键提供了一种新的认识.     

Correlation entropy of the H2 molecule

Correlation of a quantum many-body state makes the one-particle density matrix nonidempotent. Therefore, the Shannon entropy of the natural occupation numbers measures the correlation strength on the one-particle level. Here, it is shown how this general idea of a correlation entropy must be adapted for two-electron systems in view of conservation laws which mix Slater determinants even in the noninteracting limit. Results are presented for the correlation entropy s of H₂ as a function of the nucleus-nucleus separation R. In the ground state, the entropy of the spatial factor of the wave function maximizes 1.7 bohr beyond the Coulson-Fischer separation. The role of the correlation entropy in density functional theory is also discussed. © 1997 John Wiley & Sons, Inc.     

Direct MP2 molecular dynamics studies of H atom reaction with CD4 and CH4

The mechanism and dynamics of the H + CD₄ → CD₃ + HD (I) and H + CH₄ → CH₃ + H₂ (II) reactions have been investigated by electronic structure methods. The minimum‐energy path and vibrational frequencies along the intrinsic reaction coordinate are calculated at MP2/cc‐pVDZ level. Energy distributions of the products are also obtained by the direct classical trajectory calculations at the MP2/ cc‐pVDZ level. It is found that most of the available energy appears as product translational energy, and very little of the available energy is partitioned into internal excitation of the HD (H₂) product for reaction I (II), which is in agreement with the experimental evidence. The results indicate that the experimental results could be reproduced by the direct MP2 molecular dynamics calculations. The rotational state distributions of the products show the HD (H₂) products are formed with lower rotational quantum numbers than the CD₃ (CH₃) products. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

The atom in a molecule as a mereological construct in chemistry

In this paper I discuss some consequences and manifestations of a mereology of structured wholes in chemistry, with particular reference to the concept of atoms in molecules.     

Self-consistent-field variational approach to the interaction between a polymer and a small molecule

A variational SCF treatment based on a perturbational concept is developed and applied to the interaction between trans-polyacetylene and a small molecule. The validity of the present method is examined by comparing the results with those from the conventional tight-binding SCF crystal orbital method. The interaction energies and charge distributions obtained are in good agreement between the two methods. This result suggests that the present variational approach is promising for application to complicated interactions between a polymer and impurities.     

硅沸石团簇分子与H_2O相互作用的密度泛函研究

采用密度泛函广义梯度近似(GGA)的PW91方法和全电子基组DNP对硅沸石单元晶胞分子簇进行几何结构优化。通过键长、电子结构参数和Fukui指数计算,了解团簇Al取代前后的变化。通过键能、吸附能、偶极距等考察H2O分子与团簇模型上的相互作用。结果表明:团簇分子在Al取代之后,给电子能力变弱。与H2O作用后,结合能减小,稳定性变弱;Si/Al-O平均键长增长,Al离子增加了团簇分子的极化作用。     

Cluster models of interaction of a fluorine atom with the (111) face of silicon

The AMI method has been used in calculating activation energies of desorption of surface complexes from the (111) face of silicon. For the desorption of a surface Si atom, the desorption of an FSi radical containing this Si atom when a fluorine atom implanted in the surface layer is present, and the desorption of the FSi radical when such a fluorine atom is not present, the values found for the activation energy are 8.0, 0.9, and 6.4 eV, respectively.Translated from Teoreticheskaya i Éksperimental'naya Khimiya, Vol. 28, No. 2, pp. 144–147, March–April, 1992.     

Observable quasi-bound states of the H2 molecule

Characteristic parameters (energetic positions, widths, etc.) of the 23 spectroscopically observed (or potentially observable) quasi-bound energy levels for the ground state H(2) molecule are determined with high accuracy. The recent advances concerning nonadiabatic, relativistic, and quantum electrodynamical corrections have been taken into consideration. Theoretical approach is based on the careful investigation of the energy dependences of the real stationary scattering-state wave functions (their phase shifts and amplitudes). These energy dependences can be very accurately fitted to simple analytic formulas resulting from the quantum scattering theory. General criteria for the assignment of quasi-bound states are discussed and a new criterion is proposed, which excludes too broad and ambiguous resonances. To implement the proposed approach, a special high-precision computational method was used, which is described in full detail.     

Non-Born-Oppenheimer treatment of the H2 Hookean molecule

We show that the exact non-Born-Oppenheimer Schrodinger equation for the Hookean diatomic molecule H2 (a two-proton, two-electron system where the electron-proton interaction is harmonic while the proton-proton and electron-electron interactions are Coulombic) can be decoupled into equations describing the relative motion of the electrons, the relative motion of nuclei, the motion of a collective mode representing a three-dimensional harmonic oscillator, and the motion of a free particle expressed as a linear combination of the individual center-of-mass coordinates of the nuclei and electrons. Analytic solutions to the relative motion of electrons can be readily obtained for the given values of the harmonic coupling constant. However, exact analytic solutions to the equation for the relative motion of the nuclei cannot be obtained simultaneously due to the fact that the harmonic constants in these two equations are coupled. For this reason, we present for the relative nuclear motion approximate analytic wave functions, one of them obtained variationally and the other by a series solution where the coefficients are determined recursively. We also explore a variational solution to the Taylor-series expansion of the nuclear interaction potential. Properties of the electronic and nuclear intracule densities are examined at different values of the coupling constant. An interesting result of the present non-Born-Oppenheimer treatment of this harmonic model is the fact that the relative nuclear motion occurs in a highly correlated regime. This leads in a natural way to a spatial localization of the nuclei akin to Wigner electronic crystallization.     

Excited electronic and ionized states of the nitramide molecule, H2NNO2, studied by the symmetry-adapted-cluster configuration interaction method

Symmetry-adapted-cluster configuration interaction (SAC-CI) wave functions were employed to compute 16 singlet and 13 triplet vertical transitions, and 14 ionized states including relative intensities of the nitramide molecule, H₂NNO₂. This molecule is the simplest neutral closed-shell molecule which has an N–NO₂ bond and is a member of the nitramine family, R,R′N(NO₂), an important class of energetic materials with practical applications. The present nitramide results showed strong similarities with the ones of the N, N-dimethylnitramine molecule, which has also an N–NO₂ bond and was previously studied using the SAC-CI method. Experimental ultraviolet and photoelectron band spectra of the nitramide molecule could be successfully assigned. All the singlet transitions have valence character. The computed singlet and triplet transitions, excepting a singlet one, result from excitation originating in the four highest occupied molecular orbitals, which have close energies. Most of the singlet and triplet transitions involved mixing of singly excited configurations. The strongest computed transition, at 6.8 eV, is a mixture of two nπ_NO2 → π^* configurations corresponding to excitations from the highest occupied molecular orbital (HOMO) to the first two virtual orbitals and has an optical oscillator strength value of 0.2665. The computed ionized states described the whole measured spectrum, have excellent agreement when compared with the measured ionization potentials and revealed an inversion of the ordering of the first states not expected according to Koopmanns’ theorem, thereby showing the limitations of the latter.     

On the PES for the interaction of an H atom with an H chemisorbate on a graphenic platelet

Motivated by the problem of H(2) formation in diffuse clouds of the interstellar medium (ISM), we study the effect of including van der Waals-type corrections in DFT calculations on the entrance PES of the Eley-Rideal reaction H(b) + H(a)-GR → H(b)-H(a) + GR for a graphenic surface GR. The present calculations make use of the PBE-D3 dispersion corrected functional of Grimme et al. (2010) and are carried out on cluster models of graphenic surfaces: C(24)H(12) and C(54)H(18). To assess the soundness of the chosen functional we start by revisiting the H-GR adsorption potential. We find a satisfactory on top physisorption well (43-48 meV) correctly located at an H-GR distance of 3 ?. We then revisit the H(b)-H(a)-GR system using both the PW91 and PBE functionals. Our calculations do not reproduce the tiny potential barrier reported earlier for large H(b)distances from the surface. The barrier in the calculations of Sidis et al. (2000) and Morisset et al. (2003, 2004) has been traced to their previous use of an LSDA + POSTSCF PW91 procedure rather than the genuine PW91 one. The new PBE-D3 PES for the H(b)-H(a)-GR system is reported as a function of the H(b) distance to the surface and its impact parameter relative to the H(a) chemisorbate for the so-called "fixed puckered" ("diabatic" or "sudden") approach. The results are discussed in relation to recent experimental and theoretical work.     

Density functional study of H2 molecule and H atom adsorption on α‐U(001) surface

Density functional theory method has been employed to investigate the adsorption of H₂ molecule and H atom on α‐U(001) surface. There exist four initial sites [top (A), triangle‐center (B), long‐bridge (C), and short‐bridge (D)] for H₂ and H atom adsorptions on α‐U(001) surface. The E_ads (adsorption energy) values on the top sites of H₂‐U(001) configurations are around ?0.666 eV, and H₂ molecule has been elongated but not broken into H atoms. For the other three sites, the E_ads values are around ?1.521 eV. The long‐bridge site is the most reactive site for H₂ decomposing. For the H‐U(001) configurations, the E_ads are around ?2.904 eV. Top site and short‐bridge site are the most reactive sites for the H atom react on the α‐U(001) surface. Our work reveals that the different reactive sites play discrepant effects on hydrogenation process. Geometric deformations, diffusion paths, and partial density of states of H₂‐U(001) and H‐U(001) configurations have also been analyzed. Copyright © 2016 John Wiley & Sons, Ltd.     

H atom—rare gas interaction potentials from an electron gas model

A recently proposed electron gas model is applied to calculate the interaction potentials for HRg (Rg  He, Ne, Ar, Kr). In each case the results are in satisfactory with available experimental values.     

Hot hydrogen atom reactions moderated by H2 and He

Photolysis experiments were performed on the H2-CD4-NH3 and the He-CD4-NH3 systems. The photolysis (1849 angstoms) involved only NH3. Mixtures of H2:CD4:NH3 included all combinations of the ratios (200,400,800):(10,20,40):4. Two He:CD4:NH3 mixtures were examined where the ratios equalled the combinations 100:(10,20):4. Abstraction of a D from CD4 by the photolytically produced hot hydrogen from ammonia was monitored by mass spectrometric determination of HD. Both experiment and semiempirical hot-atom theory show that H2 is a very poor thermalizer of hot hydrogens with excess kinetic energy of about 2 eV. Applications of the hard-sphere collision model to the H2-CD4-NH3 system results in predicted ratios of net HD production to NH3 decomposition that were two orders of magnitude smaller than the experimental ratios. On the other hand, helium is found to be a very efficient thermalizer; here, the classical model yields reasonable agreement with experiments. Application of a semiempirical hot-atom program gave quantitative agreement with experiment for either system.     

Exciton migration dynamics in a dendritic molecule: quantum master equation approach using ab initio molecular orbital configuration interaction method

We investigate the exciton migration dynamics in a dendritic molecular model composed of pi-conjugation linear-leg units (acetylenes and diacetylene) and a benzene ring (branching point) using the quantum master equation approach with the ab initio molecular orbital (MO) configuration interaction (CI) method. The efficient migration of exciton from short-length linear legs (acetylenes) to long-length linear leg (diacetylene) via a benzene ring is observed. As predicted in previous studies, the exciton (electron and hole) distributions are relatively well localized in each generation segmented by the meta-branching point (meta-substituted benzene ring) though the electron and hole distributions are delocalized and are somewhat spatially different from each other within each generation. It is found that the excitons localized in the generation composed of short linear legs occupy in higher-lying exciton states, while those in the generation composed of long linear legs do in lower-lying ones. These features suggest the decoupling of pi-conjugation at the meta-branching point. On the other hand, the relaxation effect between exciton states is found to be caused by the exciton-phonon coupling, in which the existence of common configurations (electron-hole pairs) in CI wave functions between adjacent exciton states (having primary distributions on short and long linear-leg regions, respectively) is important for the relaxation between their exciton states. This feature indicates the importance of partial penetration of pi-conjugation through the meta-substituted benzene ring in excited states for such exciton migration.     

Mechanism of phototransfer of hydrogen atom in the model H2CO + H2O system

A system modelling the photochemical abstraction of a hydrogen atom by ketones in alcohols is calculated by the semiempirical INDO and MINDO/3 methods with allowance for the configuration interaction in the singly and doubly excited states. The states participating in the elimination reaction and the electronic rearrangement taking place in the course of the reaction are traced on the basis of an analysis of the wave functions and the electron and spin densities. It is established that the state of the ketone which participates in hydrogen abstraction is a lowest triplet state of the n^* type, which is formed through the avoidance of intersections of several states of different orbital type ^3*, ³n^* and the charge-transfer state.Translated from Teoreticheskaya i Éksperimental'naya Khimiya, Vol. 25, No. 4, pp. 476–480, July–August, 1989.     

Configuration interaction study of H2 and H3 systems

The configuration interaction method has been applied to the H₂ and H₃ systems. The effect of increasing the size of the atomic Slater-type orbital basis has been studied. A minimization procedure with respect to orbital exponents has been carried out.