Two new polymorphs of 2,6‐diaminopyrimidin‐4(3H)‐one monohydrate

The title compound, C₄H₆N₄O·H₂O, crystallized simultaneously as a triclinic and a monoclinic polymorph from an aqueous solution of 2,4‐diaminopyrimidin‐6‐ol. Previously, an orthorhombic polymorph was isolated under the same experimental conditions. The molecular geometric parameters in the two present polymorphs and the previously reported orthorhombic polymorph are similar, but the structures differ in the details of their crystal packing. In the triclinic system, the diaminopyrimidinone molecules are connected to one another via N—H...O and N—H...N hydrogen bonding to form infinite chains in the [011] direction. The chains are further hydrogen bonded to the water molecules, resulting in a three‐dimensional network. In the monoclinic system, the diaminopyrimidinone molecules are hydrogen bonded together into two‐dimensional networks parallel to the bc plane. The water molecules link the planes to form a three‐dimensional polymeric structure.     

Polymorphism in 3‐acetyl‐4‐hydroxy‐2H‐chromen‐2‐one

A new polymorph (denoted polymorph II) of 3‐acetyl‐4‐hydroxy‐2H‐chromen‐2‐one, C₁₁H₈O₄, was obtained unexpectedly during an attempt to recrystallize the compound from salt–melted ice, and the structure is compared with that of the original polymorph (denoted polymorph I) [Lyssenko & Antipin (2001). Russ. Chem. Bull. 50 , 418–431]. Strong intramolecular O—H...O hydrogen bonds are observed equally in the two polymorphs [O...O = 2.4263 (13) Å in polymorph II and 2.442 (1) Å in polymorph I], with a slight delocalization of the hydroxy H atom towards the ketonic O atom in polymorph II [H...O = 1.32 (2) Å in polymorph II and 1.45 (3) Å in polymorph I]. In both crystal structures, the packing of the molecules is dominated and stabilized by weak intermolecular C—H...O hydrogen bonds. Additional π–π stacking interactions between the keto–enol hydrogen‐bonded rings stabilize polymorph I [the centres are separated by 3.28 (1) Å], while polymorph II is stabilized by interactions between α‐pyrone rings, which are parallel to one another and separated by 3.670 (5) Å.     

Zoledronic acid: monoclinic and triclinic polymorphs from powder diffraction data

The crystal structures of the monoclinic and triclinic polymorphs of zoledronic acid, C₅H₁₀N₂O₇P₂, have been established from laboratory powder X‐ray diffraction data. The molecules in both polymorphs are described as zwitterions, namely 1‐(2‐hydroxy‐2‐phosphonato‐2‐phosphonoethyl)‐1H‐imidazol‐3‐ium. Strong intermolecular hydrogen bonds (with donor–acceptor distances of 2.60 Å or less) link the molecules into layers, parallel to the (100) plane in the monoclinic polymorph and to the (10) plane in the triclinic polymorph. The phosphonic acid groups form the inner side of each layer, while the imidazolium groups lie to the outside of the layer, protruding in opposite directions. In both polymorphs, layers related by translation along [100] interact through weak hydrogen bonds (with donor–acceptor distances greater than 2.70 Å), forming three‐dimensional layered structures. In the monoclinic polymorph, there are hydrogen‐bonded centrosymmetric dimers linked by four strong O—H...O hydrogen bonds, which are not present in the triclinic polymorph.     

Polymorphs of anhydrous theophylline: stable form IV consists of dimer pairs and metastable form I consists of hydrogen‐bonded chains

The structure of a previously unreported polymorph of anhydrous theophylline (1,3‐dimethyl‐3,7‐dihydro‐1H‐purine‐2,6‐dione), C₇H₈N₄O₂, has been determined at 100 K and shown to have monoclinic symmetry with Z′ = 2. The structure is named form IV and experimental observation indicates that this is the stable form of the material. The molecular packing consists of discrete hydrogen‐bonded dimers similar to that observed in the monohydrate structure. The structure of form I has also been determined and consists of hydrogen‐bonded chains.     

Time‐dependent density functional theory study on the electronic excited‐state geometric structure,infrared spectra,and hydrogen bonding of a doubly hydrogen‐bonded complex

The geometric structures and infrared (IR) spectra in the electronically excited state of a novel doubly hydrogen‐bonded complex formed by fluorenone and alcohols, which has been observed by IR spectra in experimental study, are investigated by the time‐dependent density functional theory (TDDFT) method. The geometric structures and IR spectra in both ground state and the S₁ state of this doubly hydrogen‐bonded FN‐2MeOH complex are calculated using the DFT and TDDFT methods, respectively. Two intermolecular hydrogen bonds are formed between FN and methanol molecules in the doubly hydrogen‐bonded FN‐2MeOH complex. Moreover, the formation of the second intermolecular hydrogen bond can make the first intermolecular hydrogen bond become slightly weak. Furthermore, it is confirmed that the spectral shoulder at around 1700 cm^?1 observed in the IR spectra should be assigned as the doubly hydrogen‐bonded FN‐2MeOH complex from our calculated results. The electronic excited‐state hydrogen bonding dynamics is also studied by monitoring some vibraitonal modes related to the formation of hydrogen bonds in different electronic states. As a result, both the two intermolecular hydrogen bonds are significantly strengthened in the S₁ state of the doubly hydrogen‐bonded FN‐2MeOH complex. The hydrogen bond strengthening in the electronically excited state is similar to the previous study on the singly hydrogen‐bonded FN‐MeOH complex and play important role on the photophysics of fluorenone in solutions. © 2009 Wiley Periodicals, Inc. J Comput Chem 2009     

A novel crystal form of metacetamol: the first example of a hydrated form

We report the crystal structure and crystallization conditions of a first hydrated form of metacetamol (a hemihydrate), C₈H₉NO₂·0.5H₂O. It crystallizes from metacetamol‐saturated 1:1 (v/v) water–ethanol solutions in a monoclinic structure (space group P2₁/n) and contains eight metacetamol and four water molecules per unit cell. The conformations of the molecules are the same as in polymorph II of metacetamol, which ensures the formation of hydrogen‐bonded dimers and R₂²(16) ring motifs in its crystal structure similar to those in polymorph II. Unlike in form II, however, these dimers in the hemihydrate are connected through water molecules into infinite hydrogen‐bonded molecular chains. Different chains are linked to each other by metacetamol–water and metacetamol–metacetamol hydrogen bonds, the latter type being also present in polymorph I. The overall noncovalent network of the hemihydrate is well developed and several types of hydrogen bonds are responsible for its formation.     

Violuric acid monohydrate: a second polymorph with more extensive hydrogen bonding

Crystals of a second polymorph of violuric acid monohydrate [systematic name: pyrimidine‐2,4,5,6(1H,3H)‐tetrone monohydrate], C₄H₃N₃O₄·H₂O, have higher density and a more extensive hydrogen‐bonding arrangement than the previously reported polymorph. Violuric acid and water molecules form essentially planar hydrogen‐bonded sheets, which are stacked in an offset …ABCABC… repeat pattern involving no ring‐stacking interactions.     

A new polymorph of bis(2‐aminopyridinium) fumarate–fumaric acid (1/1) from powder X‐ray diffraction

A new polymorph of bis(2‐aminopyridinium) fumarate–fumaric acid (1/1), 2C₅H₇N₂⁺·C₄H₂O₄²⁻·C₄H₄O₄, was obtained and its crystal structure determined by powder X‐ray diffraction. The new polymorph (form II) crystallizes in the triclinic system (space group P), while the previous reported polymorph [form I; Ballabh, Trivedi, Dastidar & Suresh (2002). CrystEngComm, 4 , 135–142; Büyükgüngör, Odabaşoğlu, Albayrak & Lönnecke (2004). Acta Cryst. C 60 , o470–o472] is monoclinic (space group P2₁/c). In both forms I and II, the asymmetric unit consists of one 2‐aminopyridinium cation, half a fumaric acid molecule and half a fumarate dianion. The fumarate dianion is involved in hydrogen bonding with two neighbouring 2‐aminopyridinium cations to form a hydrogen‐bonded trimer in both forms. In form II, the hydrogen‐bonded trimers are interlinked across centres of inversion via pairs of N—H...O hydrogen bonds, whereas such trimers are joined via single N—H...O hydrogen bonds in form I, leading to different packing modes for forms I and II. The results demonstrate the relevance and application of the powder diffraction method in the study of polymorphism of organic molecular materials.     

Mismatch base pairing of the mutagen 8‐oxoguanine and its derivatives with adenine: A theoretical search for possible antimutagenic agents

Molecular geometries of 8‐oxoguanine (8OG), those of its substituted derivatives with the substitutions CH₂, CF₂, CO, CNH, O, and S in place of the N7H7 group, adenine (A), and the base pairs of 8OG and its substituted derivatives with adenine were optimized using the RHF/6‐31+G* and B3LYP/6‐31+G* methods in gas phase. All the molecules and their hydrogen‐bonded complexes were solvated in aqueous media employing the polarized continuum model (PCM) of the self‐consistent reaction field (SCRF) theory using the RHF/6‐31+G* and B3LYP/6‐31+G* methods. The optimized geometrical parameters of the 8OG‐A base pair at the RHF/6‐31+G* and B3LYP/6‐31+G* levels of theory agree satisfactorily with those of an oligonucleotide containing the base pair found from X‐ray crystallography. The pattern of hydrogen bonding in the CF₂‐ and O‐substituted 8OG‐A base pair is of Watson–Crick type and that in the unsubstituted and CH₂‐, CNH‐, and S‐substituted base pairs is of Hoogsteen type. In the CO‐substituted base pair, the hydrogen bonding pattern is of neither Watson–Crick nor Hoogsteen type. The CF₂‐substitution appears to introduce steric hindrance for stacking of DNA bases. On the basis of these results, it appears that among all the substituted 8OG molecules considered here, the O‐substituted derivative may be useful as an antimutagenic drug. It is, however, subject to experimental verification. © 2004 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

A new polymorph of physcion

The structure of the title compound, 7‐methoxy‐2‐methyl‐4,5‐dihydroxyanthracene‐9,10‐dione, C₁₆H₁₂O₅, was originally reported by Ulickýet al. [Acta Cryst. (1991). C 47 , 1879–1881] in the space group P2₁2₁2₁ [polymorph (Io)]. The new polymorph, (Im), crystallizes in the space group P2₁/c. The molecular structures are closely similar, with both –OH groups forming intramolecular hydrogen bonds to one of the neighbouring quinone O atoms, thus slightly lengthening this C=O bond; the pattern of C—C bond lengths in the ring system is consistent with some contribution from a resonance form with a negative charge at the hydrogen‐bonded quinone O atom and an aromatic region around its neighbouring C atoms. The packing of (Im) is simpler than the extensively crosslinked pattern of (Io), with molecular tapes connected by classical (but three‐centre) and `weak' hydrogen bonds, parallel to [20].     

A new polymorph of a cobalt(III) Schiff base complex exhibits a one‐dimensional C—H⋯O hydrogen‐bonded extended structure with helical 21 symmetry

In a new polymorph of acetato(2,2′‐{imino­bis[(E)‐propane‐3,1‐diylnitrilo­methyl­idyne]}diphenol­ato)­cobalt(III), [Co(C₂₀H₂₃N₃O₂)(C₂H₃O₂)], in the space group P2₁/c, the Co^III ion is six‐coordinate, with unequal Co—O_phenolate distances that average 1.908 (12) Å and more similar Co—N_imine distances averaging 1.937 (4) Å. The acetate ion occupies the sixth coordination site and forms an intra­molecular hydrogen bond (H⋯O = 1.95 Å) with the Co‐bound NH group of the penta­dentate chelate. The extended structure is a one‐dimensional (aryl)C—H⋯O(carbonyl) hydrogen‐bonded polymer with 2₁ (helical) symmetry and is thus distinct from the simple hydrogen‐bonded stack of the P2₁/n polymorph [Matsumoto, Imaizumi & Ohyoshi (1983). Polyhedron, 2 , 137–139].     

Two polymorphs and the diethylammonium salt of the barbiturate eldoral

Polymorph (Ia) of eldoral [5‐ethyl‐5‐(piperidin‐1‐yl)barbituric acid or 5‐ethyl‐5‐(piperidin‐1‐yl)‐1,3‐diazinane‐2,4,6‐trione], C₁₁H₁₇N₃O₃, displays a hydrogen‐bonded layer structure parallel to (100). The piperidine N atom and the barbiturate carbonyl group in the 2‐position are utilized in N—H...N and N—H...O=C hydrogen bonds, respectively. The structure of polymorph (Ib) contains pseudosymmetry elements. The two independent molecules of (Ib) are connected via N—H...O=C(4/6‐position) and N—H...N(piperidine) hydrogen bonds to give a chain structure in the [100] direction. The hydrogen‐bonded layers, parallel to (010), formed in the salt diethylammonium 5‐ethyl‐5‐(piperidin‐1‐yl)barbiturate [or diethylammonium 5‐ethyl‐2,4,6‐trioxo‐5‐(piperidin‐1‐yl)‐1,3‐diazinan‐1‐ide], C₄H₁₂N⁺·C₁₁H₁₆N₃O₃⁻, (II), closely resemble the corresponding hydrogen‐bonded structure in polymorph (Ia). Like many other 5,5‐disubstituted derivatives of barbituric acid, polymorphs (Ia) and (Ib) contain the R₂²(8) N—H...O=C hydrogen‐bond motif. However, the overall hydrogen‐bonded chain and layer structures of (Ia) and (Ib) are unique because of the involvement of the hydrogen‐bond acceptor function in the piperidine group.     

A new polymorph and two pseudopolymorphs of pyrimethamine

Due to its donor–acceptor–donor site, the antimalarial drug pyrimethamine [systematic name: 5‐(4‐chlorophenyl)‐6‐ethylpyrimidine‐2,4‐diamine] is a potential component of a supramolecular synthon. During a cocrystallization screen, one new polymorph of solvent‐free pyrimethamine, C₁₂H₁₃ClN₄, (I), and two pseudopolymorphs, pyrimethamine dimethyl sulfoxide monosolvate, C₁₂H₁₃ClN₄·C₂H₆OS, (Ia), and pyrimethamine N‐methylpyrrolidin‐2‐one monosolvate, C₁₂H₁₃ClN₄·C₅H₉NO, (Ib), were obtained. In (I), (Ia), (Ib) and the previously reported polymorph, the pyrimethamine molecules exhibit similar conformations and form R²₂(8) dimers stabilized by a pair of N—H...N hydrogen bonds. However, the packing arrangements are completely different. In (I), the dimers are connected by two additional N—H...N hydrogen bonds to form ribbons and further connected into a two‐dimensional network parallel to (100), while layers containing N—H...Cl hydrogen‐bonded pyrimethamine ribbons are observed in the packing of the known polymorph. In the two pseudopolymorphs, two pyrimethamine molecules are linked to form R²₂(8) dimers and the solvent molecules are connected to the dimers by R²₃(8) interactions involving two N—H...O hydrogen bonds. These arrangements are connected to form zigzag chains by N—H...Cl interactions in (Ia) and to form ribbons by N—H...N interactions in (Ib). Unexpectedly, a reaction between pyrimethamine and N‐methylpyrrolidin‐2‐one occurred during another cocrystallization experiment from a solvent mixture of N‐methylpyrrolidin‐2‐one and dimethyl sulfoxide, yielding solvent‐free 5,5′‐{[5‐(4‐chlorophenyl)‐6‐ethylpyrimidine‐2,4‐diyl]bis(azanediyl)}bis(1‐methylpyrrolidin‐2‐one), C₂₂H₂₇ClN₆O₂, (II). In the packing of (II), the pyrimethamine derivatives are N—H...O hydrogen bonded to form ribbons. A database study was carried out to compare the molecular conformations and hydrogen‐bonding interactions of pyrimethamine.     

Time‐dependent density functional theory study on the electronic excited‐state hydrogen‐bonding dynamics of 4‐aminophthalimide (4AP) in aqueous solution: 4AP and 4AP–(H2O)1,2 clusters

The time‐dependent density functional theory (TDDFT) method has been carried out to investigate the excited‐state hydrogen‐bonding dynamics of 4‐aminophthalimide (4AP) in hydrogen‐donating water solvent. The infrared spectra of the hydrogen‐bonded solute?solvent complexes in electronically excited state have been calculated using the TDDFT method. We have demonstrated that the intermolecular hydrogen bond C? O···H? O and N? H···O? H in the hydrogen‐bonded 4AP?(H₂O)₂ trimer are significantly strengthened in the electronically excited state by theoretically monitoring the changes of the bond lengths of hydrogen bonds and hydrogen‐bonding groups in different electronic states. The hydrogen bonds strengthening in the electronically excited state are confirmed because the calculated stretching vibrational modes of the hydrogen bonding C?O, amino N? H, and H? O groups are markedly red‐shifted upon photoexcitation. The calculated results are consistent with the mechanism of the hydrogen bond strengthening in the electronically excited state, while contrast with mechanism of hydrogen bond cleavage. Furthermore, we believe that the transient hydrogen bond strengthening behavior in electroniclly excited state of chromophores in hydrogen‐donating solvents exists in many other systems in solution. © 2010 Wiley Periodicals, Inc. J Comput Chem, 2010     

1‐(4‐Bromo­phenyl)‐3‐(4‐methyl­phenyl)­prop‐2‐en‐1‐one

In the mol­ecule of the title compound, C₁₆H₁₃BrO, the two benzene rings are rotated in opposite directions with respect to the central C—C=C—C part of the mol­ecule. The phenone O atom deviates from the least‐squares plane of the mol­ecule by 0.300 (3) Å. In the crystal structure, mol­ecules are paired through C—H⋯π interactions. The molecular pairs along [001] are hydrogen bonded through three translation‐related co‐operative hydrogen bonds in the `bay area', forming molecular chains, which are further hydrogen bonded through C—H⋯Br weak interactions, forming (010) molecular layers. In the third direction, there are only weak van der Waals interactions. The co‐operative hydrogen bonds in the `bay area' are discussed briefly.     

δ‐Sulfanilamide

The δ polymorph of sulfanilamide (or 4‐aminobenzenesulfonamide), C₆H₈N₂O₂S, displays an overall three‐dimensional hydrogen‐bonded network that is dominated by a two‐dimensional substructure with R²₂(8) rings; these result from dimeric N—H...O interactions between adjacent sulfonamide groups. This study shows how the polymorphism of sulfanilamide is linked to its versatile hydrogen‐bonding capabilities.     

Excited‐State Hydrogen Bonding Strengthening and Weakening with Intramolecular Charge Transfer in Resorufin‐Water Complexes: A TD‐DFT Study

The geometric structures, infrared spectra and hydrogen bond binding energies of the various hydrogen‐bonded Res^?‐water complexes in states S0 and S1 have been calculated using the density functional theory (DFT) and time‐dependent density functional theory (TD‐DFT) methods, respectively. Based on the changes of the hydrogen bond lengths and binding energies as well as the spectral shifts of the vibrational mode of the hydroxyl groups, it is demonstrated that hydrogen bonds HB‐II, HB‐III and HB‐IV are strengthened while hydrogen bond HB‐I is weakened in the four singly hydrogen‐bonded Res^?‐Water complexes upon photoexcitation. When the four hydrogen bonds are formed simultaneously between one resorufin anion and four water molecules in the Res^?‐4Water complex, all the hydrogen bonds are weakened in both the ground and excited states compared with those in the corresponding singly hydrogen‐bonded Res^?‐Water complexes. Furthermore, in complex Res^?‐4Water, hydrogen bonds HB‐II and HB‐IV are strengthened while hydrogen bonds HB‐I and HB‐III are weakened after the electronic excitation. The hydrogen bond strengthening and weakening in the various hydrogen‐bonded Res^?‐water complexes should be due to the redistribution of the charges among the four heteroatoms (O_1‐3 and N₁) within the resorufin molecule upon the optical excitation.     

The structural properties of a noncentrosymmetric polymorph of 4‐aminobenzoic acid

The crystal structure of a polymorph of 4‐aminobenzoic acid (PABA), C₇H₇NO₂, at 100 K is noncentrosymmetric, as opposed to centrosymmetric in the structures of the other known polymorphs. The two crystallographically independent PABA molecules form pseudocentrosymmetric O—H...O hydrogen‐bonded dimers that are further linked by N—H...O hydrogen bonds into a three‐dimensional network. The benzene rings stack in the b direction. The CO₂ moieties are bent out slightly from the benzene ring plane.     

Conformational polymorphism of (E,E)‐N,N′‐bis(4‐nitrobenzylidene)benzene‐1,4‐diamine

Two polymorphs of (E,E)‐N,N′‐bis(4‐nitrobenzylidene)benzene‐1,4‐diamine, C₂₀H₁₄N₄O₄, (I), have been identified. In each case, the molecule lies across a crystallographic inversion centre. The supramolecular structure of the first polymorph, (I‐1), features stacking based on π–π interactions assisted by weak hydrogen bonds involving the nitro groups. The second polymorph, (I‐2), displays a perpendicular arrangement of molecules linked via the nitro groups, combined with weak C—H...O hydrogen bonds. Both crystal structures are compared with that of the carbon analogue (E,E)‐1,4‐bis[2‐(4‐nitrophenyl)ethenyl]benzene, (II).     

A new polymorph of triphenylmethylamine: the effect of hydrogen bonding

Crystallization of the hexane reaction mixture after treatment of LiGe(OCH₂CH₂NMe₂)₃ with Ph₃CN₃ gives rise to a new triclinic (space group P) polymorph of triphenylmethylamine, C₁₉H₁₇N, (I), containing dimers formed by N—H...N hydrogen bonds, whereas the structure of the known orthorhombic (space group P2₁2₁2₁) polymorph of this compound, (II), consists of isolated molecules. While the dimers in (I) lie across crystallographic inversion centres, the molecules are not truly related by them. The centrosymmetric structure is due to the statistical disordering of the amino H atoms participating in the N—H...N hydrogen‐bonding interactions, and thus the inversion centre is superpositional. The conformations and geometric parameters of the molecules in (I) and (II) are very similar. It was found that the polarity of the solvent does not affect the capability of triphenylmethylamine to crystallize in the different polymorphic modifications. The orthorhombic polymorph, (II), is more thermodynamically stable under normal conditions than the triclinic polymorph, (I). The experimental data indicate the absence of a phase transition in the temperature interval 120–293 K. The densities of (I) (1.235 Mg m⁻³) and (II) (1.231 Mg m⁻³) at 120 K are practically equal. It would seem that either the kinetic factors or the effects of the other products of the reaction facilitating the hydrogen‐bonded dimerization of triphenylmethylamine molecules are the determining factor for the isolation of the triclinic polymorph (I) of triphenylmethylamine.