Theoretical Study of α‐V2O5‐Based Double‐Wall Nanotubes

First‐principles calculations of the atomic and electronic structure of double‐wall nanotubes (DWNTs) of α‐V₂O₅ are performed. Relaxation of the DWNT structure leads to the formation of two types of local regions: 1) bulk‐type regions and 2) puckering regions. Calculated total density of states (DOS) of DWNTs considerably differ from that of single‐wall nanotubes and the single layer, as well as from the DOS of the bulk and double layer. Small shoulders that appear on edges of valence and conduction bands result in a considerable decrease in the band gaps of the DWNTs (up to 1 eV relative to the single‐layer gaps). The main reason for this effect is the shift of the inner‐ and outer‐wall DOS in opposite directions on the energetic scale. The electron density corresponding to shoulders at the conduction‐band edges is localized on vanadium atoms of the bulk‐type regions, whereas the electron density corresponding to shoulders at the valence‐band edges belongs to oxygen atoms of both regions.     

Structural Changes in 2‐Diarylthiophene‐Substituted Starburst Compounds upon Charging: A Theoretical and Spectroelectrochemical Study

The role of charging in structural changes of 2‐diarylaminothiophene‐substituted starburst compounds is clarified by combining theoretical and spectroelectrochemical studies. A systematic and comparative theoretical calculation based on density functional theory and semiempirical Austin Model 1 (AM1) calculations is performed on the neutral and charged states of four model tris(5‐diarylamino‐5‐thienyl)‐terminated starburst compounds with a central triphenylamine and 1,3,5‐triphenylbenzene moiety. Our results indicate that the charging of molecules leads to structural changes by quinoid‐type components mostly on the dendrimers terminated by phenothiazinyl fragments. Based on the optimal geometries, the spectroscopic properties were calculated using the semiempirical Zerner’s intermediate neglect overlap method. The presented theoretical results and the spin electron distributions of charged states and their spectra are supported by the spectroelectrochemical observations caused by the different electron localization within the studied molecules after charging. The satisfactory agreement between theoretical electronic transitions and experimental values indicates that a rational design of tunable molecular layers in organic devices based on the starburst compounds described is possible.     

A New Approach to the Design of Neutral 10‐C‐5 Trigonal‐Bipyramidal Carbon Compounds: A “π‐Electron Cap” Effect

DFT (B3LYP, M06‐2X) and MP2 methods are applied to the design of a wide series of the potentially 10‐C‐5 neutral compounds based on 6‐azabicyclotetradecanes: XC¹(YCH₂CH₂CH₂)₃N 1 – 3 , XC¹(YC₆H₄CH₂)₃N 4 – 6 , XC¹[Y(tBuC₆H₃)CH₂]₃N 7 – 9 and carbatranophanes 10 – 25 (X=Me, F, Cl; Y=O, NH, CH₂, SiH₂; Z=O, CH₂, (CH₂)₂, (CH₂)₃). Carbatranophanes 10 – 25 are characterized by a sterical compression of their axial 3c–4e XC¹←N fragment with respect to that in the parent molecules 4 – 6 . A magnitude of the revealed effect depends on a valence surrounding of the central carbon atom C¹, the size and the nature of the side chains (Z) that link the “π‐electron cap” with a tetradecane backbone. This circumstance allowed us to obtain 10‐C‐5 structures with the configuration of the bonds around the C¹ atom, which corresponds to practically an ideal trigonal bipyramid. In these compounds, the values of the covalence ratio χ of approximately 0.6 for the coordination C¹←N contacts with a covalent contribution (atoms in molecules (AIM) and natural bond orbital (NBO)) are record in magnitude. These values lie close to a low limit of the interval of the χ_Si←D change (0.6–0.9) being characteristic of the dative and ionic‐covalent (by nature) Si←D bond (D=N, O) in the known 10‐Si‐5 silicon compounds.     

The Equally Important Role of Adenine Derivatives to That of Pyrimidine Derivatives in Near‐0 eV Electron‐Induced DNA Lesions

The role of adenine (A) derivatives in DNA damage is scarcely studied due to the low electron affinity of base A. Experimental studies demonstrate that low‐energy electron (LEE) attachment to adenine derivatives complexed with amino acids induces barrier‐free proton transfer producing the neutral N₇‐hydrogenated adenine radicals rather than conventional anionic species. To explore possible DNA lesions at the A sites under physiological conditions, probable bond ruptures in two models—N₇‐hydrogenated 2′‐deoxyadenosine‐3′‐monophosphate (3′‐dA(N7H)MPH) and 2′‐deoxyadenosine‐5′‐monophosphate (5′‐dA(N7H)MPH), without and with LEE attachment—are studied by DFT. In the neutral cases, DNA backbone breakage and base release resulting from C_3′?O_3′ and N₉?C_1′ bond ruptures, respectively, by an intramolecular hydrogen‐transfer mechanism are impossible due to the ultrahigh activation energies. On LEE attachment, the respective C_3′?O_3′ and N₉?C_1′ bond ruptures in [3′‐dA(N7H)MPH]^? and [5′‐dA(N7H)MPH]^? anions via a pathway of intramolecular proton transfer (PT) from the C_2′ site of 2′‐deoxyribose to the C₈ atom of the base moiety become effective, and this indicates that substantial DNA backbone breaks and base release can occur at non‐3′‐end A sites and the 3′‐end A site of a single‐stranded DNA in the physiological environment, respectively. In particular, compared to the results of previous theoretical studies, not only are the electron affinities of 3′‐dA(N7H)MPH and 5′‐dA(N7H)MPH comparable to those of hydrogenated pyrimidine derivatives, but also the lowest energy requirements for the C_3′?O_3′ and N₉‐glycosidic bond ruptures in [3′‐dA(N7H)MPH]^? and [5′‐dA(N7H)MPH]^? anions, respectively, are comparable to those for the C_3′?O_3′ and N₁‐glycosidic bond cleavages in corresponding anionic hydrogenated pyrimidine derivatives. Thus, it can be concluded that the role of adenine derivatives in single‐stranded DNA damage is equally important to that of pyrimidine derivatives in an irradiated cellular environment.     

Diastereoselective Access to Polyoxygenated Polycyclic Spirolactones through a Rhodium‐Catalyzed [3+2] Cycloaddition Reaction: Experimental and Theoretical Studies

The synthetic utility of γ‐alkylidenebutenolides is demonstrated as highly competent dipolarophile partners in both intra‐ and intermolecular rhodium(II)‐catalyzed 1,3‐dipolar cycloaddition reactions. The strength of this approach lies in the formation of spiro[6,4]lactone moieties with the concomitant construction of quaternary spiro stereocenters. Typically, the construction of spirolactones involves an esterification step, which has often been reported as a “biosynthetic pathway”, and often occurs either as or near to the final step of a total synthesis. Furthermore, a convergent and versatile route is reported for the formation of the (5,7) skeleton of molecules that were isolated from the Schisandra genus. Computational studies were performed to provide an overall picture of the mechanism of the intermolecular [3+2] cycloaddition between 2‐diazo‐1,3‐ketoester and protoanemonin and to rationalize the empirical observations. In particular, we have demonstrated for the first time that the rhodium center plays an important role during the cyclization step itself and reacts with the dipolarophile as a complex with the ylide.     

A Computational Study on 3‐Azonia‐, 3‐Phosphonia‐, and 3‐Arsoniaspiro[2.2]pentanes and Related Three‐Membered Heterocycles

A theoretical study at the ab initio MP2/6‐311++G(d,p) level of theory is carried out to characterize several heterocyclic spiro[2.2]pentane cations with N, P, and As as spiro atoms. The strain and relative stability of the spiropentanes are obtained through isodesmic reactions. Nucleus‐independent chemical shifts (NICS) and 3D NICS isosurfaces show σ‐aromatic characteristics, similar to those found in cyclopropane. The interaction with the Cl^? anion, which results in four different stationary structures, is studied and characterized by means of the atoms in molecules methodology, and Cl ??? pnicogen, Cl ??? H, and Cl ??? C interactions are found. The most stable structure in all cases corresponds to opening of one of the three‐membered rings, due to the attack of the Cl atom, and C?Cl bond formation. Furthermore, the reaction with the 3‐boranuidaspiro[2.2]pentane anion results in the formation of a new compound through cleavage of one ring of both reactants.     

Borane Derivatives: A New Class of Super‐ and Hyperhalogens

Super‐ and hyperhalogens are a class of highly electronegative species whose electron affinities far exceed those of halogen atoms and are important to the chemical industry as oxidizing agents, biocatalysts, and building blocks of salts. Using the well‐known Wade–Mingos rule for describing the stability of closo‐boranes B_nH_n^2? and state‐of‐the‐art theoretical methods, we show that a new class of super‐ and hyperhalogens, guided by this rule, can be formed by tailoring the size and composition of borane derivatives. Unlike conventional superhalogens, in which a central metal atom is surrounded by halogen atoms, the superhalogens formed according to the Wade–Mingos rule do not have to have either halogen or metal atoms. We demonstrate this by using B₁₂H₁₃ and its isoelectronic cluster CB₁₁H₁₂ as examples. We also show that while conventional superhalogens containing alkali atoms require at least two halogen atoms, a single borane‐like moiety is sufficient to give M(B₁₂H₁₂) clusters (M=Li, Na, K, Rb, Cs) superhalogen properties. In addition, hyperhalogens can be formed by using the above superhalogens as building blocks. Examples include M(B₁₂H₁₃)₂ and M(CB₁₁H₁₂)₂ (M=Li–Cs). This finding opens the door to an untapped source of superhalogens and weakly coordinating anions with potential applications.     

Gold(I)‐Catalyzed Dearomative [2+2]‐Cycloaddition of Indoles with Activated Allenes: A Combined Experimental–Computational Study

The gold‐catalyzed synthesis of methylidene 2,3‐cyclobutane‐indoles is documented through a combined experimental/computational investigation. Besides optimizing the racemic synthesis of the tricyclic indole compounds, the enantioselective variant is presented to its full extent. In particular, the scope of the reaction encompasses both aryloxyallenes and allenamides as electrophilic partners providing high yields and excellent stereochemical controls in the desired cycloadducts. The computational (DFT) investigation has fully elucidated the reaction mechanism providing clear evidence for a two‐step reaction. Two parallel reaction pathways explain the regioisomeric products obtained under kinetic and thermodynamic conditions. In both cases, the dearomative C?C bond‐forming event turned out to be the rate‐determining step.     

Gold‐Catalyzed Cyclization of Diynes: Controlling the Mode of 5‐endo versus 6‐endo Cyclization—An Experimental and Theoretical Study by Utilizing Diethynylthiophenes

Herein, a dual‐gold catalyzed cyclization of 3,4‐diethynylthiophenes generating pentaleno[c]thiophenes through gold–vinylidenes and C?H bond activation is disclosed. Various new heteroaromatic compounds—substrate classes unexplored to date—exhibiting three five‐membered annulated ring systems could be synthesized in moderate to high yields. By comparison of the solid‐state structures of the corresponding gold–acetylides, it could be demonstrated that the cyclization mode (5‐endo versus 6‐endo) is controlled by the electronic and not steric nature of the diyne backbone. Depending on different backbones, we calculated thermodynamic stabilities and full potential‐energy surfaces giving insight into the crucial dual‐activation cyclization step. In the case of the 3,4‐thiophene backbone, in which the initial cyclization is rate and selectivity determining, two energetically distinct transition states could be localized explaining the observed 5‐endo cyclization mode by classical transition‐state theory. In the case of vinyl and 2,3‐thiophene backbones, the theoretical analysis of the cyclization mode in the bifurcated cyclization area demonstrated that classical transition‐state theory is no longer valid to explain the high experimentally observed selectivity. Herein, for the first time, the influence of the backbone and the aromatic stabilization effect of the 6‐endo product in the crucial cyclization step could be visualized and quantified by calculating and comparing the full potential‐energy surfaces.     

Regioselectivity Control in the Metal‐Catalyzed Functionalization of γ‐Allenols,Part 2: Theoretical Study

Calculating cyclization : Theoretical work directed towards the elucidation of the mechanisms of the gold‐, palladium‐, and lanthanum‐catalyzed oxycyclizations (5‐exo versus 6‐endo versus 7‐endo) of γ‐allenols has been pursued in close relationship with the experimental study (Part 1, accompanying paper) and has corroborated the bench results to provide a complete study of the reactivity of γ‐allenols under different metal‐catalyzed conditions.

     

σ Aromaticity Dominates in the Unsaturated Three‐Membered Ring of Cyclopropametallapentalenes from Groups 7–9: A DFT Study

Aromaticity, an old but still fantastic topic, has long attracted considerable interest of chemists. Generally, π aromaticity is described by π‐electron delocalization in closed circuits of unsaturated compounds whereas σ‐electron delocalization in saturated rings leads to σ aromaticity. Interestingly, our recent study shows that σ aromaticity can be dominating in an unsaturated three‐membered ring (3MR) of cyclopropaosmapentalene. An interesting question is raised: Can the σ aromaticity, which is dominant in the unsaturated 3MR, be extended to other cyclopropametallapentalenes? If so, how could the metal centers, ligands, and substituents affect the σ aromaticity? Here, we report a thorough theoretical study on these issues. The nucleus‐independent chemical shift calculations and the anisotropy of the current‐induced density plots reveal the dominant σ aromaticity in these unsaturated 3MRs. In addition, our calculations show that substituents on the 3MRs have significant effects on the σ aromaticity, whereas the ligand effect is particularly small.     

Distinct Hydroxy‐Radical‐Induced Damage of 3′‐Uridine Monophosphate in RNA: A Theoretical Study

Cutting ties : Strand scission and base release in hydroxy‐radical adducts of 3′‐uridine monophosphate (UMP) have been explored by using density functional theory. The presence of the ribose 2′‐OH group and the resultant formation of low‐barrier hydrogen bonds with oxygen atoms of the 3′‐phosphate linkage are highly important for hydrogen transfer and the subsequent bond‐breakage reactions (see picture).

     

trans–cis Photoisomerization of Azobenzene‐Conjugated Dithiolato‐Bipyridine Platinum(II) Complexes: Extension of Photoresponse to Longer Wavelengths and Photocontrollable Tristability

Azobenzene derivatives modified with dithiolato‐bipyridine platinum(II) complexes were synthesized, revealing their highly extended photoresponses to the long wavelength region as well as unique photocontrollable tristability. The absorptions of trans‐ 1 and trans‐ 2 with one azobenzene group on the dithiolene and bipyridine ligands, respectively, cover the range from 300 to 700 nm. These absorptions are ascribed, by means of time‐dependent (TD)DFT calculations, to transitions from dithiolene(π) to bipyridine(π*), namely, interligand charge transfer (CT), π–π*, and n–π* transitions of the azobenzene unit, and π–π* transitions of the bipyridine ligand. In addition, only trans‐ 1 shows distinctive electronic bands, assignable to transitions from the dithiolene(π) to azobenzene(π*), defined as intraligand CT. Complex 1 shows photoisomerization behavior opposite to that of azobenzene: trans‐to‐cis and cis‐to‐trans conversions proceed with 405 and 312 nm irradiation, which correspond to excitation with the intraligand CT, and π–π* bands of the azobenzene and bipyridine units, respectively. In contrast, complex 2 shows photoisomerization similar to that of azobenzene: trans‐to‐cis and cis‐to‐trans transformations occur with 365 and 405 nm irradiation, respectively. Irradiation at 578 nm, corresponding to excitation of the interligand CT transitions, results in cis‐to‐trans conversion of both 1 and 2 , which is the longest wavelength ever reported to effect the photoisomerization of the azobenzene group. The absorption and photochromism of 4 , which has azobenzene groups on both the dithiolato and bipyridine ligands, have characteristics quite similar to those of 1 and 2 , which furnishes 4 with photocontrollable tristability in a single molecule using light at 365, 405, and 578 nm. We also clarified that 1 and 2 have high photoisomerization efficiencies, and good thermal stability of the cis forms. Complexes 3 and 5 have almost the identical photoresponse to those of their positional isomers, complexes 2 and 4 .     

Synthesis of Densely Functionalised 5‐Halogen‐1,3‐oxazin‐2‐ones by Halogen‐Mediated Regioselective Cyclisation of N‐Cbz‐Protected Propargylic Amines: A Combined Experimental and Theoretical Study

A very efficient synthesis of 5‐halogen‐1,3‐oxazin‐2‐ones has been accomplished by the halocyclisation reaction of chiral nonracemic N‐carbobenzyloxy (N‐Cbz)‐protected propargylic amines by using I₂, Br₂ and Cl₂ as electrophile sources. The nature of the halogen influences the reaction time and yield. However, in all cases the reaction is totally regioselective taking place through a 6‐endo‐dig process regardless of the nature of the halogen and of the substituents in the starting material. To rationalise the experimental results, theoretical studies at the B3LYP/6‐311G* level have been performed.     

Co‐Adsorption of O2 and CO on Au2−: Infrared Photodissociation Spectroscopy and Theoretical Study of [Au2O2(CO)n]− (n=2–6)

The co‐adsorption of O₂ and CO on anionic sites of gold species is considered as a crucial step in the catalytic CO oxidation on gold catalysts. In this regard, the [Au₂O₂(CO)_n]^? (n=2–6) complexes were prepared by using a laser vaporization supersonic ion source and were studied by using infrared photodissociation spectroscopy in the gas phase. All the [Au₂O₂(CO)_n]^? (n=2–6) complexes were characterized to have a core structure involving one CO and one O₂ molecule co‐adsorbed on Au₂^? with the other CO molecules physically tagged around. The CO stretching frequency of the [Au₂O₂(CO)]^? core ion is observed around =2032–2042 cm^?1, which is about 200 cm^?1 higher than that in [Au₂(CO)₂]^?. This frequency difference and the analyses based on density functional calculations provide direct evidence for the synergy effect of the chemically adsorbed O₂ and CO. The low lying structures with carbonate group were not observed experimentally because of high formation barriers. The structures and the stability (i.e., the inertness in a sense) of the co‐adsorbed O₂ and CO on Au₂^? may have relevance to the elementary reaction steps on real gold catalysts.     

Theoretical Study of Pd11Si6 Nanosheet Compounds Including Seven‐Coordinated Si Species and Its Ge Analogues

Nanosheet compounds Pd₁₁(SiiPr)₂(SiiPr₂)₄(CNtBu)₁₀ ( 1 ) and Pd₁₁(SiiPr)₂(SiiPr₂)₄(CNMes)₁₀ ( 2 ), containing two Pd₇(SiiPr)(SiiPr₂)₂(CNR)₄ plates (R=tBu or Mes) connected with three common Pd atoms, were investigated with DFT method. All Pd atoms are somewhat positively charged and the electron density is accumulated between the Pd and Si atoms, indicating that a charge transfer (CT) occurs from the Pd to the Si atoms of the SiMe₂ and SiMe groups. Negative regions of the Laplacian of the electron density were found between the Pd and Si atoms. A model of a seven‐coordinated Si species, that is, Pd₅(Pd?SiMe), is predicted to be a stable pentagonal bipyramidal molecule. Five Pd atoms in the equatorial plane form bonding overlaps with two 3p orbitals of the Si atom. This is a new type of hypervalency. The Ge analogues have geometry and an electronic structure similar to those of the Si compounds. But their formation energies are smaller than those of the Si analogues. The use of the element Si is crucial to synthesize these nanoplate compounds.     

Far‐Infrared Spectra of Yttrium‐Doped Gold Clusters AunY (n=1–9)

The geometric, spectroscopic, and electronic properties of neutral yttrium‐doped gold clusters Au_nY (n=1–9) are studied by far‐infrared multiple photon dissociation (FIR‐MPD) spectroscopy and quantum chemical calculations. Comparison of the observed and calculated vibrational spectra allows the structures of the isomers present in the molecular beam to be determined. Most of the isomers for which the IR spectra agree best with experiment are calculated to be the energetically most stable ones. Attachment of xenon to the Au_nY cluster can cause changes in the IR spectra, which involve band shifts and band splittings. In some cases symmetry changes, as a result of the attachment of xenon atoms, were also observed. All the Au_nY clusters considered prefer a low spin state. In contrast to pure gold clusters, which exhibit exclusively planar lowest‐energy structures for small sizes, several of the studied species are three‐dimensional. This is particularly the case for Au₄Y and Au₉Y, while for some other sizes (n=5, 8) the 3D structures have an energy similar to that of their 2D counterparts. Several of the lowest‐energy structures are quasi‐2D, that is, slightly distorted from planar shapes. For all the studied species the Y atom prefers high coordination, which is different from other metal dopants in gold clusters.