Reliability of Orientational Order Parameters Determined from Two‐dimensional X‐ray Diffraction Patterns: A Simulation Study

The orientational order parameter is one of the most important quantities to describe the degree of long‐range orientational ordering of liquid crystals. There are several approaches to experimentally measure this order parameter of liquid crystalline phases but every method includes substantial simplifications and assumptions. We present a simulation‐based approach to elucidate the reliability of the method of Davidson, Petermann and Levelut to measure via 2D X‐ray experiments. We have found that this method slightly underestimates by an absolute value of only 0.05 and thus provides reliable measures of by X‐ray diffraction.     

Electronic Spectroscopy of Methylcyanodiacetylene (CH3C5N)

The results of a study devoted to the electronic spectroscopy of gaseous, solid, and cryogenic matrix‐isolated methylcyanodiacetylene (CH₃C₅N) are reported. UV absorption and optical phosphorescence spectra of the compound are described here for the first time, and the corresponding vibronic assignments are proposed. UV absorption, studied directly or through the excitation of phosphorescence, revealed the ¹E‐‐ ¹A₁ system, very weak ¹A₂– ¹A₁ bands, and a strong, broad absorption feature, tentatively identified as ¹E– ¹A₁. Spectral measurements were assisted by quantum chemical calculations at the DFT and ab initio (coupled cluster) levels of theory.     

Origin of the Director Tilt in the Lyotropic Smectic C* Analog Phase: Hydration Interactions and Solvent Variations

The origin and long‐range correlation of the director tilt in the recently discovered phase, which is the lyotropic analog of the thermotropic smectic C* (SmC*) liquid crystalline phase, are investigated. Polarized micro‐Raman spectroscopy reveals that the director tilt in the phase originates from a tilting of the aromatic 2‐phenylpyrimidine cores of the surfactant molecules. Optical measurements of the tilt angle show that its magnitude decreases with increasing solvent concentration, suggesting that the long‐range inter‐lamellar correlation of the tilt directions is reduced at increasing thickness of the solvent layers. The phase diagrams with four different solvents (water, formamide, N‐methylformamide, N,N‐dimethylformamide) are investigated, showing that the phase is only formed with those solvents that exhibit a dense network of hydrogen bonds. This observation suggests that these hydrogen bond networks play an essential role in the long‐range correlation of the director tilt between adjacent surfactant layers. To verify this assumption, mixtures with deuterated solvents are investigated, showing that the tilt angle in the phase is indeed reduced by this modification of the solvent′s hydrogen bond network.     

Fluorescence Dynamics in the Endoplasmic Reticulum of a Live Cell: Time‐Resolved Confocal Microscopy

Fluorescence dynamics in the endoplasmic reticulum (ER) of a live non‐cancer lung cell (WI38) and a lung cancer cell (A549) are studied by using time‐resolved confocal microscopy. To selectively study the organelle, ER, we have used an ER‐Tracker dye. From the emission maximum of the ER‐Tracker dye, polarity (i.e. dielectric constant, ?) in the ER region of the cells (≈500 nm in WI38 and ≈510 nm in A549) is estimated to be similar to that of chloroform ( =506 nm, ?≈5). The red shift by 10 nm in in the cancer cell (A549) suggests a slightly higher polarity compared to the non‐cancer cell (WI38). The fluorescence intensity of the ER‐Tracker dye exhibits prolonged intermittent oscillations on a timescale of 2–6 seconds for the cancer cell (A549). For the non‐cancer cell (WI38), such fluorescence oscillations are much less prominent. The marked fluorescence intensity oscillations in the cancer cell are attributed to enhanced calcium oscillations. The average solvent relaxation time (<τ_s>) of the ER region in the lung cancer cell (A549, 250±50 ps) is about four times faster than that in the non‐cancer cell (WI38, 1000±50 ps).     

Dealing with the shifted and inverted Tietz–Hua oscillator potential using the J‐matrix method

The tridiagonal J‐matrix approach has been used to calculate the low and moderately high‐lying eigenvalues of the rotating shifted Tietz–Hua (RSTH) oscillator potential. The radial Schrödinger equation is solved efficiently by means of the diagonalization of the full Hamiltonian matrix, with the Laguerre or oscillator basis. Ro–vibrational bound state energies for 11 diatomic systems, namely , , , NO, CO, , , , , , and NO⁺, are calculated with high accuracy. Some of the energy states for molecules are reported here for the first time. The results of the last four molecules have been introduced for the first time using the oscillator basis. Higher accuracy is achieved by calculating the energy corresponding to the poles of the S‐matrix in the complex energy plane using the J‐matrix method. Furthermore, the bound states and the resonance energies for the newly proposed inverted Tietz–Hua IRSTH‐potential are calculated for the H₂‐molecule with scaled depth. A detailed analysis of variation of eigenvalues with n, quantum numbers is made. Results are compared with literature data, wherever possible. © 2015 Wiley Periodicals, Inc.     

Synthesis of gradient copolysiloxanes by simultaneous copolymerization of cyclotrisiloxanes and mechanism for kinetics inverse between anionic and cationic ring‐opening polymerization

Trifluoropropylmethylsiloxane–phenylmethylsiloxane gradient copolysiloxanes were synthesized by anionic and cationic ring‐opening polymerization (ROP) of 1,3,5‐tris(trifluoropropylmethyl)cyclotrisiloxane ( ) and phenylmethylcyclotrisiloxane ( ). The analysis of reactivity ratios revealed that the reactivity of toward anionic ROP was higher than that of ; however, exhibited lower reactivity compared with during the cationic ROP. AB and BAB type gradient copolymers were obtained because of a difference in the reactivity of the monomers. The microstructure of copolymers was characterized by ²⁹Si NMR spectroscopy, gel permeation chromatography, and differential scanning calorimetry. Furthermore, the mechanism for kinetics inverse of copolymerization was proposed based on the results of the optimized molecular configuration. © 2015 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2016 , 54, 835–843     

Ruthenium(II) complexes bearing pyridine‐based tridentate and bidentate ligands: catalytic activity for transfer hydrogenation of aryl ketones

Ru(II) complexes of the general formula [RuCl₂(′′)(L)] (1: ′N = N_b, L = MeOH; 2: ′N = N_b, L = CH₃CN; 3: ′N = N_d, L = CH₃CN; 4: ′N = N_p, L = CH₃CN), [Ru(p‐cymene)(_a–b)Cl]Cl (5a: N N_a = 2,2′‐bipyridine; 5b: N N_b = 4,4′‐dimethyl–2,2′‐bipyridine), [Ru(′′)(_a–b)Cl]Cl (6a: ′N = N_b, _a = 2,2′‐bipyridine; 6b: ′N = N_b, _b = 4,4′‐dimethyl‐2,2′‐bipyridine; 7a: ′N = N_d, _a = 2,2′‐bipyridine; 7b: ′N = N_d, _b = 4,4′‐dimethyl‐2,2′‐bipyridine; 8a: ′N = N_p, _a = 2,2′‐bipyridine; 8b: ′N = N_p, _b = 4,4′‐dimethyl‐2,2′‐bipyridine) and [Ru(′′)(_a)Cl]BF₄ (9a: ′N = N_b; _a = 2,2′‐bipyridine) were synthesized from the corresponding [RuCl₂(p‐cymene)]₂ dimer, ′′ and _a–b ligands. The compounds were characterized by elemental analysis, IR and NMR. Complex 9a was studied by X‐ray diffraction, confirming its cationic‐mononuclear [RuCl(_bb)(_a)]⁺ nature. The synthesized Ru(II) complexes (1–8) were employed as catalysts for the transfer hydrogenation of ketones to secondary alcohols in the presence of KOH using 2‐propanol as a hydrogen source at 82°C. The rates of the transfer hydrogenation reactions strongly depended on the type of and ancillary ligands. Copyright © 2012 John Wiley & Sons, Ltd.     

Computational Design of New Heterofullerene‐Based Biomimetic α‐Carbonic Anhydrase Analogues

The biomimetic CO₂ hydration activity of Ru/Rh‐doped fullerenes was revealed by using density functional theory calculations. The mechanism of CO₂ hydration on the proposed heterofullerenes followed the mechanistic action of α‐carbonic anhydrases, and consisted of the adsorption and deprotonation of H₂O, CO₂ interaction with hydroxyl groups, CO₂ bending, and proton transfer to give the product. Free‐energy landscapes for the reaction showed the catalysts to be active for the reaction. H₂O adsorption over the catalysts was exergonic whereas CO₂ adsorption over the catalyst–OH complex was observed to be an endergonic process. Intramolecular proton transfer resulting in the final product, , was found to be the rate‐limiting step for the reaction on C₅₆N₃M (M=Ru/Rh), whereas H₂O dissociation was found to be the rate‐limiting step for the reaction on C₅₉M (M=Ru/Rh). C₅₆N₃M catalysts were found to be superior to C₅₉M catalysts for biomimetic CO₂ hydration, as indicated by the free‐energy landscapes and energy requirements.     

Rate Constants for the Gas‐Phase Reactions of Ozone and Nitrate Radicals with the Sesquiterpenes: Valencene and Farnesol

Sesquiterpenes are constituents of a variety of essential oils that are used in flavorings, perfumes, personal care, and cleaning products. Two sesquiterpenes that are commonly used as indoor fragrances are valencene and farnesol. Knowing the reaction rate constants of these chemicals with ozone (O₃) and nitrate radical () is an important factor in determining their fate indoors. In this study, the bimolecular rate constants of , , , and were measured using the relative rate technique at 297 ± 3 K and 1 atm total pressure. Using the rate constants reported here and measured/modeled indoor concentrations of O₃ and (20 ppb and 1 ppt, respectively), pseudo–first‐order‐rate lifetimes , , , and were determined.     

Theoretical prediction of the optical rotation of chiral molecules in ordered media: A computational study of (Ra)‐1,3‐dimethylallene, (2R)‐2‐methyloxirane,and (2R)‐N‐methyloxaziridine

A theoretical procedure has been developed and implemented to calculate the optical rotation of chiral molecules in ordered phase via origin‐independent diagonal components , of the optical activity tensor and origin‐independent components , for , of the mixed electric dipole‐electric quadrupole polarizability. Origin independence was achieved by referring these tensors to the principal axis system of the electric dipole dynamic polarizability at the same laser frequency ω. The approach has been applied, allowing for alternative quantum mechanical methods based on different gauges, to estimate near Hartree–Fock values for three chiral molecules, (2R)‐N‐methyloxaziridine C₂NOH₅, (2R)‐2‐methyloxirane (also referred to as propylene oxide) C₃OH₆, and ( )‐1,3‐dimethylallene C₅H₈, at two frequencies. The theoretical predictions can be useful for an attempt at measuring correspondent experimental values in crystal phase. © 2015 Wiley Periodicals, Inc.     

The “bound wavefunction” on the repulsive excited ( ) state of the HD+ molecule

The time‐independent Schrödinger equation for the HD+ molecule is solved beyond the Born–Oppenheimer (B‐O) approximation. In the adiabatic representation, the wavefunction of the ground vibrational eigenstate is found to contain two parts: One is on the ground ( ) state which is dominant, and the other is on the repulsive excited ( ) state in the range from R = 0.0 to R = 5.0 Bohr. This is because the nonadiabatic coupling between the ground ( ) and excited ( ) states is strong in that region. The influences of the nonadiabatic coupling on the vibrational eigenfunctions are discussed in detail.     

Photodetachment of hydrogen negative ion near inelastic surfaces: Arbitrary laser polarization direction

The photodetachment of hydrogen negative ion near different inelastic surfaces is investigated by the semiclassical closed orbit theory for arbitrary laser polarization direction . A two‐term formula of photodetachment cross section consisting of a smooth background term and an oscillatory term is derived. The oscillatory term contains an extra angular factor that describes the dependence of oscillations in total cross section on the laser polarization direction. It is observed that the amplitude of oscillations in cross section reaches maximum at when laser polarization is parallel to the z‐axis and it approaches zero as the laser polarization direction becomes perpendicular to the z‐axis. It is also observed that as the reflection coefficient , which accounts for the inelastic behavior of the surfaces, increases the amplitude of oscillation also increases. © 2015 Wiley Periodicals, Inc.     

Size of a polymer chain in an environment of quenched chains

We perform high‐coordination three‐dimensional (3D) lattice simulations of a single chain of N monomers embedded in matrices of quenched chains, at different concentrations ρ, using pruned‐enriched Rosenbluth sampling. The partition function is well‐described by the expression, , where is a universal constant, and is the concentration dependent lattice connectivity constant. For sufficiently long chains, , we find that the radius of gyration R varies nonmonotonically with ρ; R decreases gradually from its unperturbed dimensions R₀ until , after which it increases relatively rapidly due to repulsion between monomers. Motivated by the similarity in the shape of the curves, and results on Gaussian chains, we successfully superpose all the simulation data onto a single master curve. Finally, we test the relationship , suggested by a Flory‐type scaling model, where ρ_c is the critical percolation threshold, and is a universal constant. © 2015 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2015 , 53, 1611–1619     

The H,H2+, and HeH2+ systems confined by an impenetrable spheroidal cavity: Revisited study via the Lagrange‐mesh approach

The one electron systems H, H , and HeH confined by an impenetrable spheroidal cavity are revisited in the frame of the Lagrange‐mesh method. The Born–Oppenheimer approximation where the nuclei are clamped at the foci is considered. Benchmark results of the total energy are obtained as a function of the interfocal distance R and the eccentricity of the cavity . Dipole oscillator strengths are calculated for the molecular ions H and HeH .     

Computational study of basis set and electron correlation effects on anapole magnetizabilities of chiral molecules

In the presence of a static, nonhomogeneous magnetic field, represented by the axial vector at the origin of the coordinate system and by the polar vector , assumed to be spatially uniform, the chiral molecules investigated in this paper carry an orbital electronic anapole, described by the polar vector . The electronic interaction energy of these molecules in nonordered media is a cross term, coupling and via , one third of the trace of the anapole magnetizability a_αβ tensor, that is, . Both and W^BC have opposite sign in the two enantiomeric forms, a fact quite remarkable from the conceptual point of view. The magnitude of predicted in the present computational investigation for five chiral molecules is very small and significantly biased by electron correlation contributions, estimated at the density functional level via three different functionals. © 2016 Wiley Periodicals, Inc.     

Additivity in kramers pairs symmetry: Multiplets with up to four unpaired electrons

Many fermions Kramers pairs formalism is considered from the prospective of the sum of individual single fermion time‐reversal operators. The obtained many fermions “pseudo Kramers pairs operator” ( ), as well as its square ( ), have formally the same structure as the many fermion spin operators and . Nevertheless, the shape of eigenfunctions with respect to and is different. Herein all Kramers adapted eigenfunctions of for cases of up to four unpaired fermions are compiled, and their properties with respect to further advocated. It will be shown that degeneracy of the multiplets recovers the proper behavior with respect to Pascal's triangle. A projection operator for obtaining the “high spin” Kramers adapted eigenfunctions is suggested. Noncommutation of with spin and angular momentum operators and degeneracy is discussed at last. © 2016 Wiley Periodicals, Inc.     

Low‐energy structures of benzene clusters with a novel accurate potential surface

The benzene‐benzene (Bz‐Bz) interaction is present in several chemical systems and it is known to be crucial in understanding the specificity of important biological phenomena. In this work, we propose a novel Bz‐Bz analytical potential energy surface which is fine‐tuned on accurate ab initio calculations in order to improve its reliability. Once the Bz‐Bz interaction is modeled, an analytical function for the energy of the clusters may be obtained by summing up over all pair potentials. We apply an evolutionary algorithm (EA) to discover the lowest‐energy structures of clusters (for ), and the results are compared with previous global optimization studies where different potential functions were employed. Besides the global minimum, the EA also gives the structures of other low‐lying isomers ranked by the corresponding energy. Additional ab initio calculations are carried out for the low‐lying isomers of and clusters, and the global minimum is confirmed as the most stable structure for both sizes. Finally, a detailed analysis of the low‐energy isomers of the n = 13 and 19 magic‐number clusters is performed. The two lowest‐energy isomers show S₆ and C₃ symmetry, respectively, which is compatible with the experimental results available in the literature. The structures reported here are all non‐symmetric, showing two central Bz molecules surrounded by 12 nearest‐neighbor monomers in the case of the five lowest‐energy structures. © 2015 Wiley Periodicals, Inc.     

Geometry of the canonical Van Vleck transformation

Bloch's transformation from the zeroth‐order space for a perturbation problem to the corresponding space of exact eigenvectors, was found as a geometrically defined alternative to the algebraically constructed Van Vleck transformation. Klein's theorem of uniqueness transferred some of this geometrical interpretation to its canonical form . Quite recently Kvaal has taken a large step further by writing as a product of commuting planar rotations, obtained by describing and in terms of certain principal vectors and canonical angles. Kvaal's approach is now developed further, using a new commutation relation which simplifies algebraic manipulations substantially. It allows for a simple definition of an operator for the angle between and which has Kvaal's vectors and angles as eigenvectors and eigenvalues. Klein's theorem is refined in various ways. The impact of the approach on a number of previous results is considered. © 2015 Wiley Periodicals, Inc.     

Multi‐Species Multi‐Channel (MSMC): An Ab Initio‐based Parallel Thermodynamic and Kinetic Code for Complex Chemical Systems

Multi‐Species Multi‐Channel (MSMC) is an ab initio parallel program to calculate thermodynamic quantities (e.g., , , , and , time‐dependent species profiles, and rate coefficients as functions of temperature and pressure for complex chemical reaction systems, which consist of multiple stable species and multiple reaction channels interconnecting them. Thermodynamic properties of the species involved are calculated using statistical mechanics with molecular information from electronic structure calculations. Temperature‐ and pressure‐dependent behaviors are rigorously characterized within the eigenpair master equation/Rice–Ramsperger–Kassel–Marcus (ME/RRKM) framework. Corrections, e.g., for hindered internal rotation and tunneling treatment, are included. With the implementation of an ultra‐high precision package and rigorous matrix setup, MSMC is able to correctly mimic real behaviors of different types of chemical systems. Different eigenpair‐based approaches to extract phenomenological/macroscopic rate coefficients are implemented for different applications. Moreover, a friendly and platform‐independent graphical‐user‐interface (GUI) is provided to facilitate the use of MSMC and the pre‐/postcalculation data visualization/analysis on the fly. The program can be freely downloaded at https://sites.google.com/site/msmccode/ .     

Ultrafast Magic‐Angle Spinning: Benefits for the Acquisition of Ultrawide‐Line NMR Spectra of Heavy Spin‐ Nuclei

The benefits of the ultrafast magic‐angle spinning (MAS) approach for the acquisition of ultrawide‐line NMR spectra—spectral simplification, increased mass sensitivity allowing the fast study of small amounts of material, efficient excitation, and application to multiple heavy nuclei—are demonstrated for tin(II) oxide (SnO) and the tin complex [(LB)Sn^IICl]⁺[Sn^IICl₃]^? [LB=2,6‐diacetylpyridinebis(2,6‐diisopropylanil)] containing two distinct tin environments. The ultrafast MAS experiments provide optimal conditions for the extraction of the chemical‐shift anisotropy tensor parameters, anisotropy, and asymmetry for heavy spin‐ nuclei.