Collision-induced reactions of size-selected molecular cluster anions

Collision-induced reactions of size-selected cluster anions, (CO₂) _n ^? and (N₂O)_nO^? with He and Kr atoms were studied at collision energies from 0.1 to 2.0 eV (center-of mass) by means of a tandem mass-spectrometer equipped with a pair of octapole ion guides. The dominant process was evaporation of the constituent molecules from the parent cluster ion. The absolute cross section for the evaporation was measured as functions of the size of the parent cluster ion and the collision energy. The reaction was explained by collisional excitation of the parent cluster ion followed by its unimolecular dissociation. The observed cross sections which correspond to those for the collisional excitation agree with those calculated in terms of charge-induced dipole and induced dipole-induced dipole interactions between the parent cluster ion and the target atom. The distributions of the product ions resulting from the unimolecular dissociation were reproduced by a simple calculation based on RRK theory. In the collision of (CO₂) _n ^? , the cross sections for (CO₂) ₁₀ ^? and (CO₂) ₁₄ ^? were significantly small and their abundances in the product ion distributions were particularly large. These findings indicate that (CO₂) ₁₀ ^? and (CO₂) ₁₄ ^? are stable species. On the other hand, stable species in (N₂O)_nO^? was found to be (N₂O)₅O^?.     

Enzyme-catalyzed,gas-phase reactions

UV-49, the mutant ofPenicillium funiculosum, showed higher production of cellulase although the specific activity with regards to filter paper activity was unaltered (0.7 U/mg). Fractionation of culture filtrates by isoelectric focusing indicated the presence of three endoglucanases and two β-glucosidases in the parent strain, whereas one endoglucanase and one β-glucosidase for UV-49. The thermostability of activity towards filter paper, CM-cellulose and ρ-nitrophenyl-β-D-glucoside of the parent strain was about 30–50% more than the corresponding activities of the mutant. The saccharification of bagasse with the enzymes from parent (66%) and mutant (62%) was comparable. However, the recovery of enzyme from residual cellulose was 10–20% less in case of the mutant. The formation of higher oligosaccharides in the hydrolysates of UV-49 on prolonged incubation indicated the presence of transglycosylation activity in the enzyme complex. In contrast the parent strain produces glucose; the desired end product of the practical saccharification.     

Kinetic study of gas-phase reactions of pinonaldehyde and structurally related compounds

Rate constants for the reactions of OH, NO₃, and O₃ with pinonaldehyde and the structurally related compounds 3-methylbutanal, 3-methylbutan-2-one, cyclobutyl-methylketone, and 2,2,3-trimethyl-cyclobutyl-1-ethanone have been measured at 300±5 K using on-line Fourier transform infrared spectroscopy. The rate constants obtained for the reactions with pinonaldehyde were: k_OH=(9.1±1.8)×10⁻¹¹ cm³ molecule⁻¹ s⁻¹, k_NO3=(5.4±1.8)×10⁻¹⁴ cm³ molecule⁻¹ s⁻¹, and k_O3=(8.9±1.4)×10⁻²⁰ cm³ molecule⁻¹ s⁻¹. The results obtained indicate a chemical lifetime of pinonaldehyde in the troposphere of about two hours under typical daytime conditions, [OH]=1.6×10⁶ molecule cm⁻³. © 1997 John Wiley & Sons, Inc. Int J Chem Kinet 29: 527–533, 1997.     

Collision-induced dissociation of halide ion-arginine complexes: evidence for anion-induced zwitterion formation in gas-phase arginine

We report the first low-energy collisional-induced dissociation studies of the X(-)·arginine (X(-) = F(-), Cl(-), Br(-), I(-), NO(3)(-), ClO(3)(-)) series of clusters to investigate the novel phenomenom of anion-induced zwitterion formation in a gas-phase amino acid. Fragmentation of the small halide ion clusters (F(-)·arginine and Cl(-)·arginine) is dominated by deprotonation of the arginine, whereas the major fragmentation channel for the largest ion clusters (I(-)·arginine and ClO(3)(-)·arginine) corresponds to simple cluster fission into the ion and neutral molecule. However, the fragmentation profiles of Br(-)·arginine and NO(3)(-)·arginine, display distinctive features that are consistent with the presence of the zwitterionic form of the amino acid in these clusters. The various dissociation pathways have been studied as a function of % collision energy and are discussed in comparison to the fragmentation profiles of protonated and deprotonated arginine. Electronic structure calculations are presented for Br(-)·arginine to support the presence of the zwitterionic amino acid in this complex. The results obtained in this work provide important information on the low-energy potential energy surfaces of these anion-amino acid clusters and reveal the presence of several overlapping surfaces in the low-energy region for the Br(-)·arginine and NO(3)(-)·arginine systems.     

Understanding organic gas-phase anion molecule reactions

Although ionic reactions in the gas phase seem on the surface to be totally different from those in solution (e.g., they typically occur about 10(12) times more rapidly than their solution analogues and go about as fast at 10 K as they do at room temperature), they can, in fact, exhibit subtle steric, electronic, and isotopic effects. In this Perspective, we show how these differences arise, explain why gas-phase ion reactions can be both fast and selective, and discuss when they can and cannot be classified as "hot" reactions. We also give examples of the use of these reactions to devise new synthetic pathways, investigate reaction mechanisms, and generate important thermochemical data such as bond dissociation energies.     

Fragmentation of oligoribonucleotides from gas-phase ion-electron reactions

We have recently demonstrated that both electron capture dissociation (ECD) and electron detachment dissociation (EDD) can provide complementary sequence-specific cleavage of DNA compared with collision activated dissociation (CAD) and infrared multiphoton dissociation (IRMPD). However, EDD is preferred because of more extensive fragmentation at higher sensitivity (due to its negative ion mode operation). Here, we extend the radical ion chemistry of these two gas-phase ion-electron reaction techniques to the characterization of RNA. Compared with DNA, rather limited information is currently available on the gas-phase fragmentation of RNA. We found that the ECD fragmentation patterns of the oligoribonucleotides A6, C6, and CGGGGC are nucleobase dependent, suggesting that cleavage proceeds following electron capture at the nucleobases. Only limited backbone cleavage was observed in ECD. EDD, on the other hand, provided complete sequence coverage for the RNAs A6, C6, G6, U6, CGGGGC, and GCAUAC. The EDD fragmentation patterns were different from those observed with CAD and IRMPD in that the dominant product ions correspond to d- and w-type ions rather than c- and y-type ions. The minimum differences between oligoribonucleotides suggest that EDD proceeds following direct electron detachment from the phosphate backbone.     

First gas-phase detection of dimethylstannylene and time-resolved study of some of its reactions

Using a laser flash photolysis/laser probe technique, we report the observation of strong absorption signals in the wavelength region 450-520 nm (highest intensity at 514.5 nm) from four potential precursors of dimethylstannylene, SnMe(2), subjected to 193 nm UV pulses. From GC analyses of the gaseous products, combined with quantum chemical excited state CIS and TD calculations, we can attribute these absorptions largely to SnMe(2), with SnMe(4) as the cleanest source of the species. Kinetic studies have been carried out by time-resolved monitoring of SnMe(2). Rate constants have been measured for its reactions with 1,3-C(4)H(6), MeC[triple bond]CMe, MeOH, 1-C(4)H(9)Br, HCl, and SO(2). No evidence could be found for reaction of SnMe(2) with C(2)H(4), C(3)H(8), Me(3)SiH, GeH(4), Me(2)GeH(2), or N(2)O. Limits of less than 10(-13) cm(3) molecule(-1) s(-1) were set for the rate constants for these latter reactions. These measurements showed that SnMe(2) does not insert readily into C-H, Si-H, Ge-H, C-C, Si-C, or Ge-C bonds. It is also unreactive with alkenes although not with dienes or alkynes. It is selectively reactive with lone pair donor molecules. The possible mechanisms of these reactions are discussed. These results represent the first visible absorption spectrum and rate constants for any organo-stannylene in the gas phase.     

A new approach for the study of gas-phase ion-ion reactions using electrospray ionization

A simple flow reactor which facilitates the study and application of ion-ion and ion-molecule reactions at near atmospheric pressures is reported. Reactant ions were generated by electrospray ionization and discharge ionization methods, although any ionization sources amenable to atmospheric pressure may be used. Ions of opposite charge are generated in spatially separate ion sources and are swept into capillary inlets where the flows are merged and where reaction(s) can occur. Among the reactions investigated were the partial neutralization of multiply protonated polypeptides and proteins such as melittin, bradykinin, cytochrome c, and myoglobin by reaction with discharge-generated anions, the partial neutralization of multiply charged anions of oligodeoxyadenylic acid (d(pA)₃) by reaction with discharge-generated cations, the partial neutralization of bovine A-chain insulin anions by reaction with myoglobin [M+nH]ⁿ⁺ ions, and the reaction of multiply protonated melittin with discharge-generated cations. The cation-anion reactions generally resulted in a shift to lower charge (higher mass-to-charge ratio) in the products’ charge state distributions and the transfer of solvent molecules to the macromolecule products. Multiply protonated melittin was detected in a less highly solvated state with the positive discharge in operation.     

Energy disposal in gas-phase nucleophilic displacement reactions

The partitioning of reaction exothermicity into relative translational energy of the products of gas-phase S_N2 (F^? + CH₃Cl) and nucleophilic aromatic substitution (F^? + C₆H₅Cl) reactions has been investigated using kinetic energy release Fourier transform ion cyclotron resonance spectroscopy. The chloride product ion is observed to be highly translationally excited for the S_N2 reaction, indicating a cold internal energy distribution for the products. For the chlorobenzene reaction the products are not generated with large translational energies. The results are compared with a statistical model. Ion-intensity profiles for the CH₃Cl reaction deviate significantly from the statistical model whereas the chlorobenzene results are consistent with this model. The kinetic energy release for the CH₃C1 reaction is compared with energy-disposal results for the photodissociation and dissociative electron-attachment processes of halomethanes. In all three cases a node in the molecular orbital between the carbon atom and the departing halogen results in a repulsive energy release. Ion-retention curves for the nucleophilic aromatic substitution reaction are consistent with the existence of a long-lived ion-dipole complex on the exit channel for this reaction.     

Ceramic microreactors for heterogeneously catalysed gas-phase reactions

The high surface to volume ratio of microchannel components offers many advantages in micro chemical engineering. It is obvious, however, that the reactor material and corrosion phenomena play an important role when applying these components. For chemical reactions at very high temperatures or/and with corrosive reactants involved, microchannel components made of metals or polymers are not suited. Hence, a modular microreactor system made of alumina was developed and fabricated using a rapid prototyping process chain. With exchangeable inserts the system can be adapted to the requirements of various reactions. Two heterogeneously catalysed gas-phase reactions (oxidative coupling of methane, isoprene selective oxidation to citraconic anhydride) were investigated to check the suitability of the system at temperatures of up to 1000 degrees C. Apart from the high thermal and chemical resistance, the lack of any blind activity was found to be another advantage of ceramic components.     

Physicochemical principles of ecological catalysis of gas-phase reactions

In this article we summarize and correlate results obtained in numerous studies of heterogeneous catalytic gasphase reactions with low reactant concentrations — mostly studies performed under the direction of the author at the L. V. Pisarzhevskii Institute of Physical Chemistry, National Academy of Sciences of the Ukraine. Physicochemical principles are defined for the catalysis of such reactions in the presence of solid catalysts. Examples are cited to illustrate the use of these relationships in developing effective catalysts and processes of ecological catalysis, particularly for catalytic treatment of gas emissions and the development of essentially zero-waste technologies in resource-conserving and energy-efficient versions.Translated from Teoreticheskaya i Éksperimental'naya Khimiya, Vol. 29, No. 6, pp. 482–500, November–December, 1993.     

Quantum dynamics of gas-phase SN2 reactions.

Understanding the state-resolved dynamics of elementary chemical reactions involving polyatomic molecules, such as the well-known reaction mechanism of nucleophilic bimolecular substitution (SN2), is one of the principal goals in chemistry. In this Review, the progress in the quantum mechanical treatment of SN2 reactions in the gas phase is reviewed. The potential energy profile of this class of reactions is characterized by two relatively deep wells, which correspond to pre- and post-reaction chargedipole complexes. As a consequence, the complex-forming reaction is dominated by Feshbach resonances. Calculations in the energetic continuum constitute a major challenge because the high density of resonance states imposes considerable requirements on the convergence and the energetic resolution of the scattering data. However, the effort is rewarding because new insights into the details of multimode quantum dynamics of elementary chemical reactions can be obtained.     

Temperature-dependent kinetics study of the gas-phase reactions of OH with n- and i-propyl bromide

An experimental, temperature-dependent kinetics study of the gas-phase reactions of hydroxyl radical with n-propyl bromide, OH+n-C3H7Br-->products (reaction 1), and i-propyl bromide, OH+i-C3H7Br-->products (reaction 2), has been performed over wide ranges of temperatures 297-725 and 297-715 K, respectively, and at pressures between 6.67 and 26.76 kPa by a pulsed laser photolysis/pulsed laser-induced fluorescence technique. Data sets of absolute bimolecular rate coefficients obtained in this study for reactions 1 and 2 demonstrate no correlation with pressure and exhibit positive temperature dependencies that can be represented with modified three-parameter Arrhenius expressions within their corresponding experimental temperature ranges: k1(T)=(1.32x10(-17))T1.95 exp(+25/T) cm3 molecule(-1) s(-1) for reaction 1 and k2(T)=(1.56x10(-24))T4.18exp(+922/T) cm3 molecule(-1) s(-1) for reaction 2. The present results, which extend the current kinetics data base of reactions 1 and 2 to high temperatures, are compared with those from previous works. On the basis of the present data and available data from previous studies, the following bimolecular rate coefficient temperature dependencies can be recommended for the purpose of kinetic modeling: k1(T)=(1.89x10(-19))T2.54exp(+301/T) cm3 molecule-1 s-1 for reaction 1 in a temperature range 210-725 K, and k2(T)=(2.83x10(-21))T3.1exp(+521/T) cm3 molecule(-1) s(-1) and k2(T)=(4.54x10(-24))T4.03exp(+860/T) cm3 molecule(-1) s(-1) for reaction 2 in temperature ranges 210-480 and 297-715 K, respectively.     

Mechanistic study of stereoselective gas-phase reactions of phosphenium ions with cis- and trans-1,2-diaminocyclohexanes

The 1,3-dioxolane-2-phosphenium ion, 1,3-benzodioxole-2-phosphenium ion, and o-biphenylenephosphenium ion are reported to react in a stereoselective manner with cis- and trans-1,2-diaminocyclohexanes in the gas phase in a Fourier transform ion cyclotron resonance mass spectrometer. Elimination of NH3 from an addition product was observed only for the trans isomer. Several reaction mechanisms were experimentally and computationally examined (B3LYP/6-31G(d)//HF/6-31G(d) + ZPVE level of theory). The most plausible mechanism is initiated by addition of one of the amino groups to the electrophilic phosphorus atom followed by proton transfer between the amino groups. A change to a diaxial conformation for the trans isomer facilitates anchimeric assistance by the now nucleophilic phosphorus atom as the C-N bond breaks to release NH3. Intramolecular proton transfer competes with the conformational change and ultimately leads to ethylene glycol elimination. The transition states for the critical steps of these two reactions are calculated to be nearly equal in magnitude, which rationalizes the observation of both reactions for the trans-diamine. In contrast, the adduct of the cis isomer can eliminate NH3 via a concerted 1,2-hydride shift without a need for a conformational change. However, the barrier associated with this reaction was found to be substantially greater than for proton transfer between the N- and O-atoms. The latter reaction dominates and ultimately leads to ethylene glycol elimination.     

The alpha-effect in gas-phase SN2 reactions revisited

This paper re-examines gas-phase S(N)2 reactions at saturated carbon for model reactions Nu(-) + CH(3)Cl --> CH(3)Nu + Cl(-) (Nu(-) = HO(-), MeO(-), NH(2)(-), HS(-), Cl(-), Br(-), I(-), HOO(-), MeOO(-), HSS(-), and NH(2)NH(-)) using the G2(+) theory. The calculated results show that the alpha-effect does exist in the gas-phase S(N)2 reaction at the sp(3) carbon, contrary to the currently accepted notion of the absence of the alpha-effect in the gas phase.     

Radiochemical study of gas-phase reactions of nucleogenic diethylgermyl cations with dibutyl ether and 1-butanol

Reactions of tritium-labeled free diethylgermyl cations with dibutyl ether and 1-butanol in a gas phase were studied by the radiochemical method. Mechanisms of the corresponding ion-molecular reactions were suggested, and the most probable paths of the cation (C₂H₅)₂TGe⁺ conversion into other isomeric forms were shown.     

A comparative study of the water-dimer gas-phase thermodynamics in the BJH- and MCYL-type flexible potentials

The standard thermodynamic terms for the gas-phase water-dimer formation and the steam second-virial coefficient isotopic difference have been evaluated for BJH- and MCYL-type flexible potentials (four potential mutations in each family). Generally, a reasonable agreement with available observed data has been found. The standard enthalpy, entropy, and Gibbs free energy terms are best described in the BJH/G, MCY-I, and MCY-L potentials, respectively. A set of thermodynamic characteristics based on the flexible potentials is selected for a further use.     

Synthesis of closo-dodecaborate based nucleoside conjugates

The first conjugates of closo-dodecaborate anion with nucleoside-thymidine were synthesized. The nucleophilic cleavage of dioxonium derivative of closo-dodecaborate by 3′,5′-bis(t-butyldimethylsilyl)-thymidine and “click” reaction between B₁₂-based azide and 3N-(4-pentyn-1-yl)thymidine were appeared as convenient approaches towards the synthesis of this new class of nucleoside-based boron cluster conjugates.