Development and validation of HPLC method for the determination of α-tocopherol in human erythrocytes for clinical applications

In this work, a simple isocratic reversed-phase HPLC method for determination of alpha-tocopherol in human erythrocytes has been developed and validated. After separation of plasma the erythrocytes were washed three times with 0.9% sodium chloride containing 0.01% butylated hydroxytoluene (BHT) as antioxidant and then were diluted 1:1 (v/v) with the same solution. In the liquid-liquid extraction (LLE) procedure, 2500 microL of n-hexane was added to 500 microL of erythrocytes. After 2 min this mixture was deproteinized by addition of cool ethanol (500 microL, 5 min) denatured with 5% methanol containing alpha-tocopherol acetate (20 micromol L(-1)), as internal standard, and then extracted for 5 min by vortex mixing. After centrifugation (10 min, 1600xg) an aliquot (2000 microL) of the clean extract was separated and evaporated under nitrogen. The residue was dissolved in 400 microL methanol and analysed by reversed-phase HPLC on a 4.6 mmx150 mm, 5 microm Pecosphere C18 column; the mobile phase was 100% methanol, flow rate 1.2 mL min(-1). The volume injected was 100 microL and detection was by diode-array detector at a wavelength of 295 nm. The extraction recovery of alpha-tocopherol from human erythrocytes was 100.0+/-2.0%. The detection limit was 0.1 micromol L(-1) and a linear calibration plot was obtained in the concentration range 0.5-20.0 micromol L(-1). Within determination precision was 5.2% RSD (n=10), between determination precision was 6.1% RSD (n=10). The method was applied successfully in a clinical study of patients with acute pancreatitis and for determination of the reference values in the healthy Czech population.     

The structures,binding energies and vibrational frequencies of Ca3 and Ca4 — An application of the CCSD(T) method

Summary The Ca₃ and Ca₄ metallic clusters have been investigated using state-of-the-artab initio quantum mechanical methods. Large atomic natural orbital basis sets have been used in conjunction with the singles and doubles coupled-cluster (CCSD) method, a coupled-cluster method that includes a perturbational estimate of connected triple excitations, denoted CCSD(T), and the multireference configuration interaction (MRCI) method. The equilibrium geometries, binding energies and harmonic vibrational frequencies have been determined with each of the methods so that the accuracy of the coupled-cluster methods may be assessed. Since the CCSD(T) method reproduces the MRCI results very well, cubic and quartic force fields of Ca₃ and Ca₄ have been determined using this approach and used to evaluate the fundamental vibrational frequencies. The infrared intensities of both thee mode of Ca₃ and thet ₂ mode of Ca₄ are found to be small. The results obtained in this study are compared and contrasted with those from our earlier studies on small Be and Mg clusters.Dedicated to Prof. Klaus Ruedenberg on the occasion of his 70th birthday     

Electrochemical preparation and characterization of magnetic core–shell nanowires for biomedical applications

Magnetic CoNi@Au core–shell nanorods have been electrochemically synthesized, characterized and functionalized to test their inherent cytotoxicity in order to assess their potential use for biomedical applications. The initially electrodeposited CoNi nanorods have been covered with a gold layer by means of galvanic displacement to minimize the nanowires toxicity and their aggregation, and favour the functionalization. The presence of a gold layer on the nanorod surface slightly modifies the magnetic behaviour of the as-deposited nanorods, maintaining their soft-magnetic behaviour and high magnetization of saturation. The complete covering of the nanorods with the gold shell favours a good functionalization with a layer of (11-Mercaptoundecyl)hexa(ethylene glycol) molecules, in order to create a hydrophilic coating to avoid the aggregation of nanorods, keeping them in suspension and give them stability in biological media. The presence of the organic layer incorporated was detected by means of electrochemical probe experiments. A cytotoxicity test of functionalized core–shell nanorods, carried out with adherent HeLa cells, showed that cell viability was higher than 80% for amounts of nanorods up to 10 μg mL^− 1. These results make functionalized nanorods promising vehicles for targeted drug delivery in medicine, which gives a complementary property to the magnetic nanoparticles.     

A direct relaxation method for calculating eigenfunctions and eigenvalues of the schrödinger equation on a grid

Eigenfunctions and eigenvalues of the Schrodinger equation are determined by propagating the Schrodinger equation in imaginary time. The method is based on representing the Hamiltonian operation on a grid. The kinetic energy is calculated by the Fourier method. The propagation operator is expanded in a Chebychev series. Excited states are obtained by filtering out the lower states. Comparative examples include: eigenfunctions and eigenvalues of the Morse oscillator, the Hénon-Heiles system and weakly bound states of He on a Pt surface.     

A method for calculating the acid–base equilibria in aqueous and nonaqueous electrolyte solutions

Russian Journal of Physical Chemistry A - Concentrations of particles in acid–base equilibria in aqueous and nonaqueous solutions of electrolytes are calculated on the basis of logarithmic...     

Paradigms and paradoxes: Hess’ law and the thermodynamic validity of Jolly’s method for estimating bond dissociation energies

This study evaluates Jolly’s method to estimate the difference in homolytic bond dissociation energy between two isoelectronic molecules by the use of atomic and ionic electronegativities. The use of intermediate species as an energetic “stepping stone” between the two diatomic species in question is discussed, particularly within the context of Hess’ law. We also show a sample calculation for a pair of diatomic species that is fully consistent with data from atomic physics.     

Prediction of CB[8] host–guest binding free energies in SAMPL6 using the double-decoupling method

This study reports the results of binding free energy calculations for CB[8] host–guest systems in the SAMPL6 blind challenge (receipt ID 3z83m). Force-field parameters were developed specific for each of host and guest molecules to improve configurational sampling. We used quantum mechanical (QM) implicit solvent calculations and QM force matching to determine non-bonded (partial atomic charges) and bonded terms, respectively. Free energy calculations were carried out using the double-decoupling method (DDM) combined with Hamiltonian replica exchange method (HREM) and Bennett acceptance ratio (BAR) method. The root mean square error (RMSE) of the predicted values using DDM with respect to the experimental results was 4.32 kcal/mol. The coefficient of determination (R²) and Kendall rank coefficient (τ) were 0.49 and 0.52, respectively, highest of all submissions. In addition, these were compared to the results obtained by umbrella sampling (US) and weighted histogram analysis method (WHAM). Overall, DDM achieved a higher prediction accuracy than the US method. Results are discussed in terms of parameterization and free energy simulations.     

Relative silver(I) ion binding energies of α-amino acids: A determination by means of the kinetic method

The relative silver(I) ion binding energies of 19 α-amino acids have been measured by means of the kinetic method. In general, they are similar to the relative copper(I) ion binding energies of corresponding amino acids although there are differences that can be accounted for by differences in silver(I) and copper(I) chemistry. The correlation with proton basicities is comparatively poorer. Again, the differences between silver(I) and proton binding can be attributed to differences in silver(I) and proton chemistry. The relative silver(I) binding energies measured are best described as relative basicities or ΔΔG _Ag ^° ’s. The observed internal consistency during construction of a silver(I) ion basicity ladder implies that ΔΔS _Ag ^° is approximately zero except when histidine and lysine are involved. For 16 α-amino acids, their relative silver(I) ion basicities ≈ relative silver(I) ion affinities or ΔΔG° _Ag ≈ ΔΔH _Ag ^° .     

Correlation between the Estrada index and π-electronic energies for benzenoid hydrocarbons with applications to boron nanotubes

In this article, we present an efficient computer-based computational technique to compute the energy and Estrada index of graphs. It is shown that our computational method is more efficient and bears less computational and algorithmic complexity. We use our method to show the main result of this article, which asserts that the Estrada index correlates with the π-electronic energies of lower benzenoid hydrocarbons with correlation coefficient 0.9993. This enhances the practical applicability of the Estrada index and warrants its further usage in quantitative structure activity relationships. We further apply our computational technique in computing the energy and Estrada index of two infinite families of boron triangular nanotubes. We perform simulation based on certain computer software packages to study the graph-theoretic behavior of the obtained results. Our results help to correlate certain physicochemical properties of underlying chemical structures of these nanotubes.     

On the fly estimation of host–guest binding free energies using the movable type method: participation in the SAMPL5 blind challenge

We review our performance in the SAMPL5 challenge for predicting host–guest binding affinities using the movable type (MT) method. The challenge included three hosts, acyclic Cucurbit[2]uril and two octa-acids with and without methylation at the entrance to their binding cavities. Each host was associated with 6–10 guest molecules. The MT method extrapolates local energy landscapes around particular molecular states and estimates the free energy by Monte Carlo integration over these landscapes. Two blind submissions pairing MT with variants of the KECSA potential function yielded mean unsigned errors of 1.26 and 1.53 kcal/mol for the non-methylated octa-acid, 2.83 and 3.06 kcal/mol for the methylated octa-acid, and 2.77 and 3.36 kcal/mol for Cucurbit[2]uril host. While our results are in reasonable agreement with experiment, we focused on particular cases in which our estimates gave incorrect results, particularly with regard to association between the octa-acids and an adamantane derivative. Working on the hypothesis that differential solvation effects play a role in effecting computed binding affinities for the parent octa-acid and the methylated octa-acid and that the ligands bind inside the pockets (rather than on the surface) we devised a new solvent accessible surface area term to better quantify solvation energy contributions in MT based studies. To further explore this issue a, molecular dynamics potential of mean force (PMF) study indicates that, as found by our docking calculations, the stable binding mode for this ligand is inside (rather than surface bound) the octa-acid cavity whether the entrance is methylated or not. The PMF studies also obtained the correct order for the methylation-induced change in binding affinities and associated the difference, to a large extent to differential solvation effects. Overall, the SAMPL5 challenge yielded in improvements our solvation modeling and also demonstrated the need for thorough validation of input data integrity prior to any computational analysis.     

Why are the Ca2+ and K+ binding energies of formaldehyde and ammonia reversed with respect to their proton affinities?

The binding energies (BEs) of alkali metal monocations and alkaline-earth metal dications to a series of small oxygen and nitrogen bases have been evaluated by means of CCSD(T) calculations on B3-LYP optimized structures. These calculations were carried out both using all-electron basis sets, and additionally using an effective-core potential (ECP) to describe the inner electrons of the metal. A theoretical model aiming at analyzing the effects on the binding energy trends of electrostatic, polarization, and covalent contributions, as well as geometry distortion, was employed. From this analysis, we conclude that although the neutral-ion interaction energy for alkali and alkaline-earth metal cations is dominated by electrostatic contributions, in many cases the correct basicity trends are only attained once polarization effects are also included in the model. This is indeed the case when Ca2+ and K+ are bound to ammonia and formaldehyde. Geometry distortions triggered by polarization are also necessary, in some cases, to obtain the correct basicity trends. In addition, in particular for alkaline-earth dications, the energy associated with covalent interactions sometimes dictates the basicity trend. Our observations imply that simple models based on ion-dipole interactions, that are frequently used in the literature to explain affinity trends in ion-molecule reactions, are generally not likely to be reliable.     

Ring-Ring Tautomerism in the Series of Isoxazolidine and Δ2-Isoxazoline Derivatives

We have studied the reaction of 5-hydroxy-3,3,5-trimethylisoxazolidine and 5-hydroxy-3,5-dimethyl-²-isoxazoline with derivatives of thiosemicarbazide and also thiocarbonohydrazine. Both reactions serve as a method for synthesis of the previously unknown 5-thiosemicarbazido(thiocarbonohydrazino)isoxazolidines and -²-isoxazolines. ¹H and ¹³C NMR spectroscopy revealed a tendency of the indicated compounds toward ring-chain and ring-ring tautomeric conversions in solutions involving the 1,2,4-triazolidine, ²-pyrazoline, and 1,2,4,5-tetrazine rings.     

Comparison and assessment of procedures for calculating the R(12) line strength of the ν1 + 2 ν2 + ν3 band of CO2

Recently, results for the CO(2) R(12) line strength parameter have been reported, which differ significantly and are inconsistent with respect to quoted uncertainties. We investigate to what extent this inconsistency might be caused by the chosen data analysis methods. To this end, we assess and compare a parametric fitting procedure and a non-parametric approach. We apply the methods to simulated and measured line spectra, and we specify the conditions required for the safe application of the two procedures. For our present data, the corresponding conditions are satisfied for both methods, and consistent results are obtained. However, the simulations reveal that the fitting procedure can show shortcomings when the uncertainty in the wavenumber is large.     

A new short route for the production of Δ2-cyclopentenone from cyclopentadiene

Summary A new 3-stage method for the production of ²-cyclopentenone from cyclopentadlene with an over-all yield of 15% has been described.     

The application of the λ parameter method to calculation of the interaction energies between two plane parallel double layers for symmetric electrolytes

The λ parameter method had successfully been applied to calculate the interaction energies between two plane parallel double layers for symmetric electrolytes. When y ₀ and |y _d | ≤ 20, the number of the series terms required to obtain the interaction energies with six significant digits is not more than 4. If we regard the interaction energies as the function of the hyperbolic function tanh (y ₀/2) instead of tanh(y ₀/4), then calculating it with the aid of λ parameter method, we can obtain above results at once. This enables one to avoid the mathematical complexity of other methods.     

Calculated vibrational structure of the first band of the photoelectron spectrum of HO 2 − and the electron affinity of HO2

The vibrational structure of the first band of the photoelectron (PE) spectrum of HO ₂ ^? and DO ₂ ^? has been calculated on the basis of (slightly modified) ab initio potentials. The best agreement with the experimental spectrum of HO ₂ ^? is obtained for a vibrational temperature of ca. 600 K. “Peak D”, which has been under debate in earlier work, is composed of two transitions, with the “hot” transition 3 ₁ ¹ being more intense than the adiabatic transition. Since thev ₂ bending mode of DO₂ has significant OO stretching character, the vibrational structure of the PE spectrum of DO ₂ ^? is more complex than that of HO ₂ ^? . Large-scale RCCSD(T) calculations of the equilibrium electron affinity of HO₂ yield 1.058 eV which agrees with the experimental value of 1.044 ± 0.020 eV.     

Direct versus indirect many-body methods for calculating vertical electron affinities: applications to F−, OH− , NH2−, CN−, Cl−, SH− and PH2−

Electron propagator theory (EPT) is applied to calculating vertical ionization energies of the anions F⁻, Cl⁻, OH⁻,SH⁻, NH₂⁻, PH₂⁻ and CN⁻. Third-order and outer valence approximation (OVA) quasiparticle calculations are compared with ΔMBPT(4) (MBPT, many-body perturbation theory) results using the same basis sets. Agreement with experiment is satisfactory for EPT calculations except for F⁻ and OH⁻, while the ΔMBPT treatments fail for CN⁻. EPT(OVA) estimates are reliable when the discrepancy between second- and third-order results is small. Computational aspects are discussed, showing relative merits of direct and indirect methods for evaluating electron binding energies.