Structure of tert-butyl carbamate-terminated thiol chemisorbed to gold

Monolayers of tert-butyl carbamate-terminated thiol were formed by adsorption of the molecules onto polycrystalline gold substrate. The adsorbates were studied using techniques as X-ray photoelectron spectroscopy (XPS), near-edge X-ray absorption fine structure spectroscopy (NEXAFS), and infrared reflection-absorption spectroscopy (IRAS). The results provide the electronic structure, composition, characteristic fingerprint, and orientation of the molecular adsorbate. XPS verified that the thiolate group is chemically bonded to the gold surface and that a complete chemisorption of the molecule occurs. Elemental depth profiling by varying the excitation energy in XPS supports the angle-dependent XPS results. Both techniques showed that the tert-butyl group is oriented away from the gold surface. A nearly parallel orientation of the carbonyl group relative to the gold surface is deduced from the IRAS results. The main molecular axis is estimated to have an average tilt angle of about 38 degrees relative to the gold surface normal on the basis of the NEXAFS results. Cyclic voltammetry indicates a less blocking capability of the adsorbates. Overall, the molecules are oriented in an upright manner with indications of presence of pinholes and/or defects possibly due to steric hindrance of the bulky tert-butyl group. This molecular system is envisioned to be of use for surface-based organic synthesis on gold substrates.     

Arg–Cys and Arg–cysteamine adsorbed on gold and the G-protein–adsorbate interaction

The dipeptide, Arg–Cys, and the related molecule, Arg–cysteamine, are adsorbed to gold surfaces and the monolayers are characterized. Chemical binding and electronic structure of the monolayers are obtained by X-ray photoelectron spectroscopy (XPS). Strong molecular binding of the adsorbates to gold surface through the sulfur atom is attained. Orientation of the adsorbates on gold is studied using infrared reflection absorption spectroscopy (IRAS). Arg–Cys is interpreted to be adsorbed on gold in a compact configuration. The Arg–cysteamine molecule is adsorbed on gold with the main molecular axis perpendicular to the surface. Interaction of G-protein with the adsorbates was studied using the surface plasmon resonance (SPR) technique. It is believed that arginine has a major role in G-protein recognition since the G-protein-coupled receptor (GPCR) ₂A has an arginine-rich region in the G-protein-binding part of the third intracellular loop.     

Metal ion interaction with phosphorylated tyrosine analogue monolayers on gold

Phosphorylated tyrosine analogue molecules (pTyr-PT) were assembled onto gold substrates, and the resulting monolayers were used for metal ion interaction studies. The monolayers were characterized by X-ray photoelectron spectroscopy (XPS), infrared reflection-absorption spectroscopy (IRAS), cyclic voltammetry (CV), and electrochemical impedance spectroscopy (EIS), both prior to and after exposure to metal ions. XPS verified the elemental composition of the molecular adsorbate and the presence of metal ions coordinated to the phosphate groups. Both the angle-dependent XPS and IRAS results were consistent with the change in the structural orientation of the pTyr-PT monolayer upon exposure to metal ions. The differential capacitance of the monolayers upon coordination of the metal ions was evaluated using EIS. These metal ions were found to significantly change the capacitance of the pTyr-PT monolayers in contrast to the nonphosphorylated tyrosine analogue (TPT). CV results showed reduced electrochemical blocking capabilities of the phosphorylated analogue monolayer when exposed to metal ions, supporting the change in the structure of the monolayer observed by XPS and IRAS. The largest change in the structure and interfacial capacitance was observed for aluminum ions, compared to calcium, magnesium, and chromium ions. This type of monolayer shows an excellent capability to coordinate metal ions and has a high potential for use as sensing layers in biochip applications to monitor the presence of metal ions.     

偶氮苯衍生物自组装单分子膜中的分子取响

利用反射红外光谱研究了金表面一系列具有不同碳链长度的偶氮苯巯基衍生物的自组装单分子膜.通过对比各向同性样品的透射谱和单分子膜的反射谱中各个吸收峰强度,定量地研究了分子中各部分的取向与分子结构的关系.我们分别提出了烷基链和偶氮基团取向计算的方法,利用该方法成功地求得了分子中各部分在膜的倾角.结果显示,当分子中烷基链长度增大时,碳链和偶氮苯基团相对于法线的倾斜逐渐加剧.这种倾角的变化归因于分子中碳链间范德华引力增大时,引起分子逐渐倾斜以达到最佳的范德华接触.同时研究发现,烷基链和偶氮基团受碳长度变化的影响并不相同.当分子中亚甲基数目增多时,烷基链的倾角迅速增大而偶氮苯倾角的增大则相对缓慢,这反映了它们在空间需求和本身刚性上的不同。     

Self-assembled monolayers derived from alkoxyphenylethanethiols having one, two, and three pendant chains

This article describes the design, synthesis, and study of alkoxyphenylethanethiol-based adsorbates with one (R1ArMT), two (R2ArMT), and three (R3ArMT) pendant octadecyloxy chains substituted at the 4-, 3,5-, and 3,4,5-positions, respectively, of the phenylethanethiol group. These adsorbates are being developed for use in the preparation of compositionally versatile "mixed" self-assembled monolayer (SAM) coatings. The resultant SAMs were characterized by ellipsometry, contact angle goniometry, polarization modulation infrared reflection-absorption spectroscopy (PM-IRRAS), and X-ray photoelectron spectroscopy (XPS). The studies revealed that R1ArMT generates a well-ordered monolayer film, while R2ArMT and R3ArMT generate monolayer films with diminished conformational order in which the degree of crystallinity decreases as follows: C18 ～ R1ArMT > R3ArMT > R2ArMT. In addition, comparison of the molecular and chain packing densities of SAMs derived from these new adsorbates reveals that the R2ArMT and R3ArMT adsorbates give rise to SAMs with reduced chain tilt and smaller surface area per chain when compared to the SAMs derived from C18 and R1ArMT.     

Self-assembled monolayers of peptide nucleic acids on gold surfaces: a spectroscopic study

We have characterized self-assembled monolayers (SAMs) of thiol-derivatized peptide nucleic acid (PNA) chains adsorbed on gold surfaces by using reflection absorption infrared spectroscopy (RAIRS) and X-ray photoemission spectroscopy (XPS) techniques. We have found that the molecular orientation of PNAs strongly depends on surface coverage. At low coverage, PNA chains lie flat on the surface, while at high coverage, PNA molecules realign their molecular axes with the surface normal and form SAMs without the need of co-immobilization of spacers or other adjuvant molecules. The change in the molecular orientation has been studied by infrared spectroscopy and it has been confirmed by atomic force microscopy (AFM). PNA immobilization has been followed by analyzing the N(1s) XPS core-level peak. We show that the fine line shape of the N(1s) core-level peak at optimal concentration for biosensing is due to a chemical shift. A combination of the above-mentioned techniques allow us to affirm that the structure of the SAMs is stabilized by molecule-molecule interactions through noncomplementary adjacent nucleic bases.     

Interaction of Cyanoacrylate with Metal Oxide Surfaces (Cu,Al)

Cyanoacrylates are an extremely reactive class of adhesives. Despite their commercial use as instant adhesives, the adhesion mechanism, especially to technically relevant oxidized metal surfaces, has not yet been sufficiently investigated. In the present work, ultra-thin ethyl cyanoacrylate films are deposited on copper oxide and aluminum oxide by spin coating and cured there. Various surface sensitive spectroscopy methods are used to identify possible interactions. X-Ray photoelectron spectroscopy (XPS) indicates, among other information, hydrogen bonding of the carbonyl group to the oxidized surfaces. Metastable induced electron spectroscopy (MIES) measurements support the theory of this preferential molecular orientation. In addition, XPS shows the presence of an ionic carboxylate (COO⁻) species at the interface. Infrared reflection adsorption spectroscopy (IRRAS) measurements confirm this ionic interaction and furthermore allow to investigate the influence of water on the reaction. A possible interaction mechanism of cyanoacrylates with metal oxides could be proposed. The formation of a carboxylate species probably occurs by hydrolysis of the ethyl group via the intermediate of a carboxyl (COOH) species.     

Application of surface science techniques to study a gilded Egyptian funerary mask: A multi-analytical approach

A wide range of analytical techniques has been used to study an Egyptian funerary mask of the Ptolemaic period (305-30 bc ). Secondary electron (SE) and back-scattering (BS) images, recorded by a scanning electron microscope (SEM), provided a detailed representation of the metallurgical techniques used to construct the gilded mask. It is confirmed, that the golden leaf used to cover the mask is the product of an antique refinery practice, so called, cementation process of naturally occurring alloy of gold and silver, namely electrum. Complementary results of SEM-electron dispersion spectroscopy (EDS) and electron probe microanalysis (EPMA)–wavelength dispersion spectroscopy (WDS) provided chemical compositions of the golden leaf as well as in the plaster base of the mask. X-ray photoemission spectroscopy (XPS) revealed the presence of Au, Ag, Si, S, Cl, Ca, and N, in addition to O and C. Relative concentration of Au/Ag at the surface has been measured by XPS to be 70% to 30%. XPS depth profiling verified silver-enrichment at the surface, as ratio of gold to silver is measured to be 80% to 20% at the depth of 15 nm. XPS chemical mapping images of gold and silver confirmed a rather inhomogeneous character of Au/Ag relative concentration at the surface. The main diffraction peaks in the X-ray diffraction (XRD) spectrum coincide with diffraction peaks of pure gold, silver metals, and magnesium calcite Mg_0.03Ca_0.97CO₃. Whereas, Raman spectroscopy results implied the existence of Ag₂S, a tarnishing compound, on the golden area of the mask.     

Self-assembled organic monolayers terminated in perfluoroalkyl pentafluoro-lambda(6)-sulfanyl (-SF5) chemistry on gold

Recently synthesized (Winter, R.; Nixon, P. G.; Gard, G. L.; Radford, D. H.; Holcomb, N. R.; Grainger, D. W. J. Fluorine Chem. 2001, 107, 23-30) SF5-terminated perfluoroalkyl thiols (SF5(CF2)nCH2CH2SH, where n = 2, 4, and 6) and a symmetric SF5-terminated dialkyl disulfide ([SF5-CH=CH-(CH2)8-S-]2) were assembled as thin films chemisorbed onto gold surfaces. The adsorbed monolayer films of these SF5-containing molecules on polycrystalline gold were compared using ellipsometry, contact angle, X-ray photoelectron spectroscopy (XPS), time-of-flight secondary ion mass spectrometry (ToF-SIMS), and infrared spectroscopy (FTIR) surface analytical methods. The resulting SF5-dialkyl disulfide monolayer film shows moderate angle dependence in depth-dependent XPS analysis, suggesting a preferentially oriented film. The SF5-terminated perfluoroalkyl thiols exhibit angular-dependent XPS compositional variance depending on perfluoroalkyl chain length, consistent with improved film assembly (increasingly hydrophobic, fewer defects, and more vertical chain orientation increasing film thickness) with increasing chain length. Tof-SIMS measurements indicate that both full parent ions for these film-forming molecules and the unique SF5 terminal group are readily detectable from the thin films without substantial contamination from other adsorbates.     

Ionic hydrogen bonds controlling two-dimensional supramolecular systems at a metal surface

Hydrogen-bond formation between ionic adsorbates on an Ag(111) surface under ultrahigh vacuum was studied by scanning tunneling microscopy/spectroscopy (STM/STS), X-ray photoelectron spectroscopy (XPS), near-edge X-ray absorption fine structure (NEXAFS), and molecular dynamics calculations. The adsorbate, 1,3,5-benzenetricarboxylic acid (trimesic acid, TMA), self-assembles at low temperatures (250-300 K) into the known open honeycomb motif through neutral hydrogen bonds formed between carboxyl groups, whereas annealing at 420 K leads to a densely packed quartet structure consisting of flat-lying molecules with one deprotonated carboxyl group per molecule. The resulting charged carboxylate groups form intermolecular ionic hydrogen bonds with enhanced strength compared to the neutral hydrogen bonds; this represents an alternative supramolecular bonding motif in 2D supramolecular organization.     

An infrared study on the chemisorption of tertiary phosphines on coinage and platinum group metal surfaces

The chemisorption of dimethylphenyl-, methyldiphenyl- and triphenylphosphine on evaporated gold, silver, copper, rhodium, iridium, palladium, platinum and nickel surfaces has been studied by means of infrared reflection–absorption spectroscopy (IRAS). Multilayers of physisorbed phosphine are formed on the surfaces of all metals studied except nickel after deposition from dilute toluene solution. The deposition rate varies for different metal surfaces and it is sometimes quite slow. The standard immersion time was 20 h in this study to secure that an equilibrium between the surface and the solution is reached. Several minutes of ultrasonic treatment are required to get rid of the physisorbed phosphine, leaving a very thin layer of chemisorbed phosphine on the metal surface. Most of the absorption bands in IRAS spectra of these thin layers show significant shifts, which are especially large for dimethylphenylphosphine. It is evident that the electron distribution in the entire phosphine molecules is changed and that the chemisorption to the coinage and platinum group metal surfaces is strong. Infrared spectra of coordination compounds of gold(I), silver(I) and copper(I) with dimethylphenyl-, methyldiphenyl- and triphenylphosphine and of the corresponding phosphine oxides have served as reference material for the chemisorbed phosphines. The spectra of the coordination compounds show similar shifts and intensity changes as the IRAS spectra of tertiary phosphines chemisorbed on the coinage and platinum group metals. This suggests that the studied phosphines are as strongly bound to the coinage and platinum group metal surfaces as to the monovalent coinage metal ions known to form very stable complexes with tertiary phosphines.     

Electronic structure of methoxy-, bromo-, and nitrobenzene grafted onto Si(111)

The properties of Si(111) surfaces grafted with benzene derivatives were investigated using ultraviolet photoemission spectroscopy (UPS) and X-ray photoelectron spectroscopy (XPS). The investigated materials were nitro-, bromo-, and methoxybenzene layers (-C(6)H(4)-X, with X = NO(2), Br, O-CH(3)) deposited from diazonium salt solutions in a potentiostatic electrochemical process. The UPS spectra of the valence band region are governed by the molecular orbital density of states of the adsorbates, which is modified from the isolated state in the gas phase due to molecule-molecule and molecule-substrate interaction. Depending on the adsorbate, clearly different emission features are observed. The analysis of XPS intensities clearly proves multilayer formation for bromo- and nitrobenzene in agreement with the amount of charge transferred during the grafting process. Methoxybenzene forms only a sub-monolayer coverage. The detailed analysis of binding energy shifts of the XPS emissions for determining the band bending and the secondary electron onset in UPS spectra for determining the work function allow one to discriminate between surface dipole layers--changing the electron affinity--and band bending, affecting only the work function. Thus, complete energy band diagrams of the grafted Si(111) surfaces can be constructed. It was found that silicon surface engineering can be accomplished by the electrochemical grafting process using nitrobenzene and bromobenzene: silicon-derived interface gap states are chemically passivated, and the adsorbate-related surface dipole effects an increase of the electron affinity.     

Preparation, characterization, and chemical stability of gold nanoparticles coated with mono-, bis-, and tris-chelating alkanethiols

A systematically varying series of monolayer-protected clusters (MPCs) was prepared by exposing small gold nanoparticles ( approximately 2 nm in diameter) to the following four adsorbates: n-octadecanethiol ( n - C18), 2-hexadecylpropane-1,3-dithiol ( C18C2), 2-hexadecyl-2-methylpropane-1,3-dithiol ( C18C3), and 1,1,1-tris(mercaptomethyl)heptadecane ( t - C18). The resultant MPCs were characterized by solubility studies, UV-vis spectroscopy, transmission electron microscopy (TEM), X-ray photoelectron spectroscopy (XPS), and Fourier-transform infrared spectroscopy (FT-IR). All of the MPCs were soluble in common organic solvents; moreover, analysis by TEM showed that the core dimensions were unaffected by exposure to any of the adsorbates. Separate studies by XPS revealed that the sulfur atoms in all MPCs were predominantly bound to the surface of gold (i.e., approximately 85% or better). Analysis by FT-IR showed that MPCs functionalized with n - C18 possessed alkyl chains having the greatest conformational order in both the solid-state and dispersed in solution; in contrast, those generated from the other three adsorbates were more liquid-like with reduced conformational order (or crystallinity). The rate of nanoparticle decomposition induced by cyanide ions was monitored by UV-vis spectroscopy. While MPCs functionalized with n - C18 showed the fastest rate of decomposition, those functionalized with C18C3 were the most resistant to decomposition. Overall, the following trend in chemical stability was observed, C18C3 > C18C2 > t - C18 > n - C18.     

Spectroscopic quantification of covalently immobilized oligonucleotides

Quantitative determination of surface coverage, film thickness and molecular orientation of DNA oligomers covalently attached to aminosilane self‐assembled monolayers has been obtained using complementary infrared and photoelectron studies. Spectral variations between surface immobilized oligomers of the different nucleic acids are reported for the first time. Carbodiimide condensation was used for covalent attachment of phosphorylated oligonucleotides to silanized aluminum substrates. Fourier transform infrared (FTIR) spectroscopy and x‐ray photoelectron spectroscopy (XPS) were used to characterize the surfaces after each modification step. Infrared reflection–absorption spectroscopy of covalently bound DNA provides orientational information. Surface density and layer thickness are extracted from XPS data. The surface density of immobilized DNA, 2–3 (×10¹³) molecules cm^?2, was found to depend on base composition. Comparison of antisymmetric to symmetric phosphate stretching band intensities in reflection–absorption spectra of immobilized DNA and transmission FTIR spectra of DNA in KBr pellet indicates that the sugar–phosphate backbone is predominantly oriented with the sugar–phosphate backbone lying parallel to the surface, in agreement with the 10–20 Å DNA film thickness derived from XPS intensities. Copyright © 2004 John Wiley & Sons, Ltd.     

XPS studies on the gold oxide surface layer formation

The initial stage of gold oxide layer formation on the gold electrode surface was investigated in 0.5 M H₂SO₄. X-ray photoelectron spectroscopy (XPS) spectra of pure gold and the anodically polarized gold electrode surface were compared quantitatively. It was found that gold anodic polarization in the E range from ∼1.3 to 2.1 V causes increase in intensity of the XPS spectra at an electron binding energy ε_b=85.9 eV for gold and at ε_b=530 eV for oxygen. These ε_b values correspond to Au³⁺ and O²⁻ oxidation states in hydrous or anhydrous gold oxide. The larger the amount of the anodically formed surface substance the higher is the intensity of the spectrum at the ε_b values mentioned above. It was concluded that gold anodic oxidation, yielding most likely an Au(III) hydroxide surface layer, takes place in the E range of the anodic current wave beginning at E≈1.3 V. At E_B=1.7 V (the potential of the Burshtein minimum) the stationary surface layer consists of 2.5 to 3 molecular layers of Au(OH)₃. The theoretical amount of charge required for the reduction of one molecular layer of Au(OH)₃ is ∼0.15 mC cm⁻², since the Au(OH)₃ molecule is planar and occupies about four atomic sites on the electrode surface.     

Water-soluble full-length single-wall carbon nanotube polyelectrolytes: preparation and characterization

HiPco single-wall carbon nanotubes (SWNTs) have been noncovalently modified with ionic pyrene and naphthalene derivatives to prepare water-soluble SWNT polyelectrolytes (SWNT-PEs), which are analogous to polyanions and polycations. The modified nanotubes have been characterized with UV-vis-NIR, fluorescence, Raman and X-ray photoelectron spectroscopy (XPS), and transmission electron microscopy (TEM). The nanotube-adsorbate interactions consist of pi-pi stacking interactions between the aromatic core of the adsorbate and the nanotube surface and specific contributions because of the substituents. The interaction between nanotubes and adsorbates also involves charge transfer from adsorbates to SWNTs, and with naphthalene sulfonates the role of a free amino group was important. The ionic surface charge density of the modified SWNTs is constant and probably controlled by electrostatic repulsion between like charges. The linear ionic charge density of the modified SWNTs is similar to that of common highly charged polyelectrolytes.     

Self-assembled monolayers derived from a double-chained monothiol having chemically dissimilar chains

The structure and conformation of self-assembled monolayers (SAMs) derived from the adsorption of a specifically designed double-chained partially fluorinated thiol having the formula 12,12,13,13,14,14,15,15,16,16,17,17,18,18,19,19,19-heptadecafluoro -2-tetradecylnona-decane-1-thiol ( 2) onto the surface of evaporated gold were examined by ellipsometry, contact angle goniometry, polarization modulation infrared reflection-absorption spectroscopy (PM-IRRAS), and X-ray photoelectron spectroscopy (XPS). The results were compared to those of SAMs generated from normal hexadecanethiol ( 1) and a structurally related single-chained partially fluorinated thiol having the formula 12,12,13,13,14,14,15,15,16,16,17,17,18,18,19,19,19-heptadecafluorononadecane-1-thiol ( 3). Collectively, the studies demonstrate that the double-chained adsorbate 2 forms SAMs on gold in which the alkyl chains are less densely packed and less conformationally ordered than those in the SAMs derived from each of the single-chained adsorbates. Furthermore, the fluorocarbon moieties in the SAMs derived from 2 are more tilted from the surface normal than those in the SAMs derived from 3. The low values of contact angle hysteresis suggest, however, that the double-chained adsorbate 2 generates homogeneous monolayer films on the surface of gold.     

Immobilization of atrazine on gold,a first step towards the elaboration of an indirect immunosensor: characterization by XPS and PM‐IRRAS

As part of our long‐term goal to design a novel type of immunosensor based on IR transduction, we devised two strategies to immobilize derivatives of the herbicide atrazine on the surface of planar gold substrates. Both strategies take advantage of the well‐known formation of self‐assembled monolayers of thiolates via spontaneous chemisorption of thiols or disulphides on noble metal surfaces. The first strategy involved the direct chemisorption of a disulphide derivative of atrazine, while the second strategy was based on the covalent attachment of a polymer tethered with atrazine derivatives to a previously adsorbed thiolate carrying a carboxylic acid head group. The resulting organic thin films on gold were characterized by polarization modulation infrared reflection‐absorption spectroscopy (PM‐IRRAS) and XPS. The binding of a polyclonal anti‐atrazine antibody to both sensing layers was also tested and compared. It appeared that specific molecular recognition occurred only on the atrazine disulphide sensing layer. Copyright © 2006 John Wiley & Sons, Ltd.     

Molecular Suction Pads: Self‐Assembled Monolayers of Subphthalocyaninatoboron Complexes on Gold

Subphthalocyaninatoboron complexes with six long‐chain alkylthio substituents in their periphery are applicable for the formation of self‐assembled monolayers (SAMs) on gold. Such films are prepared from solution with the axially chlorido‐substituted derivatives and characterised by near‐edge X‐ray absorption fine structure (NEXAFS) spectroscopy, X‐ray photoelectron spectroscopy (XPS) and time‐of‐flight secondary ion mass spectrometry (ToF‐SIMS). The results are in accord with the formation of SAMs assembled by the chemisorption of both covalently bound thiolate‐type as well as coordinatively bound thioether units. The adsorbate molecules adopt an essentially flat adsorption geometry on the substrate, resembling a suction pad on a surface.