Theoretical analysis of the Jahn-Teller distortions in tetrathiolato iron(II) complexes

Crystallographic studies of [Fe(SR)(4)](2-) (R is an alkyl or aryl residue) have shown that the Fe(II)S(4) cores of these complexes have (pseudo) D2d symmetry. Here we analyze the possibility that these structures result from a Jahn-Teller (JT) distortion that arises from the e(3z(2) - r(2), x(2) - y(2)) orbital ground state of Fe(II) in T(d)symmetry. Special attention is paid to the influence of the second-nearest neighbors of Fe, which lowers the symmetry and reduces the full JT effect to a smaller, pseudo JT effect (PJT). To estimate the size of the PJT distortion, we have determined the vibronic parameters and orbital state energies for a number of [Fe(SR)(4)](2-) models using density functional theory (DFT). Subsequently, this information is used for evaluating the adiabatic potential surfaces in the space of the JT-active coordinates of the FeS(4) moiety. The surfaces reveal that the JT effect of Fe(II) is completely quenched by the tetrathiolate coordination.     

Interaction of nitric oxide with tetrathiolato iron(II) complexes: relevance to the reaction pathways of iron nitrosyls in sulfur-rich biological coordination environments

The mechanism of formation of dinitrosyl iron complexes (DNICs) coordinated by cysteine residues at iron-sulfur protein sites has received little attention in the chemical literature. As a logical first step toward elucidating this mechanism and characterizing new iron-nitrosyl intermediates, we investigated the interaction of NO (g) and NO+ with iron-sulfur complexes chosen to mimic sulfur-rich iron sites in biology. The reaction of NO (g) with [Fe(StBu)4]2- cleanly affords the mononitrosyl complex, [Fe(StBu)3(NO)]- (1), a previously unknown species evoked in this chemistry. Reaction of [Fe(StBu)4]2- with NO derivatives, such as NO+, yields the corresponding dinitrosyl S-bridged Roussin red ester [Fe2(mu-StBu)2(NO)4] (2). The nitrosyl complexes 1 and 2 can chemically convert to the DNIC, [Fe(StBu)2(NO)2]- (3). The results should aid in the spectroscopic identification and elucidation of reaction pathways for the nitrosylation of iron in biologically related sulfur-rich coordination environments.     

The structure and reactivity of iron nitride complexes

The structure and reactivity of discrete iron nitride complexes is described. Six-coordinate, four-fold symmetric nitrides are thermally unstable, and have been characterized at cryogenic temperatures by an arsenal of spectroscopic methods. By contrast, four-coordinate, three-fold symmetric iron nitrides can be prepared at room temperature. A range of diamagnetic iron(IV) nitrides have been reported and in some cases, isolated. Among these are the isolable, yet reactive, tris(carbene)borate iron(IV) nitrides. These complexes can effect two-electron nitrogen atom transfer to a range of substrates, in some cases with complete atom transfer occuring through Fe-N bond cleavage. These nitrides are also active in single electron pathways, including the synthesis of ammonia by a mechanism involving hydrogen atom transfer to the nitride ligand. One-electron oxidation of a tris(carbene)borate iron(IV) nitride leads to an isolable iron(V) complex that is unusually reactive for a metal nitride.     

Synthesis and molecular structure of iron carbonyl complexes of germanium

Conclusions The authors have synthesized new iron carbonyl complexes of Ge with carbofunctional substituents at the germanium atom and investigated them by the x-ray structural method.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 3, pp. 490–495, March, 1981.     

Electronic structure of bispidine iron(IV) oxo complexes

The electronic structure, based on DFT calculations, of a range of FeIV=O complexes with two tetra- (L1 and L2) and two isomeric pentadentate bispidine ligands (L3 and L4) is discussed with special emphasis on the relative stability of the two possible spin states (S = 1, triplet, intermediate-spin, and S = 2, quintet, high-spin; bispidines are very rigid diazaadamantane-derived 3,7-diazabicyclo[3.3.1]nonane ligands with two tertiary amine and two or three pyridine donors, leading to cis-octahedral [(X)(L)FeIV=O]2+ complexes, where X = NCCH3, OH2, OH-, and pyridine, and where X = pyridine is tethered to the bispidine backbone in L3, L4). The two main structural effects are a strong trans influence, exerted by the oxo group in both the triplet and the quintet spin states, and a Jahn-Teller-type distortion in the plane perpendicular to the oxo group in the quintet state. Due to the ligand architecture the two sites for substrate coordination in complexes with the tetradentate ligands L1 and L2 are electronically very different, and with the pentadentate ligands L3 and L4, a single isomer is enforced in each case. Because of the rigidity of the bispidine ligands and the orientation of the "Jahn-Teller axis", which is controlled by the sixth donor X, the Jahn-Teller-type distortion in the high-spin state of the two isomers is quite different. It is shown how this can be used as a design principle to tune the relative stability of the two spin states.     

Electronic structure of dinuclear iron nitrosyl complexes with different ligands at two iron centers

The electronic structures of three dinuclear iron complexes were determined with the DFT method. The complexes contain a {Fe(NO)₂}⁹ unit and thiolate, nitrosyl, carbonyl and amine ligands at the second iron atom. The two iron atoms are bridged by thiolate ligands. In the lowest energy states of these complexes, the iron atoms possess spin S = 1, 3/2 or 5/2, depending on the coordinated ligands and their mutual arrangement. Nitrosyl is coordinated as NO⁻ antiferromagnetically coupled to iron, and the two iron units are antiferromagnetically coupled to each other.     

Octupole-like supramolecular aggregates of conical iron fullerene complexes into a three-dimensional liquid crystalline lattice

The installation of three structural features into a fullerene molecule, a conical shape, a polar iron-ferrocene complex, and long alkyl chains, allowed dipolar molecules 1 and 2 to undergo microphase separation and to form a three-dimensional lattice in a crystalline and a thermotropic liquid crystalline phase. The key feature is a tetrameric octupole-like aggregate, in which four dipoles are arranged supramolecularly to cancel the molecular polarity, forming a sphere. In addition to this lattice formation mechanism, the molecules incorporate noteworthy features, such as redox active C(60)/ferrocene and luminescent cyclophenacene.     

细胞死亡蛋白的三维结构及活性位点的理论研究

利用同源模建和分子动力学模拟方法,构建了细胞死亡蛋白（CED-10）的三维结构,并预测了其可能的活性位点,为细胞死亡蛋白家族催化机理的深入研究提供了、重要的参考信息．     

The structure of iron(III) complexes with carbamide derivatives

Infrared spectra of new iron(III) complexes with urea derivatives: [Fe (CH₃HNCONH₂)₆]X₃; [Fe(C₂H₅HNCONH₂)₆]X₃ and [Fe(CH₃-HNCONHCH₃)₆]X₃ (where X = Cl^?, NO^?₃ or $\text{1}\text{2}$SO^2?₄) have been recorded and their interpretation given. The analysis of the infrared spectra was based on a comparison of the positions of bands corresponding to the vibrations of characteristic groups appearing in the complexes and the free ligands. Comparison and analysis of the data show that the urea derivatives coordinate with mono- and disubstituted iron(III) through the oxygen atom of the carbonyl group.     

Theoretical analysis of the fluxional behaviour of cyclooctatetraene Ru and Ni complexes

Cyclooctatetraene's (COT) behaviour in some of its Ni and Ru complexes is studied by means of DFT methods (B3LYP and BLYP). The experimentally observed COT fragment conformational changes (tub-shaped or planar) are analysed, together with the different locations of metal–carbon bonds in the complexes. These phenomena are studied using both static and molecular dynamics calculations. The results allow us to predict changes in the COT fragment, which goes from aromatic to totally antiaromatic, depending on its environment. This situation favours the electronic flow through the metal atoms into the organometallic molecules, giving place to different geometries that generate the dynamic fluxional behaviour.     

Unusual electronic structure of bis-isocyanide complexes of iron(III) porphyrinoids

A series of isocyanide complexes, [Fe(Porphyrinoid)((t)BuNC)(2)](+), were synthesized and examined for their physicochemical properties. The molecular structure of the bis((t)BuNC) adduct of the iron(III) porphycene (1) and corrphycene (2) adopting the (d(xy))(2)(d(xz), d(yz))(3) ground state were determined for the first time. Furthermore, 1 and 2 showed unusual crossover phenomena between different electron configurations, (d(xy))(2)(d(xz), d(yz))(3) ground state and (d(xz), d(yz))(4)(d(xy))(1) ground state, by the addition of the external stimuli.     

Theoretical investigation of the molecular structure of aluminium triisopropoxide and its complexes in ring-opening polymerization

We present a theoretical study on aluminium triisopropoxide (Al(OⁱPr)₃) using both empirical (Molecular Mechanics, MM, with Dreiding II force field) and quantum-chemical (Austin Model 1, AM1, semiempirical Hartree-Fock) techniques. We determine the most stable geometries for both the tetramer and trimer of aluminium triisopropoxide as well as the thermodynamic characteristics of the equilibrium existing between these two aggregated structures. The theoretical results are compared to experimental data from X-ray diffraction and ²⁷A1 NMR measurements. For the tetramer, it appears that the optimal equilibrium geometries are in good agreement with the experimental X-ray diffraction geometry; another geometry is also obtained with both theoretical approaches, which is slightly less stable but of higher symmetry. On the basis of the most stable configurations for the tetramer and trimer aggregates, the variation of free enthalpy (ΔG) between the two aggregated structures has been estimated. The evolution of the theoretical ΔG values indicates a displacement of equilibrium towards the trimer species with temperature, in good agreement with experimental ¹H and ²⁷A1 NMR data. Moreover, the AM1 heats of formation show a gain of 33.9 kcal/mol due to the aggregation of four A1(OⁱPr)₃ instead of three, and thus a better stability of the tetramer. The molecular geometries being well described by the theoretical methods used in this study, we also present a model for the ring-opening polymerization complexes of ε-caprolactone and lactides.     

Theoretical conformational analysis of cyclopendant phosphorus-organic complexes,derivatives of triazacyclononane

The method of molecular mechanics has been used to calculate the strain energy of complex formation of two new phosphorus-organic cyclopendant ligands, derivatives of 1,4,7-triazacyclononane. It is shown that lengthening the pendant groups by one CH₂ unit increases the volume of the ligand cavity in hexadentate coordination. However, this requires a large strain energy, which leads to a loss of stability of the complexes with metal cations. A decrease in the strain energy for penta- and tetradentate ligand profiles accounts for the appearance of selectivity towards cations with small radii. Modifying the structure of cyclopendants based on triazacyclononane by means of benzene rings does not produce a ligand profile with a definite structure, or selective binding of metal cations.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 5, pp. 1075–1079, May, 1990.     

Synthesis and structure of iron(iii) diamine-bis(phenolate) complexes

The structures and properties of six new iron(iii) diamine-bis(phenolate) complexes are reported. Reaction of anhydrous FeX(3) salts (where X = Cl or Br) with the diprotonated tripodal tetradentate ligands 2-pyridylamino-N,N-bis(2-methylene-4-methyl-6-tert-butylphenol), H(2)[L(1)], and N,N-dimethyl-N',N'-bis(2-methylene-4-methyl-6-tert-butylphenol)ethylenediamine, H(2)[L(2)], produces the trigonal bipyramidal iron(iii) complexes, [L(1)]FeCl , [L(1)]FeBr , [L(2)]FeCl and [L(2)]FeBr . Reaction of FeX(3) with the related linear tetradentate ligand N,N'-bis(4,6-tert-butyl-2-methylphenol)-N,N'-bismethyl-1,2-diaminoethane, H(2)[L(3)], generates square pyramidal iron(iii) complexes, [L(3)]FeCl and [L(3)]FeBr . Complexes have been characterized using electronic absorption spectroscopy and magnetometry. Single crystal X-ray molecular structures have been determined for complexes 1, 3, 5 and 6.     

Synthesis and structure of iron(III) complexes containing a quasi-crownether ring

A barium-iron(III) [BaFe(cr-salen)(py)₂](ClO₄)₃ (1) was prepared and an iron(III) complex [Fe(cr-salen)(py)₂]ClO₄ (2) complex was obtained by removing Ba²⁺ ion from the barium-iron(III) complexes with guanidinium sulfate. These complexes are in the high-spin state both in the solid state and in acetonitrile. Single crystals of [BaFe(cr-salen)(MeOH)₂]₂O(ClO₄)₄·2MeOH (3) were obtained by slow evaporation of a solution of (2) and Ba(ClO₄)₂, and the single crystal X-ray structure of (3) was determined: Crystal data for [BaFe(cr-salen)(MeOH)₂]₄O₂(ClO₄)₄·2MeOH: C₂₅H₃₆N₂O_17.5Cl₂BaFe, are: space group C2/c, Z=8, a=24.79(7) Å, b=16.11(6) Å, c=17.24(6) Å, V=6753(36) ų, R=0.133, R_w=0.154. The structure of the complex has a one order polymeric chain. An iron atom is located in a cavity of square pyramidal geometry and bridged by an oxygen atom of μ-oxo. A barium ion is sitted in a quasi-crownether ring and bridged by two perchlorate anions.     

Theoretical study of rhenium dinuclear complexes: Re-Re bonding nature and electronic structure

Four dinuclear rhenium complexes, [Re2Cl8](2-) (1), [Re2(mu-Cl)3Cl6](2-) (2a), [Re2(mu-Cl)3Cl6](-) (2b), and [Re2(mu-Cl)2Cl8](2-) (3), were theoretically investigated by the CASSCF, MRMP2, SA-CASSCF, and MCQDPT methods. Interesting differences in electronic structure and Re-Re bonding nature among these complexes are clearly reported here, as follows: In 1, the ground state is the 1A1g state. The approximate stabilization energies by the sigma, pi, and delta bonding interactions are evaluated to be 4.36, 2.89, and 0.52 eV, respectively, by the MRMP2 method. In 2a, the ground state is the 2E" state. The approximate stabilization energy by two degenerate delta bonding interactions is estimated to be 0.36 eV by the MCQDPT method. One delta bonding interaction of 2a is much weaker than that of 1, which is discussed in terms of the Re-Re distance and the Re oxidation state. In 2b, the ground state is the 1A1' state, of which multiconfigurational nature is extremely large unlike that of the 2E" ground state of 2a despite similarities between 2a and 2b. In 3, the sigma, pi, and delta bonding interactions are not effectively formed between two Re centers. As a result, the 1Ag, 3B1u, 5Ag, and 7B1u states are in almost the same energy within 0.03 eV. This result is consistent with the paramagnetism of 3 experimentally reported.