Self-assembled monolayers of clamped oligo(phenylene-ethynylene-butadiynylene)s

Rigid rod oligo(phenylene-ethynylene-butadiynylene)s (oPEBs), "half-rings" of two rigid rods connected via a molecular clamp unit, and shape-persistent macrocycles (cyclic "half-ring dimers") are synthesized and their self-assembled monolayers (SAMs) are investigated by scanning tunneling microscopy (STM) at the interface of 1,2,4-trichlorobenzene (TCB)/highly oriented pyrolytic graphite (HOPG). The results are important for the design of molecular building blocks for two-dimensional nanoscale architectures on solid surfaces.     

Fine-tuning of relative metal-metal distances within highly ordered chiral 2D nanopatterns

The two-dimensional nanopatterning of a series of neutral alkoxy/alkyl-functionalised bis(salicylaldehydato)/bis(aldiminato)copper(II) and -palladium(II) complexes at a liquid/solid (highly oriented pyrolytic graphite, HOPG) interface has been studied by scanning tunnelling microscopy (STM). The relative metal-metal distances were tuned stepwise in two dimensions by ligand design. Exchange of the carbonyl O-atom for NH or N-alkyl units effects different intermolecular interactions such as weak hydrogen bonds and steric effects that determine, together with the van der Waals forces between the alkyl chains, the relative arrangements of the complexes. Further variation of the length and position of the alkoxy side chains as well as the exchange of CuII for PdII affords an absolute fine-tuning of the surface structures. Highly resolved STM images of the resultant highly ordered adlayers allow us to establish detailed models of the molecular 2D arrays and to classify them into three basic chiral pattern types. Homochirality within the individual domains is induced by the highly regular deposition of the prochiral complexes from the same enantiotopic face. In the case of the C12 O-substituted bis(salicylaldiminato) (NH) Cu(II) complex Cu5, a secondary structure occurs as a racemic mixture of two chiral surface species deposited in a distinct alternating order.     

Oligoethylene chains terminated by ferrocenyl end groups: synthesis, structural properties, and two-dimensional self-assembly on surfaces

A series of unsaturated long-chain-bridged diferrocenes Fc-(CH2)n-CH=CH-(CH2)n-Fc (4 a-e) was synthesized by means of olefin metathesis. Subsequent catalytic hydrogenation furnished the saturated alpha,omega-bis-ferrrocenyl oligoethylene products Fc-(CH2)m-Fc (5). Members of both series formed highly ordered laminar structures at the highly oriented pyrolytic graphite (HOPG) solid/liquid interface or on the Ag(110) surface, which were characterized by STM. Details of the structural features of these ordered physisorbed surface assemblies of 4 and 5 were analyzed by comparison with DFT calculations on model systems and with the characteristic packing modes of these systems in the crystal.     

Effect of molecular mass on supramolecular organisation of poly(4,4'-dioctyl-2,2':5',2'-terthiophene)

The effect of the chain length on the type and extent of the 2D supramolecular organization in poly(4,4'-dioctyl-2,2':5',2'-terthiophene) (PDOTT) monomolecular layers deposited on highly oriented pyrolytic graphite (HOPG) is studied by scanning tunneling microscopy (STM) and analyzed in terms of molecular modeling. The strictly monodispersed fractions of increasing molecular mass used in this study were obtained by chromatographic fractionation of the crude product of 4,4'-dioctyl-2,2':5',2'-terthiophene oxidative polymerization. STM investigations of PDOTT layers, deposited on HOPG from poly- and monodispersed fractions, show that polydispersity can be considered as a key factor seriously limiting supramolecular ordering. This is a consequence of significant differences in the type of supramolecular order observed for molecules of different chain length. It has been demonstrated that shorter molecules (consisting of 6 and 9 thiophene units) form well-defined two-dimensional islands, while the interactions between longer molecules (consisting of 12 and 15 thiophene units) become anisotropic. Consequently, for higher molecular mass fractions, the supramolecular organization is one-dimensional and consists of more or less separated rows of ordered macromolecules. In this case an increase of the chain length leads to amplification of the intermolecular interactions proceeding via interdigitation of the alkyl substituents of adjacent molecules. Polydispersed fractions show much less ordered organization because of the incompatibility of the supramolecular structures of molecules of different molecular masses. This finding is of crucial importance for the application of polythiophene derivatives in organic and molecular electronics since ordered supramolecular organization constitutes the condition sine qua non of good electrical transport properties.     

Some Unusual Features of Highly Oriented Pyrolytic Graphite Observed by Electrochemical Scanning Tunneling Microscopy

HOPGisoneofthemostcommonlyusedsubstratesinSTMforitiseasilycleavedtoalargeatondcallyflatareaonthebasalplane.ExceptforO.246nmperiodicityrelatedregularatomicstructure,thedefectsandothervarious5e,t,,,,nativetothebasa1planeofHOPGcancoverasmuchasl-lO%ofthesurface.'Ofthesefeatures,stepsarethe'mostconunonlyobserved.'ThewidespreaduseofthissubstratehasledtothediscoveryofsomecrystalimperfectionsnativetothebasalplaneofHOPG',includingstackingfaults,graphitestrandsandfibers,brokenorflakedIayersandsup…     

Adsorption characteristic of self‐assembled corrole dimers on HOPG

Our study first focus on two types of corrole dimers oxidized and reduced forms on highly oriented pyrolytic graphite (HOPG) surface. Scanning tunneling microscopy (STM), X‐ray photoelectron spectroscopy (XPS) and contact angle measurement (CAM) were used to investigate the self‐assembled monolayers of corrole dimers adsorbed on HOPG surfaces at room temperature in air. XPS and CAM results have confirmed both two molecules adsorbed on an HOPG surface and formed self‐assembled films, and STM experiments found that the corrole dimers adsorbed on HOPG surfaces form similar lobes. The different stable space structure of the oxidized form molecule (OFM) and reduced form molecule (RFM), led to the diversity of the tetramer structural dimensions. The occurrence of molecular aggregations and assembly was controlled by the interactions between molecular–molecular and molecule–substrate. The electrostatic interactions between the molecules control the geometrical sizes and molecule–substrate interactions determine topographical shapes of the self‐assembled corrole dimers on HOPG surface. Copyright © 2009 John Wiley & Sons, Ltd.     

High Resolution Scanning Tunneling Microscopy of a 1D Coordination Polymer with Imidazole‐Based N,N,O Ligands on HOPG

Novel κ³‐N,N,O ligands tend to form 1D coordination polymer strands. Deposition of 1D structures on highly oriented pyrolytic graphite (HOPG) was achieved from diluted solutions and polymer strands have been studied on HOPG by AFM/STM. Single strands were mapped by STM and their electronic properties were subsequently characterized by current imaging tunneling spectroscopy (CITS). Periodic density functional calculations simulating a polymer strand deposited on a HOPG surface are in agreement with the zig‐zag structure indicated by experimental findings. Both the observed periodicity and the Zn–Zn distances can be reproduced in the simulations. Van der Waals interactions were found to play a major role for the geometry of the isolated polymer strand, for the adsorption geometry on HOPG, as well as for the adsorption energy.     

Self-organization of gold-containing hydrogen-bonded rosette assemblies on graphite surface

The self-organization of supramolecular structures, in particular gold-containing hydrogen-bonded rosettes, on highly oriented pyrolytic graphite (HOPG) surfaces was investigated by tapping-mode atomic force microscopy (TM-AFM) and scanning tunneling microscopy (STM). TM-AFM and high-resolution STM results show that these hydrogen-bonded assemblies self-organize to form highly ordered domains on HOPG surfaces. We find that a subtle change in one of the building blocks induces two different orientations of the assembly with respect to the surface. These results provide information on the control over the construction of supramolecular nanoarchitectures in 2D with the potential for the manufacturing of functional materials based on structural manipulation of molecular components.     

2D supramolecular structures of a shape-persistent macrocycle and co-deposition with fullerene on HOPG

Two 2D supramolecular structures of macrocycle 1 and 1/C60 have been obtained on HOPG by self-assembly under ambient conditions and investigated by high-resolution STM. The monolayers of 1 are characterized by structures with perfect ordering over relatively large areas. In the case of 1/C60, the size of the macrocycle 1 and the presence of two individual bithiophene units per ring lead in the final superstructure to a 1:2 stoichiometry. The fullerenes are not trapped at the graphite surface inside the macrocyclic holes but are located around the periphery of the bithiophene units. This clearly shows that the donor-acceptor interaction between C60 and the electron-rich units of the ring is the dominant factor for the structure formation.     

Two-dimensional self-assembly of linear molecular rods at the liquid/solid interface

We report on the synthesis and scanning tunneling microscopy (STM) studies of a series of linear molecular rods (1-5) comprising different numbers and/or spatial arrangements of perfluorinated benzene and benzene subunits interlinked with diacetylenes in the para position and decorated with or without terminal dodecyl chains. The molecules organize themselves into well-ordered 2D crystal structures at the liquid/solid interface through intermolecular and molecule-substrate interactions. Whereas the molecules substituted by dodecyl chains form the lamellar structures with alternating rigid core rows and alkyl chain rows, the unsubstituted ones change the orientation of the rigid backbones with respect to the lamellar axis. The molecular arrangement is not influenced by fluoro substituents on any phenyl ring of the backbone, which suggests that the interactions between the π-conjugated backbones are dominated by close packing rather than by the dipole moments of the rods or fluorine-based intermolecular interactions.     

β-联碳酰基类衍生物有序自组装膜的STM研究

在大气条件下, 利用扫描隧道显微镜研究了四个β-联碳酰基类衍生物在高定向裂解石墨(HOPG)表面的自组装结构. 研究分子的结构中均包含π电子共轭体系和烷基链. 实验研究了分子结构对自组装结构的影响, 并利用分子结构的变化实现了自组装膜结构的调控. 结果表明, 在甲苯溶剂中制备的这些自组装结构均长程有序, 分子间氢键和偶极相互作用是影响自组装膜结构变化的重要因素.     

STM studies on adsorbed liquid crystal on HOPG

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In situ electrochemical scanning tunnelling microscopy investigation of structure for horseradish peroxidase and its electricatalytic property

Immobilization of protein molecules is a fundamental problem for scanning tunnelling microscopy (STM) measurements with high resolution. In this paper, an electrochemical method has been proved to be an effective way to fix native horseradish peroxidase (HRP) as well as inactivated HRP from electrolyte onto a highly oriented pyrolytic graphite (HOPG) surface. This preparation is suitable for both ex situ and in situ electrochemical STM (ECSTM) measurements. In situ STM has been successfully employed to observe totally different structures of HRP in three typical cases: (1) in situ ECSTM reveals an oval-shaped pattern for a single molecule in neutral buffer solution, which is in good agreement with the dimension determined as 6.2×4.3×1.2. nm³ by ex situ STM for native HRP; (2) in situ ECSTM shows that the adsorbed HRP molecules on HOPG in a denatured environment exhibit swelling globes at the beginning and then change into a V-shaped pattern after 30 min; (3) in situ ECSTM reveals a black hole in every ellipsoidal sphere for inactivated HRP in strong alkali solution. The cyclic voltammetry results indicate that the absorbed native HRP can directly catalyse the reduction of hydrogen peroxide, demonstrating that a direct electron transfer reduction occurred between the enzyme and HOPG electrode, whereas the corresponding cyclic voltammograms for denatured HRP and inactivated HRP adsorbed on HOPG electrodes indicate a lack of ability to catalyse H₂O₂ reduction, which confirms that the HRP molecules lost their biological activity. Obviously, electrochemical results powerfully support in situ STM observations.     

Enantiomerically pure chiral coordination polymers: synthesis, spectroscopy, and electrochemistry in solution and on surfaces

The two enantiomerically pure bridging ligands (+/-)-[ctpy-x-ctpy] have been prepared employing a two-fold stereospecific alkylation reaction of the enantiomerically pure, chiral terpyridyl-type ligands (+/-)-ctpy. The reaction of each of the enantiomerically pure bridging ligands with Fe(2+) gives rise to chiral coordination polymers whose formation and stoichiometry were followed spectrophotometrically. An assignment of the absolute configuration of the formed helical polymeric structures was carried out on the basis of circular dichroism studies. Highly ordered domains (as determined from STM imaging) of the enantiomerically pure chiral redox polymers could be prepared via the interfacial reaction, over an HOPG substrate, of the bridging ligand in CH(2)Cl(2) and FeSO(4) in water. The degree of polymerization was estimated to be up to 60 from analysis of the STM images of the highly ordered domains on HOPG. The helicality of the domains was compared to the configuration obtained from the circular dichroism studies. The electrochemical properties of the polymers were investigated using cyclic voltammetry and the results compared to those of the respective monomeric complexes. The redox behavior of the iron centers in the polymer was comparable to that of the monomeric complex [Fe((-)-ctpy)(2)](PF(6))(2) as well as to that of [Fe(tpy)(2)](PF(6))(2). The polymeric materials undergo electrodeposition following the two-electron reduction of each bridging ligand unit (one electron per terpyridine group). No ligand-mediated metal-metal interactions were evident from the cyclic voltammetric measurements, suggesting that the metal centers act independently. Moreover, oxidation of the metal centers within the polymeric materials did not give rise to electrodeposition.     

Structure and reactivity of Ru nanoparticles supported on modified graphite surfaces: a study of the model catalysts for ammonia synthesis

Supported ruthenium metal catalysts have higher activity than traditional iron-based catalysts used industrially for ammonia synthesis. A study of a model Ru/C catalyst was carried out to advance the understanding of structure and reactivity correlations in this structure-sensitive reaction where dinitrogen dissociation is the rate-limiting step. Ru particles were grown by chemical vapor deposition (CVD) via a Ru(3)(CO)(12) precursor on a highly oriented pyrolytic graphite (HOPG) surface modified with one-atomic-layer-deep holes mimicking activated carbon support. Scanning tunneling microscopy (STM) has been used to investigate the growth, structure, and morphology of the Ru particles. Thermal desorption of dissociatively adsorbed nitrogen has been used to evaluate the reactivity of the Ru/HOPG model catalysts. Two different Ru particle structures with different reactivities to N(2) dissociation have been identified. The initial sticking coefficient for N(2) dissociative adsorption on the Ru/HOPG model catalysts is approximately 10(-6), 4 orders larger compared to that of Ru single-crystal surfaces.     

Multiscale imaging and tip-scratch studies reveal insight into the plasma oxidation of graphite

The plasma oxidation process of highly oriented pyrolytic graphite (HOPG) has been investigated through a combination of multiscale (micrometric to atomic) imaging by atomic force and scanning tunneling microscopies (AFM/STM) and STM tip-scratching of the HOPG substrate. Complementary information was obtained by Raman spectroscopy and X-ray photoelectron spectroscopy (XPS). Repetitive imaging of the same HOPG location following a series of consecutive plasma treatments allowed an accurate determination of the plasma etch rates along both the a and c crystallographic directions of the graphite lattice. The etch rates were typically in the range of a few nm per min along the a axis, and the equivalent of 1-6 graphene layers per min along the c axis. The results pointed to the existence of two main plasma etching regimes, related to short (<20-30 min) and long (> or =30 min) treatment times. This was inferred not only from the measured plasma etch rates but also from the observation of fundamental differences in the atomic-scale surface structure of the plasma-treated HOPG samples, and from the general mechanical behavior of the materials under the action of the AFM tip. In particular, atomic-scale STM imaging suggested a change from a defected, but essentially graphitic, surface in the first regime to an amorphous carbon surface in the second regime. Together with AFM and STM, Raman spectroscopy and XPS provided a consistent picture of the surface structure and chemistry of the plasma-modified HOPG in the two regimes. The implications of these results as well as the possible mechanism that drives the plasma etching process in the two regimes are discussed.     

异代酯基枝状分子表面组装及结构转化机理的STM研究

利用扫描隧道显微技术(STM)研究了3种异代酯基Janus枝状分子(G₁G₂COOCH₃, G₀G₃COOCH₃, G₁G₃COOCH₃)在高定向裂解石墨(HOPG)表面的组装结构. 室温下, G₁G₂COOCH₃, G₀G₃COOCH₃和G₁G₃COOCH₃分别在表面形成有序、局部有序及无序结构. 将样品加热至60~80 ℃后, 表面无序结构可以转化为有序的二聚体密堆积结构. 实验结果表明, 随着枝状分子代数的增加, 分子之间及分子与基底之间作用力增强, 室温下分子组装行为更依赖于分子吸附动力学过程, 组装结构趋于无序化, 而加热可以增强枝状分子在表面的活动性, 调整分子的位置关系, 使表面无序结构转化为热力学稳定的有序二聚体密堆积组装结构.     

Shape-persistent macrocycles with intraannular polar groups: synthesis, liquid crystallinity, and 2D organization

The synthesis of macrocycles with intraannular polar ester groups and extraannular oligo-alkyl groups is described. The compounds exhibit stable liquid crystalline phases showing fan-shaped textures under the polarizing microscope, typical for a columnar order of the molecules. X-ray powder diffraction data of the LC phase indicate that the unit cell contains two symmetry-related units, a feature pointing most probably to a restricted rotation of the macrocycles within a stack. The X-ray data were further supported by solid-state NMR experiments, showing that the rigid core of the compounds does not rotate with kHz or higher frequencies within the column in the LC phase. Apart from the organization of the molecules in the LC phase, the 2D organization of the macrocycles at the solvent-highly oriented pyrolytic graphite (HOPG) interface was investigated and showed that these compounds are capable of nanofunctionalizing the HOPG surface in the multinanometer regime.     

Self-assembly of amphiphilic hexapyridinium cations at the air/water interface and on HOPG surfaces.

Mono- and multilayers of a novel amphiphilic hexapyridinium cation with six eicosyl chains (3) are spread at the air/water interface as well as on highly ordered pyrolytic graphite (HOPG). On water, the monolayer of 3 is investigated by recording surface pressure/area and surface potential/area isotherms, and by Brewster angle microscopy (BAM). Self-organized tubular micelles with an internal edge-on orientation of molecules form at the air/water interface at low surface pressure whereas multilayers are present at high surface pressure, after a phase transition. Packing motifs suggesting a tubular arrangement of the constituting molecules were gleaned from atomic force microscopy (AFM) investigations of Langmuir-Blodgett (LB) monolayers being transferred on HOPG at different surface pressures. These LB film structures are compared to the self-assembled monolayer (SAM) of 3 formed via adsorption from a supersaturated solution, which is studied by scanning tunnelling microscopy (STM). On HOPG the SAM of 3 consists of nanorods with a highly ordered edge-on packing of the aromatic rings and an arrangement of alkyl chains which resembles the packing of molecules at the air/water interface at low surface pressure. Additional details of the molecular packing were gleaned from single-crystal X-ray structure analysis of the hexapyridinium model compound 2b, which possesses methyl instead of eicosyl residues.     

Coadsorption-induced reconstruction of supramolecular assembly characteristics.

A host supramolecular structure consisting of bis-(2,2':6',2"-terpyridine)-4'-oxyhexadecane (BT-O-C16) is shown to respond to coadsorbed molecules in dramatic ways, as observed by scanning tunneling microscopy (STM) on a highly oriented pyrolytic graphite (HOPG) surface under ambient conditions. Interestingly, the lattice parameter of the triphenylene-filled complex differs significantly from that of the coronene-filled one, although the triphenylene and coronene molecules are nearly the same size. The STM study and density functional theory calculations reveal that intermolecular hydrogen-bond interactions play an essential role in forming the assembly structures. The different electronic properties of coronene and triphenylene molecules are responsible for the difference in lattice parameters and consequently for the difference in filling behaviors in the coronene/BT-O-C16 and triphenylene/BT-O-C16 binary systems.