NMR experiments on acetals—XXXIX: Conformational insights through NMR studies at 300 MHz of 2-methyl-4-halogenomethyl-1,3-dioxolanes

NMR spectra of cis- and trans-2-methyl-4-halogeno-methyl-1,3-dioxolanes have been analysed at 300 MHz. Some of the extracted parameters facilitate easy distinction between these 1,3-dioxolanes and the corresponding structurally isomeric 2-Methyl-5-halogeno-1,3-dioxanes. Criteria enabling configurational assignments to be made for the cis-trans isomers of the dioxolane series are tested. The Me-2 group causes an upfield shift (0·2 to 0·3 ppm) of a trans proton at position 5, but the reversed shift for the corresponding cis proton. This competes with, or even overwhelms the effect of the CH₂X-4 substituent, which by virtue of its pronounced preferential rotameric orientation and in comparison with a simple Me-group, has no large upfield effect on the shift of the syn-adjacent proton. Shift criteria and coupling constants J_{H-4, H-5} in cis- and trans derivatives allow further conformational insights into these 1,3-dioxolanes.     

Conformational analysis. XIII—A 300 MHz 1H NMR study of 2-methyl-, 2-phenyl-, 2-(2-chlorophenyl)-and 2-(4-chlorophenyl)-oxetanes

The 300 MHz spectra of 2-methyl-, 2-phenyl-, 2-(2-chlorophenyl)- and 2-(4-chlorophenyl)-oxetanes were recorded in CCl₄ and C₆D₆. The chemical shifts and the proton-proton coupling constants were solved through iterative calculations. The results were discussed in the light of structural factors and theoretical calculations. The average angle of pucker for the oxetane ring was estimated at c. 5°, in fair agreement with the value of 3·3° derived from a microwave study.     

Conformational study on telaprevir by HPLC–DAD–MS and theoretical calculation

Telaprevir is a potent, selective, peptidomimetic inhibitor of the hepatitis C virus (HCV) NS3‐4A serine protease. it is used for the treatment of HCV infection in combination with peginterferon alfa and ribavirin. In the present work, the E–Z isomerization process of telaprevir in solution was revealed by online HPLC–DAD (diode array detector)–MS, variable‐temperature and variable‐gradient experiments. The molecular geometry information of the two isomers was established by molecular mechanics calculations, and good correlation between the two isomers' UV–vis spectra and their molecular geometry information was also discovered. In addition, it was revealed by molecular docking that the two isomers have different affinities to HCV NS3?4A protease, and the Z isomer, the minor form of telaprevir in solution, is the more effective inhibitor of HCV NS3?4A protease. The investigation can provide more structure information about telaprevir in solution and in the binding process of HCV NS3?4A protease.     

300 MHz 1H-NMR study of poly(propylene sulfide)

An ¹H 300-MHz NMR spectroscopic study of deuterated poly(propylene sulfide) shows that methylene protons are sensitive to triad effects. It was possible to distinguish i, h_i, s, and h_s triads. Experimental values found for different polymers are in good agreement with theoretical amounts obtained from statistical probability calculation. The methyl groups are also slightly stereosensitive. By using optically active deuterated monomers with different R/S ratios it was possible to confirm the assignment of peaks and the tacticity. Nondeuterated polymers give very complicated spectra, and only the highly stereoregular polymer could be analyzed through its ABCX₃ spin system.     

Conformational sensitivity analysis of FKBP–FK506/rapamycin complexes

Sensitivity analysis techniques are applied to the FKBP–FK506 and FKBP–rapamycin complexes to quantify the conformational relationships between FKBP and its ligands. Crystal structures of the two FKBP complexes are energy minimized in the Amber force field using a continuum solvent model, and derived Green's function sensitivity coefficients are developed to describe the relationship between the ?, ψ, and χ₁ torsional angles of the FKBP residues and the bound ligand macrocycle torsional angles. Sensitivity analysis is applied to the entire FKBP structure and reveals that the local conformation of the residues of the 80s and 50s loops and of the active site are sensitive to the ligand conformation. The analysis also reveals that the torsional angles controlling the orientation of the amide and keto carbonyls of FK506 are sensitive to the aromatic side chains in the FKBP carbonyl binding pocket. © 1994 by John Wiley & Sons, Inc.     

Conformational analysis of melatonin at Hartree–Fock ab initio level

Melatonin is a hormone, which is synthesized and secreted by the pineal gland during darkness and has been implicated in the regulation of several neural and endocrine processes. Conformational analysis of melatonin was performed at Hartree–Fock ab initio level. With the help of STO-3G and 6-31G* basis sets, 192 and 128 conformers were obtained, respectively. In both cases, there were eight conformers with nearly planar 3-amido-side chain and the most stable conformation found had folded structure in accord with previously published results. The present paper compares the Hartree–Fock conformational space of melatonin with the results of active conformation models and conformational analyses published in the literature.     

Conformational analysis of vitamin K<Subscript>1</Subscript> model molecule: a theoretical study

Isomerism, conformations, and molecular structure of a model molecule of vitamin K₁ with a truncated side chain have been studied by the density functional theory calculations using B3LYP method and double- and triple-ζ correlation consistent basis sets. The conformations of two possible (E and Z) isomers, formed by the rotations around three single C–C bonds closest to the naphthoquinone ring, have been studied. The lowest energy conformers are stabilized by additional hydrogen bonds between hydrogen atoms of the side chain and an oxygen atom in the naphthoquinone subunit. It is interesting to note that the structure of the energetically preferred conformer of the E-isomer (3c) has been found to be similar to the solid state structures of phylloquinones in the photosystem I of cyanobacterium Synechococcus elongatus. The excited electronic states of two lowest energy conformers have also been investigated.     

Conformational analysis of 12-crown-4

An extensive conformational analysis of 12-crown-4 was performed. A new method for the generation of the approximate geometry was proposed and applied. More than 100 new low energy conformations of the compound were calculated.     

Protoporphyrin IX‐Functionalized AgSiO2 Core–Shell Nanoparticles: Plasmonic Enhancement of Fluorescence and Singlet Oxygen Production

Metal‐enhanced processes arising from the coupling of a dye with metallic nanoparticles (NPs) have been widely reported. However, few studies have simultaneously investigated these mechanisms from the viewpoint of dye fluorescence and photoactivity. Herein, protoporphyrin IX (PpIX) is grafted onto the surface of silver core silica shell NPs in order to investigate the effect of silver (Ag) localized surface plasmon resonance (LSPR) on PpIX fluorescence and PpIX singlet oxygen (¹O₂) production. Using two Ag core sizes, we report a systematic study of these photophysical processes as a function of silica (SiO₂) spacer thickness, LSPR band position and excitation wavelength. The excitation of Ag NP LSPR, which overlaps the PpIX absorption band, leads to the concomitant enhancement of PpIX fluorescence and ¹O₂ production independently of the Ag core size, but in a more pronounced way for larger Ag cores. These enhancements result from the increase in the PpIX excitation rate through the LSPR excitation and decrease when the distance between PpIX and Ag NPs increases. A maximum fluorescence enhancement of up to 14‐fold, together with an increase in photogenerated ¹O₂ production of up to five times are obtained using 100 nm Ag cores coated with a 5 nm thick silica coating.     

Protoporphyrin IX–β‐Cyclodextrin Bimodal Conjugate: Nanosized Drug Transporter and Potent Phototoxin

Topical or systemic administration of 5‐aminolevulinic acid (ALA) and its esters results in increased production and accumulation of protoporphyrin IX (PpIX) in cancerous lesions allowing effective application of photodynamic therapy (PDT). The large concentrations of exogenous ALA practically required to bypass the negative feedback control exerted by heme on enzymatic ALA synthesis and the strong dimerization propensity of ALA are shortcomings of the otherwise attractive PpIX biosynthesis. To circumvent these limitations and possibly enhance the phototoxicity of PpIX by adjuvant chemotherapy, covalent bonding of PpIX with a drug carrier, β‐cyclodextrin (βCD) was implemented. The resulting PpIX + βCD product had both carboxylic termini of PpIX connected to the CD. PpIX + βCD was water soluble, was found to preferentially localize in mitochondria rather than in lysosomes both in MCF7 and DU145 cell lines while its phototoxiciy was comparable to that of PpIX. Moreover, PpIX + βCD effectively solubilized the breast cancer drug tamoxifen metabolite N‐desmethyltamoxifen (NDMTAM) in water. The PpIX + βCD/NDMTAM complex was readily internalized by both cell lines employed. Furthermore, the multimodal action of PpIX + βCD was demonstrated in MCF7 cells: while it retains the phototoxic profile of PpIX and its fluorescence for imaging purposes, PpIX + βCD can efficiently transport tamoxifen citrate intracellularly and confer cell death through a synergy of photo‐ and chemotoxicity.     

ANOVA–principal component analysis and ANOVA–simultaneous component analysis: a comparison

ANOVA–simultaneous component analysis (ASCA) is a recently developed tool to analyze multivariate data. In this paper, we enhance the explorative capability of ASCA by introducing a projection of the observations on the principal component subspace to visualize the variation among the measurements. We compare the significance of experimental effects for ASCA and ANOVA–principal component analysis (PCA), a similar tool to explore multivariate data, by using permutation tests. Furthermore, we quantify the quality of the loadings estimate obtained with ASCA and compare this with the loadings estimate obtained with ANOVA–PCA. Copyright © 2011 John Wiley & Sons, Ltd.     

Conformational features and anion-binding properties of calix[4]pyrrole: a theoretical study

The conformational preference of calix[4]pyrrole and its fluoride and chloride anion-binding properties have been investigated by density functional theory calculations. Geometries were optimized by the BLYP/3-21G and BLYP/6-31G methods, and energies were evaluated with the BLYP/6-31+G method. To model the effect of medium, the SCIPCM solvent model was also employed. Four typical conformations of the parent substituent-free calix[4]pyrrole were studied. Both in the gas phase and in CH(2)Cl(2) solution, the stability sequence is predicted to be 1,3-alternate > partial cone > 1,2-alternate > cone. The cone conformation is predicted to be about 16.0 and 11.4 kcal/mol less stable in the gas phase and CH(2)Cl(2) solution, respectively. This is mainly due to electrostatic repulsions arising from the all-syn pyrrole/pyrrole/pyrrole/pyrrole arrangement present in this conformer. The existence of possible 1:1 and 1:2 anion-binding modes were explored in the case of fluoride anion, and the factors favoring the 1:1 binding mode are discussed. The calculated binding energy for fluoride anion is about 15 kcal/mol larger than that for chloride anion. The calculated binding energy for chloride anion agrees with the experimental value very well. The presence of meso-alkyl substituents destabilizes the cone conformer with respect to the 1,3-alternate conformer and, therefore, reduces the anion-binding affinity by 3-4 kcal/mol. The strength of N-H- - -anion hydrogen bonds in the various structures subject to study were estimated on the basis of the calculated anion-binding energies and the predicted structural deformation energies of substituent-free calix[4]pyrrole.     

Conformational energy calculation on the neurotensin c-terminal pentapeptide Arg–Pro–Tyr–Ile–Leu OH

The conformational behavior of the C-terminal neurotensin pentapeptide, Arg–Pro–Tyr–Ile–Leu OH [NT(9–13)], was investigated using empirical energy calculations. A special aim was to display the specific contribution of each residue to induce conformations able to interact with biological receptors. Restrictions were then introduced in intramolecular interactions involving the Arg side chain and the terminal COOH group. The stablest conformations include in the order of decreasing stability: a distorted helical form for the C-terminal tetrapeptide, a (Pro₂–Tyr₃) β turn I, an α helix, an extended form, and a (Tyr₂–Ile₃) β turn III, which are energetically rather close (ΔE < 3 kcal/mol). The NT(9–13) peptide appears then as a rather flexible molcule with a noteworthy ability of adaptation to a substrate. Extended forms would be in agreement with a zipper model of interactions with receptors, whereas folded forms involving helices and β, γ turns would support a lock and key model. The specific contribution of side chains, specially those of Tyr and Arg residues as well as the key position of the Pro residue emerge clearly from this study.     

Mixed‐Valence Ruthenium Complexes Rotating through a Conformational Robin–Day Continuum

The conformational energy landscape and the associated electronic structure and spectroscopic properties (UV/Vis/near‐infrared (NIR) and IR) of three formally d⁵/d⁶ mixed‐valence diruthenium complex cations, [{Ru(dppe)Cp*}₂(μ‐C≡CC₆H₄C≡C)]⁺, [ 1 ]⁺, [trans‐{RuCl(dppe)₂}₂(μ‐C≡CC₆H₄C≡C)]⁺, [ 2 ]⁺, and the Creutz–Taube ion, [{Ru(NH₃)₅}₂(μ‐pz)]⁵⁺, [ 3 ]⁵⁺ (Cp=cyclopentadienyl; dppe=1,2‐bis(diphenylphosphino)ethane; pz=pyrazine), have been studied using a nonstandard hybrid density functional BLYP35 with 35 % exact exchange and continuum solvent models. For the closely related monocations [ 1 ]⁺ and [ 2 ]⁺, the calculations indicated that the lowest‐energy conformers exhibited delocalized electronic structures (or class III mixed‐valence character). However, these minima alone explained neither the presence of shoulder(s) in the NIR absorption envelope nor the presence of features in the observed vibrational spectra characteristic of both delocalized and valence‐trapped electronic structures. A series of computational models have been used to demonstrate that the mutual conformation of the metal fragments—and even more importantly the orientation of the bridging ligand relative to those metal centers—influences the electronic coupling sufficiently to afford valence‐trapped conformations, which are of sufficiently low energy to be thermally populated. Areas in the conformational phase space with variable degrees of symmetry breaking of structures and spin‐density distributions are shown to be responsible for the characteristic spectroscopic features of these two complexes. The Creutz–Taube ion [ 3 ]⁵⁺ also exhibits low‐lying valence‐trapped conformational areas, but the electronic transitions that characterize these conformations with valence‐localized electronic structures have low intensities and do not influence the observed spectroscopic characteristics to any notable extent.     

Variationen modulo 4–4+, 4+3–3+4–, 4–5+, 5–4+4–5+4–4+ bei Seltenerdcarbidhalogeniden

The new compounds Pr₈(C₂)₄Cl₅ (1), Pr₁₄(C₂)₇Cl₉ (2), Pr₂₂(C₂)₁₁Cl₁₄ (3), Ce₂(C₂)Cl (4), La₂(C₂)Br (5), Ce₂(C₂)Br (6), Pr₂(C₂)Br (7), Ce₁₈(C₂)₉Cl₁₁ (8), and Ce₂₆(C₂)₁₃Cl₁₆ (9) were prepared by heating mixtures of LnX₃, Ln and carbon or in an alternatively way LnX₃, and “Ln₂C_3–x” in appropriate amounts for several days between 750 and 1200 °C. The crystal structures were investigated by X‐ray powder analysis (5–7) and/or single crystal diffraction (1–4, 8, 9). Pr₈(C₂)₄Cl₅ crystallizes in space group P2₁/c with the lattice parameters a = 7.6169(12), b = 16.689(2), c = 6.7688(2) Å, β = 103.94(1) °, Pr₁₄(C₂)₇Cl₉ in Pc with a = 7.6134(15), b = 29.432(6), c = 6.7705(14) Å, β = 104.00(3) °, Pr₂₂(C₂)₁₁Cl₁₄ in P2₁/c with a = 7.612(2), b = 46.127(9), c = 6.761(1) Å, β = 103.92(3) °, Ce₂(C₂)₂Cl in C2/c with a = 14.573(3), b = 4.129(1), c = 6.696(1) Å, β = 101.37(3) °, La₂(C₂)₂Br in C2/c with a = 15.313(5), b = 4.193(2), c = 6.842(2) Å, β = 100.53(3) °, Ce₂(C₂)₂Br in C2/c with a = 15.120(3), b = 4.179(1), c = 6.743(2) Å, β = 101.09(3) °, Pr₂(C₂)₂Br in C2/c with a = 15.054(5), b = 4.139(1), c = 6.713(3) Å, β = 101.08(3) °, Ce₁₈(C₂)₉Cl₁₁ in P$\bar{1}$ with a = 6.7705(14), b = 7.6573(15), c = 18.980(4) Å,α = 88.90(3) °, β = 80.32(3) °, γ = 76.09(3) °, and Ce₂₆(C₂)₁₃Cl₁₆ in P2₁/c with a = 7.6644(15), b = 54.249(11), c = 6.7956(14) Å, β = 103.98(3) ° The crystal structures are composed of Ln octahedra centered by C₂ dumbbells. Such Ln₆(C₂)‐octahedra are condensed into chains which are joined into undulated sheets. In compounds 1–4 three and four up and down inclined ribbons alternate (4₊4_–, 4₊3_–3₊4_–, 4₊4_–3₊4_–4₊3_–), in compounds 8 and 9 four and five (4₊5_–, 5₊4_–4₊5_–4₊4_–), and in compounds 4–7 one, one ribbons (1₊1_–) are present. The Ln‐(C₂)‐Ln layers are separated by monolayers of X atoms.     

Mass spectroscopy of natural products. IX—comparative positive–negative ion mass spectroscopic investigation of plumieride

The positive and negative ion mass spectra of plumieride and its pentaacetyl derivative are reported and compared. Using high resolution measurements and low voltage ionization techniques the main fragmentation processes are discussed.