Entropic stochastic resonance of a flexible polymer chain in a confined system

We have studied the dynamics of a flexible polymer chain in constrained dumb-bell-shape geometry subject to a periodic force and external noise along the longitudinal direction. It is found that the system exhibits a feature of entropic stochastic resonance (ESR), i.e., the temporal coherence of the polymer motion can reach a maximum level for an optimal noise intensity. We demonstrate that the occurrence of ESR is robust to the change of chain length, while the bottleneck width should be properly chosen. A gravity force in the vertical direction is not necessary for the ESR here, however, the elastic coupling between polymer beads is crucial.     

An adaptive single-well stochastic resonance algorithm applied to trace analysis of clenbuterol in human urine

Based on the theory of stochastic resonance, an adaptive single-well stochastic resonance (ASSR) coupled with genetic algorithm was developed to enhance the signal-to-noise ratio of weak chromatographic signals. In conventional stochastic resonance algorithm, there are two or more parameters needed to be optimized and the proper parameters values were obtained by a universal searching within a given range. In the developed ASSR, the optimization of system parameter was simplified and automatic implemented. The ASSR was applied to the trace analysis of clenbuterol in human urine and it helped to significantly improve the limit of detection and limit of quantification of clenbuterol. Good linearity, precision and accuracy of the proposed method ensure that it could be an effective tool for trace analysis and the improvement of detective sensibility of current detectors.     

Photoluminescence spectra of a conjugated polymer: from films and solutions to single molecules

The purpose of this work is to address the issue of applicability of single-molecule spectroscopy (SMS) results for conjugated polymers to "bulk" samples, e.g. conjugated polymer films. Also, some apparent inconsistencies in the literature on SMS regarding the photoluminescence spectral position of conjugated polymers are discussed. We present a series of photoluminescence spectra of thin films of the conjugated polymer poly(2-methoxy-5-(2'-ethyl-hexyloxy)-1,4-phenylene-vinylene) (MEH-PPV) with a wide range of varying thickness. The thickness was varied from approximately 20 nm to the value corresponding to well-separated single molecules (SMS sample). The thickness variation resulted in a strong ( approximately 2000 cm(-1)) blue-shift and broadening of the spectrum. The result was reproduced on isolated molecules embedded into a PMMA matrix. This effect cannot be explained by a decrease in energy transfer "freedom" alone. We performed a comprehensive comparison of presented and elsewhere published spectra of MEH-PPV polymer and oligomers in different samples: films, solutions, isolated-molecule coatings and standard SMS samples. The comparison allows that the main reason behind the blue shift is conformational disorder, which is largely dependent on the sample. We also discuss some experimental aspects of SMS, such as representativeness of detected molecules, spectral sensitivity of a setup and temperature. Together with differences in sample preparation method, these issues can explain the existing inconsistencies in the literature.     

Incompatibility in polymer solutions: Light scattering of two polymers in a single solvent

The fluctuation theory of light scattering for moderately concentrated polymer solutions is extended in a phenomenological fashion to include angle-dependent terms up to sin² (θ/2). The treatment is based on an uncoupling of the center of mass and segment contributions to the free enthalpy. In particular, equations are derived for three-component mixtures containing two polymer and one solvent component. These are applied near the region of incompatibility. The results are compared with Debye's theory of critical opalescence. It is found that the Debye l parameter should be of the order of magnitude of the radii of gyration of the polymer molecules. This is confirmed by some experiments.     

Fluorescence of single molecules in polymer films: sensitivity of blinking to local environment

The single-molecule fluorescence blinking behavior of the organic dye Atto647N in various polymer matrixes such as Zeonex, PVK, and PVA as well as aqueous media was investigated. Fluorescence blinking with off-times in the millisecond to second time range is assigned to dye radical ions formed by photoinduced electron transfer reactions from or to the environment. In Zeonex and PVK, the measured off-time distributions show power law dependence, whereas, in PVA, no such dependence is observed. Rather, in this polymer, off-time distributions can be best fitted to monoexponential or stretched exponential functions. Furthermore, treatment of PVA samples to mild heating and low pressure greatly reduces the frequency of blinking events. We tentatively ascribe this to the removal of water pockets within the polymer film itself. Measurements of the dye immobilized in water in the presence of methylviologen, a strongly oxidizing agent, reveal simple exponential on- and off-time distributions. Thus, our data suggest that the blinking behavior of single organic molecules is sensitive to their immediate environment and, moreover, that fluorescence blinking on- and off-time distributions do not inherently and uniquely obey a power law.     

Functionalization of single layers and nanofibers: a new strategy to produce polymer nanocomposites with optimized properties

Nanocomposites are the emerging materials of the 21st century in view of their possessing design uniqueness without any compromises, certain unusual property combinations that are not found in conventional composites, as well as a wide spectrum of applications. Polymer-based layered compound nanocomposites have special place in view of their best property enhancement. Hence, the objective of this article is to bring new ideas to optimize the design of polymer/layered compounds/fibrous nanocomposites, starting with a brief overview of the preparation, structure, properties and applications. The proposed strategy suggests the use of synthetic and natural layered compounds, taking into account their ability to be exfoliated in the form of single layers, which can be chemically grafted with key molecules. The same procedure can also be applied to fibrous materials. These surface-grafted molecules can carry reactive groups to be bonded to the polymer matrices. Thus adhesion between the reinforcement and the polymer matrix can be achieved. This methodology, which has not been explored systematically in the specialized literature, can be used to produce polymer nanocomposites with low-cost fibrous materials having similarity to expensive carbon nanotubes exhibiting optimized dispersion, interfacial bonding, and attractive physical and other properties.     

How do monomeric components of a polymer gel dosimeter respond to ionising radiation: A steady-state radiolysis towards preparation of a 3D polymer gel dosimeter

Ionising radiation-induced reactions of aqueous single monomer solutions and mixtures of poly(ethylene glycol) diacrylate (PEGDA) and N,N′-methylenebisacrylamide (Bis) in a steady-state condition are presented below and above gelation doses in order to highlight reactions in irradiated 3D polymer gel dosimeters, which are assigned for radiotherapy dosimetry. Both monomers are shown to undergo radical polymerisation and cross-linking, which result in the measured increase in molecular weight and radius of gyration of the formed polydisperse polymer coils. The formation of nanogels was also observed for Bis solutions at a low concentration. In the case of PEGDA-Bis mixtures, co-polymerisation is suggested as well. At a sufficiently high radiation dose, the formation of a polymer network was observed for both monomers and their mixture. For this reason a sol–gel analysis for PEGDA and Bis was performed gravimetrically and a proposition of an alternative to this method employing a nuclear magnetic resonance technique is made. The two monomers were used for preparation of 3D polymer gel dosimeters having the acronyms PABIG and PABIG^nx. The latter is presented for the first time in this work and is a type of the formerly established PABIG polymer gel dosimeter. The elementary characteristics of the new composition are presented, underlining the ease of its preparation, low dose threshold, and slightly increased sensitivity but lower quasi-linear range of dose response in comparison to PABIG.     

Universal properties of a single polymer chain in slit: Scaling versus molecular dynamics simulations

We revisit the classical problem of a polymer confined in a slit in both of its static and dynamic aspects. We confirm a number of well known scaling predictions and analyze their range of validity by means of comprehensive molecular dynamics simulations using a coarse-grained bead-spring model of a flexible polymer chain. The normal and parallel components of the average end-to-end distance, mean radius of gyration and their distributions, the density profile, the force exerted on the slit walls, and the local bond orientation characteristics are obtained in slits of width D=4/10 (in units of the bead diameter) and for chain lengths N=50/300. We demonstrate that a wide range of static chain properties in normal direction can be described quantitatively by analytic model-independent expressions in perfect agreement with computer experiment. In particular, the observed profile of confinement-induced bond orientation is shown to closely match theory predictions. The anisotropy of confinement is found to be manifested most dramatically in the dynamic behavior of the polymer chain. We examine the relation between characteristic times for translational diffusion and lateral relaxation. It is demonstrated that the scaling predictions for lateral and normal relaxation times are in good agreement with our observations. A novel feature is the observed coupling of normal and lateral modes with two vastly different relaxation times. We show that the impact of grafting on lateral relaxation is equivalent to doubling the chain length.     

Miscibility behavior and single chain properties in polymer blends: a bond fluctuation model study

Computer simulation studies on the miscibility behavior and single chain properties in binary polymer blends are reviewed. We consider blends of various architectures in order to identify important architectural parameters on a coarse grained level and study their qualitative consequences for the miscibility behavior. The phase diagram, the relation between the exchange chemical potential and the composition, and the intermolecular pair correlation functions for symmetric blends of linear chains, blends of cyclic polymers, blends with an asymmetry in cohesive energies, blends with different chain lengths, blends with distinct monomer shapes, and blends with a stiffness disparity between the components are discussed. For strictly symmetric blends the Flory‐Huggins theory becomes quantitatively correct in the long chain length limit, when the χ parameter is identified via the intermolecular pair correlation function. For small chain lengths composition fluctuations are important. They manifest themselves in 3D Ising behavior at the critical point and an upward parabolic curvature of the χ parameter from small‐angle neutron scattering close to the critical point. The ratio between the mean field estimate and the true critical temperature decreases like √χ/(ρb³) for long chain lengths. The chain conformations in the minority phase of a symmetric blend shrink as to reduce the number of energeticaly unfavorable interactions. Scaling arguments, detailed self‐consistent field calculations and Monte Carlo simulations of chains with up to 512 effective segments agree that the conformational changes decrease around the critical point like 1/√N. Other mechanisms for a composition dependence of the single chain conformations in asymmetric blends are discussed. If the constituents of the blends have non‐additive monomer shapes, one has a large positive chain‐length‐independent entropic contribution to the χ parameter. In this case the blend phase separates upon heating at a lower critical solution temperature. Upon increasing the chain length the critical temperature approaches a finite value from above. For blends with a stiffness disparity an entropic contribution of the χ parameter of the order 10^–3 is measured with high accuracy. Also the enthalpic contribution increases, because a back folding of the stiffer component is suppressed and the stiffer chains possess more intermolecular contacts. Two aspects of the single chain dynamics in blends are discussed: (a) The dynamics of short non‐entangled chains in a binary blend are studied via dynamic Monte Carlo simulations. There is hardly any coupling between the chain dynamics and the thermodynamic state of the mixture. Above the critical temperatures both the translational diffusion and the relaxation of the chain conformations are independent of the temperature. (b) Irreversible reactions of a small fraction of reactive polymers at a strongly segregated interface in a symmetric binary polymer blend are investigated. End‐functionalized homopolymers of different species react at the interface instantaneously and irreversibly to form diblock copolymers. The initial reaction rate for small reactant concentrations is time dependent and larger than expected from theory. At later times there is a depletion of the reactive chains at the interface and the reaction is determined by the flux of the chains to the interface. Pertinent off‐lattice simulations and analytical theories are briefly discussed.     

Signal transduction in a coupled hormone system: selective explicit internal signal stochastic resonance and its control

Cooperative interactions of signal transduction and environmental noise are investigated with a coupled hormone system, in which selective explicit internal signal stochastic resonance (EISSR) is observed. More specifically, the large peak of a period-2 oscillation (i.e., a strong signal) is greatly amplified by the environmental noise while the small peak (i.e., a weak signal) does not exhibit cooperative interactions with noise. The EISSR phenomenon could be controlled by adjusting the frequency or amplitude of an external signal and a critical amplitude for external signal is found. Significantly, the maximal signal-to-noise ratio increases almost linearly with the increment of control parameter, despite that the magnitude of the large peak is decreased. In addition, the noise does not alter the fundamental frequencies of the strong signal and the weak signal, which implicates that the system can keep its intrinsic oscillatory state and resist the effect of environmental fluctuations.     

The properties of a single polymer chain in solvent confined in a slit: A molecular dynamics simulation

A single polymer chain in solvent confined in a slit formed by two parallel plates is studied by using molecular dynamics simulation method. The square radii of gyration and diffusion behaviors of polymers are greatly affected by the distance between the two plates, but they do not follow the same way. The chain size decays drastically with increasing h (h is the distance between two plates), until a basin occurs, and a universal h/〈R _g〉₀ dependence for polymer chains with different degrees of polymerization can be obtained. While, for the chain’s diffusion coefficient, it decays monotonously and there is no such basin-like behavior. Furthermore, we studied the radial distribution function of confined polymer chains to explain the reason why there is a difference for the decay behaviors between dynamic properties and static properties. Besides, we also give the degree of confinement dependence of the static scaling exponent for a single polymer chain. Our work provides an efficient way to estimate the dynamics and static properties of confined polymer chains, and also helps us to understand the behavior of polymer chains under confinement.     

How to properly compute the resonance energy within the ab initio valence bond theory: a response to the ZHJVL paper

Valence bond (VB) theory describes a conjugated system by a set of electron-localized Lewis resonance structures. VB assumes that the magnitude of the intramolecular electron delocalization can be measured in terms of a resonance energy (RE), taken to be the energy difference between the real conjugated system (delocalized) and the corresponding most stable virtual resonance structure (localized). Proper RE estimates within VB theory require both delocalized and localized states to be defined at the same theoretical level, and the definition of the localized state to closely correspond to the intuitive picture of the corresponding VB structure. In contrast, the VB-delocal and VB-local computational approaches adopted by Zielinski, et al. [preceding paper in this issue] used definitions for either the delocalized or the localized states which, in our view, depart from the intuitive chemical picture. Consequently, their RE estimates are much lower than seemingly appropriate experimental evaluations with which they strongly disagree. Very large basis sets approaching completeness blur the boundaries among resonance structures and result in “basis set artifact” problems within any variant of VB theory. However, block-localized wavefunction (BLW) computations with mid-size basis sets not only exhibit insignificant variations with theoretical levels, but the resulting RE estimates also are justified by comparisons with those employing experimental data and MO computations. We stress that RE differs from the aromatic stabilization energy (ASE). The RE measures the total stabilization of an aromatic system, whereas ASE measures only the part of the RE that exceeds that of appropriate conjugated (but non-aromatic) reference molecules.     

Communication: Quantum polarized fluctuating charge model: a practical method to include ligand polarizability in biomolecular simulations

We present a simple and practical method to include ligand electronic polarization in molecular dynamics (MD) simulation of biomolecular systems. The method involves periodically spawning quantum mechanical (QM) electrostatic potential (ESP) calculations on an extra set of computer processors using molecular coordinate snapshots from a running parallel MD simulation. The QM ESPs are evaluated for the small-molecule ligand in the presence of the electric field induced by the protein, solvent, and ion charges within the MD snapshot. Partial charges on ligand atom centers are fit through the multi-conformer restrained electrostatic potential (RESP) fit method on several successive ESPs. The RESP method was selected since it produces charges consistent with the AMBER/GAFF force-field used in the simulations. The updated charges are introduced back into the running simulation when the next snapshot is saved. The result is a simulation whose ligand partial charges continuously respond in real-time to the short-term mean electrostatic field of the evolving environment without incurring additional wall-clock time. We show that (1) by incorporating the cost of polarization back into the potential energy of the MD simulation, the algorithm conserves energy when run in the microcanonical ensemble and (2) the mean solvation free energies for 15 neutral amino acid side chains calculated with the quantum polarized fluctuating charge method and thermodynamic integration agree better with experiment relative to the Amber fixed charge force-field.     

CC-1: How to Produce a CC — An Example,with Remarks Between the Lines

JPC – Journal of Planar Chromatography – Modern TLC -     

Preparation of refractive index matching polymer film alternative to oil for use in a portable surface-plasmon resonance phenomenon-based chemical sensor method

In order to simplify the procedure for assembling a surface-plasmon resonance (SPR) sensor, a refractive index matching polymer film was prepared as an alternative to the conventionally used matching oil. The refractive index matching polymer film, the refractive index of which was nearly equal to the prism and sensor chip material (a cover glass) of the SPR sensor, was prepared by casting a tetrahydrofuran solution of poly (vinyl chloride) (PVC) containing equal weights of dioctyl phthalate and tricresyl phosphate. The refractive index matching polymer film was found to have a refractive index of 1.516, which is identical to that of the prism and the cover glass used for the present SPR sensor. The utility of the matching polymer film for the SPR sensor was confirmed by the detection of anti-human albumin, based on an antigen-antibody reaction.     

Radiation-induced defects in sucrose single crystals, revisited: a combined electron magnetic resonance and density functional theory study

The results are presented of an electron magnetic resonance analysis at 110 K of radiation-induced defects in sucrose single crystals X-irradiated at room temperature, yielding a total of nine (1)H hyperfine coupling tensors assigned to three different radical species. Comparisons are made with results previously reported in the literature. By means of electron paramagnetic resonance and electron nuclear double resonance temperature variation scans, most of the discrepancies between the present 110 K study and a previous 295 K study by Sagstuen and co-workers are shown to originate from the temperature dependence of proton relaxation times and hyperfine coupling constants. Finally, radical models previously suggested in the literature are convincingly refuted by means of quantum chemical density functional theory calculations.     

An alkaline polymer electrochemical interface: a breakthrough in application of alkaline anion-exchange membranes in fuel cells

A novel alkaline polymer has been developed as an interfacial material for use in the preparation of metal-cation-free alkaline membrane electrode assemblies (MEAs) for all-solid-state alkaline fuel cells (AFCs) with long-term performance stability.     

Peptide dissociation in solution or bound to a polymer: comparative solvent effect

Dissociation of peptide when in solution or attached to a polymer was investigated. Magnified solvation of peptide-resins occurred in solvent with similar polarity. Conversely the solubilization of peptides was not usually directly related to the medium polarity. The greater the difference between acidity and basicity of solvent and its potential to form van der Waals interaction, the stronger its solubilization strength. Solvents with similar electrophilicity and nucleophilicity usually did not solvate aggregated peptide-resins nor dissolve peptides. The peptide solubilization in water-containing mixed solvents depended on combination of acidity/basicity of both components. Some criteria for choosing suitable solvents for peptide-resin solvation or peptide solubilization could be advanced.     

How long a C–C bond can be? An example of extraordinary long C–C single bond in 1,2-diarylamino-o-carborane

The longest C-C single bond of 1.990(4) Å known thus far is observed in the single crystal X-ray structure of 1,2-(NHMes)₂-o-carborane (Mes = 2,4,6-trimethylphenyl), which is readily synthesized via a one-pot process.