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1.
Quantum chemical [MP2(FULL)/6-311++G-(d,p)] calculations are done on the binding of hydrated Li(+), Na(+), K(+), Mg(2+), Cu(+), and Zn(2+) metal ions with biologically relevant heteroaromatics such as imidazole and methylimidazole. The computed interaction energies are found to be in good agreement with the available experimental data. The effect of hydration on hydrogen bonding has been studied in detail and it shows that the hydrogen bond strength between H(2)O···H-N(1) substantially increases in the presence of metal ions. The present study quantifies the cooperativity between M···imidazole (M = Li(+), Na(+), K(+), Mg(2+), Cu(+), and Zn(2+)) and N(1)-H···OH(2) interactions. Topological atoms in molecules (AIM) analysis and charge analysis support the variation in hydrogen-bonding strength and the variation in M···imidazole binding strength. Effect of hydration on N(1)-H stretching frequency is studied, and it shows a clear shift in the stretching frequency after sequential hydration of metal ion as well as the N(1) of imidazole. The present study provides a detailed account on the biologically important M-histidine motif interaction with metal ions, where histidine is modeled by imidazole and methylimidazole.  相似文献   

2.
Cluster size effects in core excitons below the N 1s ionization energy of nitrogen clusters are reported in the energy regime 405-410 eV. These results are compared to the molecular Rydberg states as well as the corresponding bulk excitons of condensed nitrogen. The experimental results are assigned using ab initio calculations. It is found that the lowest excitons (N 1s-->3ssigma and N 1s-->3ppi) are blueshifted relative to the molecular Rydberg transitions, whereas others (N 1s-->3dpi and N 1s-->4ppi) show a redshift. Results from ab initio calculations on (N(2))(13) clearly indicate that the molecular orientation within a cluster is critical to the spectral shift, where bulk sites as well as inner- and outer-surface sites are characterized by different inner-shell absorption energies. These results are compared to the experimental spectra as well as previous work on site-selectively excited atomic van der Waals clusters, providing an improved spectral assignment of core exciton states in weakly bound molecular clusters and the corresponding condensed phase.  相似文献   

3.
The infrared (IR) spectra of the supersonic-jet cooled 9H- and 7H-tautomers of 2-aminopurine (2AP) and of the 9H-2-aminopurine·H(2)O monohydrate clusters have been measured by mass- and species-selective IR-UV double resonance spectroscopy in the 3200-3900 cm(-1) region, covering the N-H and O-H stretching vibrations. The spectra are complemented by density functional (B3LYP and PW91) and by second-order M?ller-Plesset (MP2) calculations of the electronic energies and vibrational frequenciesof the respective 2AP tautomers and clusters. The 9H- and 7H-2-aminopurine tautomers were definitively identified by the shifts of their NH and NH(2) symmetric and asymmetric stretching frequencies and by comparison to the B3LYP/TZVP calculated IR spectra. The H-bond topologies of the two previously observed 9H-2-aminopurine·H(2)O isomers (Sinha. R. K.; et al. J. Phys. Chem. A2011, 115, 6208) are definitively identified as the "sugar-edge" isomer A and the "trans-amino-bound" isomer B by comparing their IR spectra to the calculated frequencies and IR intensities of the cluster isomers A, B, C, and D, as well as to the IR spectrum of 9H-2AP. The sugar-edge isomer A involves N9-H···OH(2) and HOH···N3 hydrogen bonds and is predicted to be the most stable form. The amino-bound isomer B involves NH(2)···OH(2) and HOH···N1 hydrogen bonds and is calculated to lie 2.5 kJ/mol above isomer A. The H-bond topology of the "cis-amino-bound" isomer C is symmetrically related to isomer B, with a hydrogen bond to the N3 of the pyrimidine group. However, it is calculated to lie 7 kJ/mol above isomer A and indeed is not observed in the supersonic jet. Isomer D involves a single H-bond to the N7 position, is predicted to be 14 kJ/mol above A and is therefore not observed.  相似文献   

4.
We have employed (2 + 1) resonance enhanced multiphoton ionization spectroscopy to investigate the 3d and 4s Rydberg states of the NO molecule when bound to the surface of Rg(x) clusters (Rg = rare gas). We observe that the spectra of the NO-Ar(x) species converge in appearance as x increases, and this is discussed in terms of two Rg atoms interacting with the NO+ core, with other Rg atoms being "outside" the Rydberg orbital. We show that the interaction of each of the Rg atoms with the NO is essentially independent for the NO-Rg2 complexes: both by comparing our spectra for Rydberg states of NO-Rg and NO-Rg2, and from the results of ab initio calculations on NO+ - Rg and NO+ - Rg2. In addition, we discuss the disappearance of some electronic bands upon complexation in terms of Franck-Condon factors that are very sensitive to the angular coordinate. We relate our results to those of the bulk by comparing to the previously reported electronic spectroscopy of NO in both Rg matrices and He nanodroplets.  相似文献   

5.
In molecular beams, the tertiary amine N,N-dimethylisopropyl amine can form molecular clusters that are evident in photoelectron and mass spectra obtained upon resonant multiphoton ionization via the 3p and 3s Rydberg states. By delaying the ionization pulse from the excitation pulse we follow, in time, the ultrafast energy relaxation dynamics of the 3p to 3s internal conversion and the ensuing cluster evaporation, proton transfer, and structural dynamics. While evaporation of the cluster occurs in the 3s Rydberg state, proton transfer dominates on the ion surface. The mass-spectrum shows protonated species that arise from a proton transfer from the alpha-carbon of the neutral parent molecule to the N-atom of its ionized partner in the dimer. DFT calculations support the proton transfer mechanism between tightly bonded cluster components. The photoelectron spectrum shows broad peaks, ascribed to molecular clusters, which have an instantaneous shift of about 0.5 eV toward lower binding energies. That shift is attributed to the charge redistribution associated with the induced dipoles in surrounding cluster molecules. A time-dependent shift that decreases the Rydberg electron binding energy by a further 0.4 eV arises from the structural reorganization of the cluster solvent molecules as they react to the sudden creation of a charge.  相似文献   

6.
To investigate the factors influencing the formation of intermolecular Au···NC interactions between [Au(CN)(4)](-) units, a series of [cation](n+)[Au(CN)(4)](n) double salts was synthesized, structurally characterized and probed by IR and (15)N{(1)H} CP-MAS NMR spectroscopy. Thus, [(n)Bu(4)N][Au(CN)(4)], [AsPh(4)][Au(CN)(4)], [N(PPh(3))(2)][Au(CN)(4)], [Co(1,10-phenanthroline)(3)][Au(CN)(4)](2), and [Mn(2,2';6',2'-terpyridine)(2)][Au(CN)(4)](2) show [Au(CN)(4)](-) anions that are well-separated from one another; no Au-Au or Au···NC interactions are present. trans-[Co(1,2-diaminoethane)(2)Cl(2)][Au(CN)(4)] forms a supramolecular structure, where trans-[Co(en)(2)Cl(2)](+) and [Au(CN)(4)](-) ions are found in separate layers connected by Au-CN···H-N hydrogen-bonding; weak Au···NC coordinate bonds complete octahedral Au(III) centers, and support a 2-D (4,4) network motif of [Au(CN)(4)](-)-units. A similar structure-type is formed by [Co(NH(3))(6)][Au(CN)(4)](3)·(H(2)O)(4). In [Ni(1,2-diaminoethane)(3)][Au(CN)(4)](2), intermolecular Au···NC interactions facilitate formation of 1-D chains of [Au(CN)(4)](-) anions in the supramolecular structure, which are separated from one another by [Ni(en)(3)](2+) cations. In [1,4-diazabicyclo[2.2.2]octane-H][Au(CN)(4)], the monoprotonated amine cation forms a hydrogen-bond to the [Au(CN)(4)](-) unit on one side, while coordinating to the axial sites of the gold(III) center through the unprotonated amine on the other, thereby generating a 2-D (4,4) net of cations and anions; an additional, uncoordinated [Au(CN)(4)](-)-unit lies in the central space of each grid. This body of structural data indicates that cations with hydrogen-bonding groups can induce intermolecular Au···NC interactions, while the cationic charge, shape, size, and aromaticity have little effect. While the ν(CN) values are poor indicators of the presence or absence of N-cyano bridging between [Au(CN)(4)](-)-units (partly because of the very low intensity of the observed bands), (15)N{(1)H} CP-MAS NMR reveals well-defined, ordered cyanide groups in the six diamagnetic compounds with chemical shifts between 250 and 275 ppm; the resonances between 260 and 275 ppm can be assigned to C-bound terminal ligands, while those subject to CN···H-N bonding resonate lower, around 250-257 ppm. The (15)N chemical shift also correlates with the intermolecular Au···N distances: the shortest Au-N distances also shift the (15)N peak to lower frequency. This provides a real, spectroscopically measurable electronic effect associated with the crystallographic observation of intermolecular Au···NC interactions, thereby lending support for their viability.  相似文献   

7.
We present Auger spectroscopy studies of large krypton clusters excited by soft x-ray photons with energies on and just above the 3d(52) ionization threshold. The deexcitation spectra contain new features as compared to the spectra measured both below and far above threshold. Possible origins of these extra features, which stay at constant kinetic energies, are discussed: (1) normal Auger process with a postcollision interaction induced energy shift, (2) recapture of photoelectrons into high Rydberg orbitals after Auger decay, and (3) excitation into the conduction band (or "internal" ionization) followed by Auger decay. The first two schemes are ruled out, hence internal ionization remains the most probable explanation.  相似文献   

8.
MRCI results are reported for the vertical excitation energies (VEE) and oscillator strengths f of doublet states of OClO up to 11 eV, including 3b(1) → 4s, 4p, 3d, 5s, 5p, 4d, and most 1a(2), 8a(1), 5b(2) → 4s and 4p Rydberg states. The lowest Rydberg states 3b(1) → 4s and 3b(1) → 4p(x) have mixed valence-Rydberg character. The observed spectral bands were reassigned to include valence states which have generally higher oscillator strengths. The well-known valence state 1(2)A(2) has a VEE of 3.63 eV, and a relatively high f of 0.042. Overall, the calculated oscillator strengths are in good agreement with measured values. The lowest quartet state, 1(4)B(2), lies at 6.95 eV. Quartet Rydberg states start with 1a(2) → 4s at 9.28 eV. According to calculated vertical ionization potentials (VIP) of OClO, the second VIP at 12.59 eV is reassigned from 1(3)B(1) to 1(3)B(2) (ionization from 1a(2), rather than 8a(1)), and the third VIP at 12.63 eV from 1(1)B(1) to 1(3)B(1) (ionization from 8a(1)). Vertical electron detachment energies of OClO(-) have been calculated up to 8.9 eV. There is good agreement with experimental values.  相似文献   

9.
We report a theoretical study of vibronic effects on the 1t(1) → 3s Rydberg excitation in CF(4) induced by electron impact. The generalized oscillator strength for the excitation has been calculated using theoretical wave functions at the equation-of-motion coupled cluster singles and doubles level. In the calculation vibronic effects have been taken into account by evaluating the electronic transition moment along the individual normal coordinates. The present calculation successfully reproduces our recent experimental result [N. Watanabe, D. Suzuki, and M. Takahashi, J. Chem. Phys. 134, 064307 (2011)] over the full momentum transfer region studied. By examining contributions from individual normal modes, the asymmetric stretching mode is found to play a leading role in the 1t(1) → 3s transition at small momentum transfer.  相似文献   

10.
The syntheses are reported for two novel Tb(3+) heterotrimetallic cyanometallates, K(2)[Tb(H(2)O)(4)(Pt(CN)(4))(2)]Au(CN)(2)·2H(2)O (1) and [Tb(C(10)N(2)H(8))(H(2)O)(4)(Pt(CN)(4))(Au(CN)(2))]·1.5C(10)N(2)H(8)·2H(2)O (2) (C(10)N(2)H(8) = 2,2'-bipyridine). Both compounds have been isolated as colorless crystals, and single-crystal X-ray diffraction has been used to investigate their structural features. Crystallographic data (MoKα, λ = 0.71073 ?, T = 290 K): 1, tetragonal, space group P4(2)/nnm, a = 11.9706(2) ?, c = 17.8224(3) ?, V = 2553.85(7) ?(3), Z = 4; 2, triclinic, space group P1, a = 10.0646(2) ?, b = 10.7649(2) ?, c = 17.6655(3) ?, α = 101.410(2)°, β = 92.067(2)°, γ = 91.196(2)°, V = 1874.14(6) ?(3), Z = 2. For the case of 1, the structure contains Au(2)Pt(4) hexameric noble metal clusters, while 2 includes Au(2)Pt(2) tetrameric clusters. The clusters are alike in that they contain Au-Au and Au-Pt, but not Pt-Pt, metallophilic interactions. Also, the discrete clusters are directly coordinated to Tb(3+) and sensitize its emission in both solid-state compounds, 1 and 2. The Photoluminescence (PL) spectra of 1 show broad excitation bands corresponding to donor groups when monitored at the Tb(3+) ion f-f transitions, which is typical of donor/acceptor energy transfer (ET) behavior in the system. The compound also displays a broad emission band at ~445 nm, assignable to a donor metal centered (MC) emission of the Au(2)Pt(4) clusters. The PL properties of 2 show a similar Tb(3+) emission in the visible region and a lack of donor-based emission at room temperature; however, at 77 K a weak, broad emission occurs at 400 nm, indicative of uncoordinated 2,2'-bipyridine, along with strong Tb(3+) transitions. The absolute quantum yield (QY) for the Tb(3+) emission ((5)D(4) → (7)F(J (J = 6-3))) in 1 is 16.3% with a lifetime of 616 μs when excited at 325 nm. In contrast the weak MC emission at 445 nm has a quantum yield of 0.9% with a significantly shorter lifetime of 0.61 μs. For 2 the QY value decreases to 9.3% with a slightly shorter lifetime of 562 μs. The reduced QY in 2 is considered to be a consequence of (1) the slightly increased donor-acceptor excited energy gap relative to the optimal gap suggested for Tb(3+) and (2) Tb(3+) emission quenching via a bpy ligand-to-metal charge transfer (LMCT) excited state.  相似文献   

11.
Water cluster anions, (H(2)O)(N)(-), are examined using mixed quantum/classical molecular dynamics based on a one-electron pseudopotential model that incorporates many-body polarization and predicts vertical electron detachment energies (VDEs) with an accuracy of ~0.1 eV. By varying the initial conditions under which the clusters are formed, we are able to identify four distinct isomer types that exhibit different size-dependent VDEs. On the basis of a strong correlation between the electron's radius of gyration and its optical absorption maximum, and extrapolating to the bulk limit (N → ∞), our analysis supports the assignment of the "isomer Ib" data series, observed in photoelectron spectra of very cold clusters, as arising from cavity-bound (H(2)O)(N)(-) cluster isomers. The "isomer I" data reported in warmer experiments are assigned to surface-bound isomers in smaller clusters, transitioning to partially embedded isomers in larger clusters. The partially embedded isomers are characterized by a partially formed solvent cavity at the cluster surface, and they are spectroscopically quite similar to internalized cavity isomers. These assignments are consistent with various experimental data, and our theoretical characterization of these isomers sheds new light on a long-standing assignment problem.  相似文献   

12.
Supertetrahedral compounds of chalcogenometalates (T3 cluster compounds) integrated with Ni-bpy (bpy = 2,2'-bipyridine) complex were prepared by a solvothermal technique. The compound [Ni(bpy)(3)](3)[H(4)In(10)S(20)]·bpy·2EG·6H(2)O (Mb-InS-1) (EG = ethylene glycol) consists of discrete T3 clusters of [H(4)In(10)S(20)](6-) with three [Ni(bpy)(3)](2+) cations. The compound [Ni(bpy)(3)](2)[H(2)In(10)S(19)]·bpy·2HEA·2H(2)O (Mb-InS-2) (EA = ethanolamine) is a 1-D polymer, in which zigzag T3 cluster chains are charge balanced by metal-bpy complex cations. The compound [Ni(bpy)(3)](7)[H(4)In(40)S(74)]·7Hbpy·3HEA·8H(2)O (Mb-InS-3) is a 2-D T3 polymer with cation layers of [Ni(bpy)(3)](2+). Integrating M-bpy complex cations into chalcogenido structures has been made with the aim of improving the photoabsorption of the materials. The electronic spectra showed the new bands of cation-anion charge-transfer (CACT) that is mainly caused by the S···H-C(py) contacts between the InS T3 supertetrahedral clusters and the [Ni(bpy)(3)](2+) cations.  相似文献   

13.
In recent experimental studies of infrared (IR) spectra of hydrated phenol clusters, the Mikami and Ebata group at Tohoku University attributed apparently two very different spectra to PhOH(H2O)4. The first spectrum has a wide transparent region between 3500 and 3700 cm-1, which they named a window region. The second spectrum has several absorption bands in this window region. Our previous study revealed that the first spectrum was assigned to the isomers which have a single-ring structure of a hydrogen-bonding network of OH's of phenol and waters. The experimentalists suggested that the second spectrum might be identified to a proton-transferred phenol(SINGLEBOND)water cluster. In the present article, the geometrical structures of proton-transferred hydrated phenol clusters were determined with the ab initio molecular orbital method and their IR spectra were calculated. The proton-transferred phenol(SINGLEBOND)water cluster is at a stable local minimum, but the energy is much higher than that of the most stable nontransferred cluster. The calculated IR spectrum has a still wider window region and is far different from the experimental spectrum of the second type. © 1996 John Wiley & Sons, Inc.  相似文献   

14.
The decomposition mechanisms of azoisobutyronitrile were systematically investigated. Density function theory B3LYP/6-311G*, B3LYP/6-311+G* and BHandH/6-31+G** methods were employed to optimize the geometry parameters of the reactants, transition states, possible intermediates and products based on the detailed potential energy surfaces scanned with AM1. The reaction mechanisms were also analyzed theoretically. The results indicate that the decomposition of azoisobutyronitrile is a two-bond (three body) synchronouscleavage process in the ground state (CH3)2CNC-N=N-CCN(CH3)2→2(CH3)2CNC·+N2; and is a twobond asynchronous cleavage process while in the triple state (CH3)2CNCN=N-CCN(CH3)2→(CH3)2CNCN=N· · ·CCN(CH3)2→2(CH3)2CNC·+N2. The calculations rationalize and verify all experimental facts.  相似文献   

15.
《Chemical physics》1987,111(1):97-103
The vacuum ultraviolet spectra of two tetrasubstituted tin derivatives (SnCl4 and Sn(CH3)4) have been recorded down to 110 nm. Ab initio CI calculations led to a satisfying interpretation of the electron and photoelectron spectra. The first two bands of SnCl4, at 201 and 163 nm, are attributed to (n → σ and σ → σ) valence transition, while the first band of Sn(CH3)4, at 186 nm, presents a pure Rydberg character, as in the case of SnH4. The rest of the spectrum can be attributed to Rydberg transitions mixed with valence states to varying extents.  相似文献   

16.
The electronic spectrum of cyclopropene has been studied using multiconfigurational second-order perturbation theory (CASPT2) with extended ANO-type basis sets. The calculation comprises two valence states and the 3s, 3p, 3d members of the Rydberg series converging to the π and σ ionization limits. A total of twenty singlet and twenty triplet excited states have been analyzed. The results confirm the valence nature of the lowest energy singlet-singlet band and yield a conclusive assignment: the first dipole-allowed transition in cyclcopropene is due to absorption to a (σ → π*) state. The (π → π*) (V) state is interleaved among a number of Rydberg states in the most intense band of the system. The remaining spectral bands are due to Rydberg transitions of higher energy. The two lowest singlet-triplet transitions involve the same valence states. The results are in agreement with available experimental data and provide a number of new assignments of the experimental spectra.  相似文献   

17.
We report the synthesis of the complex (N,N'-tmeda)Zn(SeSiMe3)2 (1), whose pendant trimethylsilyl moieties result in a powerful reagent for the generation of ternary MM'E materials. Reaction of 1 with (PnPr3)2Cd(OAc)2 and PhSeSiMe3 has led to the formation of the ternary ZnCdSe nanocluster [(N,N-tmeda)5Zn5Cd11Se13(SePh)6(thf)2] (2). The cluster consists of a CdSe core capped by ZnSe2 units, and represents the first example of a structurally characterized II-II'-VI nanocluster. Utilization of an analogous (trimethylsilyl)tellurolate precursor leads to the formation of [(N,N-tmeda)5Zn5Cd11Te13(TePh)6(thf)] (3). The absorption spectra of 2 and 3 exhibit bands that have been assigned to "excitonic" transitions. The clusters are also luminescent at room temperature, exhibiting "band-edge" luminescence both in solution and in the solid state.  相似文献   

18.
The reaction of AgNO3 , 4,4′-bipyridine (bpy) and 2,2′-bipyridine-3,3′-dicarboxylic acid (H2bpdc)/2,2′-biquinoline-4,4′-dicarboxylic acid (H2bqdc)/1,3-benzenedicarboxylic acid (H2bdc) gave rise to block-like crystals of [Ag4(bpy)2(bpdc)2]·13H2O(1), [Ag2(bpy)(bqdc)(H2O)]·4.5H2O(2) and [Ag2(bpy)2(H2O)2](bdc)·3H2O(3) by slow evaporation. All the three complexes contain sandwich-like crystal structures, in which anionic sheets built up from different anions (bpdc2- , bqdc2- and bdc2- ) and lattice water molecules via rich hydrogen-bonding interactions are inserted between the cationic silver complex layers, and the abundant Ag···Ag, Ag···N and π-π stacking interactions further strengthen the 3D frameworks. The lattice water molecules are situated among the framework of crystal structure and stabilized by rich hydrogen-bonding interactions, and lattice water molecules may play a role in the orientation of organic anions in the crystal packing. Additionally, the thermal properties of 1, 2 and 3 were also discussed in detail.  相似文献   

19.
Thirteen specific infrared bands in the 2350 cm(-1) region are assigned to carbon dioxide clusters, (CO(2))(N), with N = 6, 7, 9, 10, 11, 12 and 13. The spectra are observed in direct absorption using a tuneable infrared laser to probe a pulsed supersonic jet expansion of a dilute mixture of CO(2) in He carrier gas. Assignments are aided by cluster structure calculations made using two reliable CO(2) intermolecular potential functions. For (CO(2))(6), two highly symmetric isomers are observed, one with S(6) symmetry (probably the more stable form), and the other with S(4) symmetry. (CO(2))(13) is also symmetric (S(6)), but the remaining clusters are asymmetric tops with no symmetry elements. The observed rotational constants tend to be slightly (≈2%) smaller than those from the predicted structures. The bands have increasing vibrational blueshifts with increasing cluster size, similar to those predicted by the resonant dipole-dipole interaction model but significantly larger in magnitude.  相似文献   

20.
The [Ni(Im)(2)(L-tyr)(2)]·4H(2)O (1) complex was obtained in crystalline form as a product of interaction of L-tyrosine sodium salt, imidazole, and NiSO(4). The X-ray structure was determined, and the spectral (IR, FIR, NIR-vis-UV, HF EPR) and magnetic properties were studied. The Ni(2+) ion is hexacoordinated by the N and O atoms from two L-tyrosine molecules and by two N atoms of imidazole, resulting in a slightly distorted octahedral [NiN(2)N(2)'O(2)] geometry with a tetragonality parameter T = 0.995. The bands observed in the electronic spectra were ascribed to the six spin-allowed electronic transitions (3)B(1g) → (3)E(g) and (3)B(2g), (3)B(1g) → (3)A(2g) and (3)E(g), and (3)B(1g) → (3)A(2g) and (3)E(g). The spin Hamiltonian parameters g, D, and E, which were determined from high-field HF EPR spectra, excellently reproduced the magnetic properties of the complex. Calculation of the zero-field splitting in the S = 1 state of nickel(II) using DFT and UHF was attempted. The biological activity of the complexes has been tested for antifungal and antibacterial effects against Aspergillus flavus, Fusarium solani, Penicillium verrucosu, Bacillus subtilis, Serratia marcescens, Pseudomonas fluorescens, and Escherichia coli.  相似文献   

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