Electronic spectroscopy and photoisomerization of trans-urocanic acid in a supersonic jet.

trans-Urocanic acid (trans-UA), a component of the epidermal layer of skin, exhibits wavelength-dependent photochemistry. The quantum efficiency of isomerization to cis-UA is greatest when the molecule is excited on the long wavelength tail of its absorption profile in solution (300-320 nm). However, exciting the molecule where it absorbs UV light most efficiently (260-285 nm) causes almost no isomerization. We have used fluorescence excitation and dispersed emission methods in a supersonic jet to investigate the electronic states involved in this complex and interesting photochemistry. Three distinct regions are present in the excitation spectrum. Region I, which is below the isomerization barrier, contains sharp, well-resolved peaks that upon excitation emit from the S(1) state of trans-UA. Region II exhibits peaks that increase in broadness and decrease in intensity with increasing excitation energy. Upon excitation these peaks produce dual emission from the S(1) states of both trans- and cis-UA. The trans to cis isomerization barrier is estimated to be 1400 cm(-1). Region III exhibits excitation to the S(2) electronic state and has a broad structure that spans 3000 cm(-1) and occurs 4000 cm(-1) above S(1). S(2) excitation results in essentially no trans to cis isomerization.     

Rotational isomerism of acetic acid isolated in rare-gas matrices: Effect of medium and isotopic substitution on IR-induced isomerization quantum yield and cis-->trans tunneling rate

Rotational isomerization of acetic acid (CH3COOH) is studied in Ar, Kr, and Xe matrices. The light-induced trans-->cis reaction is promoted using resonant excitation of a number of modes in the 3500-7000 cm(-1) region, and the quantum yields for this process are measured for various acetic acid isotopologues and matrix materials. For excitation of acetic acid at energies above the predicted isomerization energy barrier (> or =4400 cm(-1)), the measured quantum yields are in average 2%-3%, and this is one order of magnitude smaller than the corresponding values known for formic acid (HCOOH). This difference is interpreted in terms of the presence of the methyl group in acetic acid, which enhances energy relaxation channels competing with the rotational isomerization. This picture is supported by the observed large effect of deuteration of the methyl group on the photoisomerization quantum yield. The trans-->cis reaction quantum yields are found to be similar for Ar, Kr, and Xe matrices, suggesting similar energy relaxation processes for this molecule in the various matrices. The IR-induced cis-->trans process, studied for acetic acid deuterated in the hydroxyl group, shows reliably larger quantum yields as compared with the trans-->cis process. For pumping of acetic acid at energies below the predicted isomerization barrier, the trans-->cis reaction quantum yields decrease strongly when the photon energy decreases, and tunneling is the most probable mechanism for this process. For the cis-->trans dark reaction, the observed temperature and medium effects indicate the participation of the lattice phonons in the tunneling-induced process.     

Electron correlation effects on the femtosecond dephasing dynamics of E22 excitons in (6,5) carbon nanotubes

Highly nonlinear pump fluence dependence was observed in the ultrafast one-color pump-probe responses excited by 38 fs pulses resonant with the E(22) transition in a room-temperature solution of (6,5) carbon nanotubes. The differential probe transmission (ΔT/T) at the peak of the pump-probe response (τ = 20 fs) was measured for pump fluences from ～10(13) to 10(17) photons/pulse cm(2). The onset of saturation is observed at ～2 × 10(15) photons/pulse cm(2) (～8 × 10(5) excitons/cm). At pump fluences >4 × 10(16) photons/pulse cm(2) (～1.6 × 10(6) excitons/cm), ΔT/T decreases as the pump fluence increases. Analogous signal saturation behavior was observed for all measured probe delays. Despite the high exciton density at saturation, no change in the E(22) population decay rate was observed at short times (<300 fs). The pump probe signal was modeled by a third-order perturbation theory treatment that includes the effects of inhomogeneous broadening. The observed ΔT/T signal is well-fit by a pump-fluence-dependent dephasing rate linearly dependent on the number of excitons created by the pump pulse. Therefore, the observed nonlinear pump intensity dependence is attributed to the effects of quasi-elastic exciton-exciton interactions on the dephasing rates of single carbon nanotubes. The low fluence total dephasing time is 36 fs, corresponding to a homogeneous width of 36 meV (290 cm(-1)), and the derived E(22) inhomogeneous width is 68 meV (545 cm(-1)). These results are contrasted with photon-echo-derived parameters for the E(11) transition.     

Overview of some quantum effects in chemistry

This article is a brief tutorial dealing with the conceptual aspects of (i) excitation transfer in molecular assemblies, such as occurs in the early steps of photosynthesis, (ii) radiationless transitions, which are ubiquitous participants in the light induced isomerization reactions that support vision and (iii) active control of product selection in a chemical reaction. All of these processes exhibit explicit quantum effects that arise from competition between coherent and incoherent evolution of the initial state of the system expressed in the atom and/or electron dynamics. Topic (iii) is associated with how a molecular assembly can be designed to optimize the use of coherent processes to improve efficiency of conversion of the initial excitation to product under the constraint that there are fluctuations in the surrounding medium.     

Optical control of excited-state vibrational coherences of a molecule in solution: The influence of the excitation pulse spectrum and phase in LD690

Spectral and phase shaping of femtosecond laser pulses is used to selectively excite vibrational wave packets on the ground (S0) and excited (S1) electronic states in the laser dye LD690. The transient absorption signals observed following excitation near the peak of the ground-state absorption spectrum are characterized by a dominant 586 cm(-1) vibrational mode. This vibration is assigned to a wave packet on the S0 potential energy surface. When the excitation pulse is tuned to the blue wing of the absorption spectrum, a lower frequency 568 cm(-1) vibration dominates the response. This lower frequency mode is assigned to a vibrational wave packet on the S1 electronic state. The spectrum and phase of the excitation pulse also influence both the dephasing of the vibrational wave packet and the amplitude profiles of the oscillations as a function of probe wavelength. Excitation by blue-tuned, positively chirped pulses slows the apparent dephasing of the vibrational coherences compared with a transform-limited pulse having the same spectrum. Blue-tuned negatively chirped excitation pulses suppress the observation of coherent oscillations in the ground state.     

Near infrared photochemistry of pyruvic acid in aqueous solution

Recent experimental and theoretical results have suggested that organic acids such as pyruvic acid, can be photolyzed in the ground electronic state by the excitation of the OH stretch vibrational overtone. These overtones absorb in the near-infrared and visible regions of the spectrum where the solar photons are plentiful and could provide a reaction pathway for the organic acids and alcohols that are abundant in the earth's atmosphere. In this paper the overtone initiated photochemistry of aqueous pyruvic acid is investigated by monitoring the evolution of carbon dioxide. In these experiments CO(2) is being produced by excitation in the near-infrared, between 850 nm and ～1150 nm (11,765-8696 cm(-1)), where the second OH vibrational overtone (Δν = 3) of pyruvic acid is expected to absorb. These findings show not only that the overtone initiated photochemical decarboxylation reaction occurs but also that in the aqueous phase it occurs at a lower energy than was predicted for the overtone initiated reaction of pyruvic acid in the gas phase (13,380 cm(-1)). A quantum yield of (3.5 ± 1.0) × 10(-4) is estimated, suggesting that although this process does occur, it does so with a very low efficiency.     

Investigation of the excited-state absorption of a Ru dioxolene complex by the Z-scan technique

We investigated nonlinear absorption of picosecond laser pulses in a Ru complex [{Ru(bipy)2}2L][PF6] using the open-aperture Z-scan technique. Experiments were performed in a spectral region of moderate linear absorption (lambda=532 nm, sigmag=0.65 x 10(-16) cm(-2)). We observed a transition from reverse saturable absorption to saturable absorption when the excitation intensity was higher than 50 GW/cm2. To determine the population level kinetics, a model based on three- and four-level systems was considered, and the rate equations solved taking into account the propagation equation of the laser pulse inside the sample. Fitting of the experimental data allows extraction of the excited-states absorption cross sections and lifetimes.     

Theoretical study of the isomerization mechanism of azobenzene and disubstituted azobenzene derivatives

A series of azobenzenes was studied using ab initio methods to determine the substituent effects on the isomerization pathways. Energy barriers were determined from three-dimensional potential energy surfaces of the ground and electronically excited states. In the ground state (S(0)), the inversion pathway was found to be preferred. Our results show that electron donating substituents increase the isomerization barrier along the inversion pathway, whereas electron withdrawing substituents decrease it. The inversion pathway of the first excited state (S(1)) showed trans --> cis barriers with no curve crossing between S(0) and S(1). In contrast, a conical intersection was found between the ground and first excited states along the rotation pathway for each of the azobenzenes studied. No barriers were found in this pathway, and we therefore postulate that after n --> pi (S(1) <-- S(0)) excitation, the rotation mechanism dominates. Upon pi --> pi (S(2) <-- S(0)) excitation, there may be sufficient energy to open an additional pathway (concerted-inversion) as proposed by Diau. Our potential energy surface explains the experimentally observed difference in trans-to-cis quantum yields between S(1) and S(2) excitations. The concerted inversion channel is not available to the remaining azobenzenes, and so they must employ the rotation pathway for both n --> pi and pi --> pi excitations.     

The role of the beta-ionone ring in the photochemical reaction of rhodopsin

Time-dependent density functional theory (TDDFT) calculations on the photoabsorption process of the 11-cis retinal protonated Schiff base (PSB) chromophore show that the Franck-Condon relaxation of the first excited state of the chromophore involves a torsional twist motion of the beta-ionone ring relative to the conjugated retinyl chain. For the ground state, the beta-ionone ring and the retinyl chain of the free retinal PSB chromophore form a -40 degrees dihedral angle as compared to -94 degrees for the first excited state. The double bonds of the retinal are shorter for the fully optimized structure of the excited state than for the ground state suggesting a higher cis-trans isomerization barrier for the excited state than for the ground state. According to the present TDDFT calculations, the excitation of the retinal PSB chromophore does not primarily lead to a reaction along the cis-trans torsional coordinate at the C11-C12 bond. The activation of the isomerization center seems to occur at a later stage of the photo reaction. The results obtained at the TDDFT level are supported by second-order M?ller-Plesset (MP2) and approximate singles and doubles-coupled cluster (CC2) calculations on retinal chromophore models; the MP2 and CC2 calculations yield for them qualitatively the same ground state and excited-state structures as obtained in the density functional theory and TDDFT calculations.     

Cis-trans isomerization in the S1 state of acetylene: identification of cis-well vibrational levels

A systematic analysis of the S(1)-trans (A?(1)A(u)) state of acetylene, using IR-UV double resonance along with one-photon fluorescence excitation spectra, has allowed assignment of at least part of every single vibrational state or polyad up to a vibrational energy of 4200 cm(-1). Four observed vibrational levels remain unassigned, for which no place can be found in the level structure of the trans-well. The most prominent of these lies at 46?175 cm(-1). Its (13)C isotope shift, exceptionally long radiative lifetime, unexpected rotational selection rules, and lack of significant Zeeman effect, combined with the fact that no other singlet electronic states are expected at this energy, indicate that it is a vibrational level of the S(1)-cis isomer (A?(1)A(2)). Guided by ab initio calculations [J. H. Baraban, A. R. Beck, A. H. Steeves, J. F. Stanton, and R. W. Field, J. Chem. Phys. 134, 244311 (2011)] of the cis-well vibrational frequencies, the vibrational assignments of these four levels can be established from their vibrational symmetries together with the (13)C isotope shift of the 46?175 cm(-1) level (assigned here as cis-3(1)6(1)). The S(1)-cis zero-point level is deduced to lie near 44?900 cm(-1), and the ν(6) vibrational frequency of the S(1)-cis well is found to be roughly 565 cm(-1); these values are in remarkably good agreement with the results of recent ab initio calculations. The 46?175 cm(-1) vibrational level is found to have a 3.9 cm(-1) staggering of its K-rotational structure as a result of quantum mechanical tunneling through the isomerization barrier. Such tunneling does not give rise to ammonia-type inversion doubling, because the cis and trans isomers are not equivalent; instead the odd-K rotational levels of a given vibrational level are systematically shifted relative to the even-K rotational levels, leading to a staggering of the K-structure. These various observations represent the first definite assignment of an isomer of acetylene that was previously thought to be unobservable, as well as the first high resolution spectroscopic results describing cis-trans isomerization.     

Excited-state structure and dynamics of cis- and trans-Azobenzene from resonance Raman intensity analysis

Resonance Raman intensity analysis was used to investigate the initial excited-state nuclear dynamics of cis- and trans-azobenzene following S1 (npi*) excitation, and fluorescence quantum yield measurements were used to estimate the excited-state lifetimes. trans-Azobenzene exhibits the strongest Raman intensities in its skeletal stretching and bending modes, while torsional motions dominate the nuclear relaxation of cis-azobenzene as indicated by intense Raman lines at 275, 542, 594, and 778 cm(-1). The very weak fluorescence quantum yield for cis-azobenzene is consistent with its approximately 100 fs electronic lifetime while trans-azobenzene, with a fluorescence quantum yield of 1.1 x 10(-5), has an estimated S1 lifetime of approximately 3 ps. The absorption and Raman cross-sections of both isomers were modeled to produce a harmonic displaced excited-state potential energy surface model revealing the initial nuclear motions on the reactive surface, as well as values for the homogeneous and inhomogeneous linewidths. For cis-azobenzene, this modeling predicts slopes on the S1 potential energy surface that when extrapolated to the position of the harmonic minimum give excited-state changes of approximately 6-20 degrees in the CNNC torsion angle and a < or =3 degrees change in the CNN bending angle. The relatively large excited-state displacements along these torsional degrees of freedom provide the driving force for ultrafast isomerization. In contrast, the excited-state geometry changes of trans-azobenzene are primarily focused on the CNN bend and CN and NN stretches. These results support the idea that cis-azobenzene isomerizes rapidly via rotation about the NN bond, while isomerization proceeds via inversion for trans-azobenzene.     

Time-resolved IR spectroscopy of N-methylthioacetamide: trans-->cis isomerization upon n-pi and pi-pi excitation and cis-->trans photoreaction

Time-resolved infrared spectroscopy was used to study the photoisomerization of N-Methylthioacetamide (NMTAA) in D2O in both the cis-->trans and the trans-->cis direction upon selective excitation of the n-pi (S1) and pi-pi (S2) electronic transitions. While isomerization and the return to the ground state takes place on two distinct time scales (cis isomerization is 30-40%, independent of the electronic state excited, while the cis-->trans isomerization proceeds with a 60-70% quantum efficiency. These results support a mechanism by which isomerization takes place via one common intermediate state independent of electronic excitation energy and initial conformation.     

Adsorbate-localized versus substrate-mediated excitation mechanisms for generation of coherent Cs-Cu stretching vibration at Cu(111)

Coherent Cs-Cu stretching vibration at a Cu(111) surface covered with a full monolayer of Cs is observed by using time-resolved second harmonic generation spectroscopy, and its generation mechanisms and dynamics are simulated theoretically. While the irradiation with ultrafast pulses at both 400 and 800 nm generate the coherent Cs-Cu stretching vibration at a frequency of 1.8 THz (60 cm(-1)), they lead to two distinctively different features: the initial phase and the pump fluence dependence of the initial amplitude of coherent oscillation. At 400 nm excitation, the coherent oscillation is nearly cosine-like with respect to the pump pulse and the initial amplitude increases linearly with pump fluence. In contrast, at 800 nm excitation, the coherent oscillation is sine-like and the amplitude is saturated at high fluence. These features are successfully simulated by assuming that the coherent vibration is generated by two different electronic transitions: substrate d-band excitation at 400 nm and the quasi-resonant excitation between adsorbate-localized bands at 800 nm, i.e., possibly from an alkali-induced quantum well state to an unoccupied state originating in Cs 5d bands or the third image potential state.     

Optical nonlinear absorption and refraction of CdS and CdS-Ag core-shell quantum dots

The CdS and CdS-Ag core-shell quantum dots (QDs) have been prepared. The nanostructures of the QDs were revealed by transmisson electron microscopy and absorption spectra, respectively. The third-order nonlinear optical properties of the core-shell QDs have been studied by using Z-scan technique with femtosecond pulses at the wavelength of 790 nm. The value of the effective nonlinear absorption coefficient beta(eff) of CdS-Ag QDs is measured to be about 16.8 cm/GW, which is about 400 times larger than that of bare CdS QDs of 3.9 x 10(-2) cm/GW. The nonlinear refraction index gamma of CdS-Ag QDs is about -2.3 x 10(-4) cm(2)GW, which is about 200 times larger than that of bare CdS QDs of 1.0 x 10(-6) cm(2)GW.     

Single-molecule fluorescence lifetime and anisotropy measurements of the red fluorescent protein,DsRed, in solution

Fluorescence lifetime and anisotropy measurements were made on the red fluorescent protein (DsRed) from tropical coral of the Discosoma genus, both at single-molecule and bulk concentrations. As expected from previous work, the fluorescence lifetime of DsRed in solution is dependent on laser power, decreasing from an average fluorescence lifetime in the beam of about 3.3 ns at low power (3.5 ns if one extrapolates to zero power) to about 2.1 ns at 28 kW/cm2. At the single-molecule level, exciting with 532 nm, 10 ps laser pulses at 80 MHz repetition rate, DsRed particles entering the laser beam initially have a lifetime of about 3.6 ns and convert to a form having a lifetime of about 3.0 ns with a quantum yield of photoconversion on the order of 10(-3) (calculated in terms of photons per DsRed tetramer). The particles then undergo additional photoconversion with a quantum yield of roughly 10(-5), generating a form with an average lifetime of 1.6 ns. These results may be explained by rapid photoconversion of one DsRed monomer in a tetramer, which acts as an energy transfer sink, resulting in a lower quantum yield for photoconversion of subsequent monomers. Multiparameter correlation and selective averaging can be used to identify DsRed in a mixture of fluorophores, in part exploiting the fact that fluorescent lifetime of DsRed changes as a function of excitation intensity.     

Ultrafast UV-mid-IR investigation of the ring opening reaction of a photochromic spiropyran

We present a femtosecond UV-mid-IR pump-probe study of the photochemical ring-opening reaction of the spiropyran 1',3',3',-trimethylspiro-[-2H-1-benzopyran-2,2'-indoline] (also known as BIPS) in tetrachloroethene, using 70 fs UV excitation pulses and probing with 100 fs mid-IR pulses. The time evolution of the transient IR absorption spectrum was monitored over the first 100 ps after UV excitation. We conclude that the merocyanine product is formed with a 28 ps time constant, contrasting with a 0.9 ps time constant obtained in previous investigations where the rise of absorption bands at visible wavelengths were associated with product formation. We deduce from the observed strong recovery of the spiropyran IR absorption bleaches that, in tetrachloroethene, the main decay channel for the S(1) excited state of the spiropyran BIPS, is internal conversion to the spiropyran S(0) state with a quantum yield of > or = 0.9. This puts an upper limit of 0.1 to the quantum yield of the photochemical ring-opening reaction.     

The all-Cartesian reaction plane Hamiltonian: formulation and application to the H-atom transfer in tropolone

In this work we present an all-Cartesian reaction surface approach, where the large amplitude coordinates span the so-called reaction plane, that is, the unique plane defined by the two minima and the saddle-point structure of an isomerization reaction. Orthogonal modes are treated within harmonic approximation which gives the total Hamiltonian an almost separable form that is suitable for multidimensional quantum dynamics calculations. The reaction plane Hamiltonian is constructed for the H-atom transfer in tropolone as an example for a system with an intramolecular O...H-O hydrogen bond. We find ground-state tunneling splittings of 3.5 and 0.16 cm(-1) for the normal and deuterated species, respectively. We calculated infrared-absorption spectra for a four-dimensional model focusing on the low-frequency region. Here, we identify a reaction mode which is closely connected to the tautomerization that is reflected in the increase of tunneling splitting to 18 cm(-1) upon excitation.     

2+2] Photocycloaddition reaction dynamics of triplet pyrimidines

Taking the 266 nm excited pyrimidine (uracil or thymine) with cyclopentene as model reaction systems, we have examined the photoproduct formation dynamics from the [2 + 2] photocycloaddition reactions of triplet pyrimidines in solution and provided mechanistic insights into this important DNA photodamage reaction. By combining two compliment methods of nanosecond time-resolved transient IR and UV-vis laser flash-photolysis spectroscopy, the photoproduct formation dynamics as well as the triplet quenching kinetics are measured. Characteristic IR absorption bands due to photoproduct formation have been observed and product quantum yields are determined to be ～0.91% for uracil and ～0.41% for thymine. Compared to the measured large quenching rate constants of triplet uracil (1.5 × 10(9) M(-1)s(-1)) or thymine (0.6 × 10(9) M(-1)s(-1)) by cyclopentene, the inefficiency in formation of photoproducts indicates competitive physical quenching processes may exist on the route leading to photoproducts, resulting in very small product yields eventually. Such an energy wasting process is found to be resulted from T(1)/S(0) surface crossings by the hybrid density functional calculations, which compliments the experiments and reveals the reaction mechanism.     

Optimal control of ultrafast cis-trans photoisomerization of retinal in rhodopsin via a conical intersection

Optimal control simulation is applied to the cis-trans photoisomerization of retinal in rhodopsin within a two-dimensional, two-electronic-state model with a conical intersection [S. Hahn and G. Stock, J. Phys. Chem. B 104, 1146 (2000)]. For this case study, we investigate coherent control mechanisms, in which laser pulses work cooperatively with a conical intersection that acts as a "wave-packet cannon." Optimally designed pulses largely consist of shaping subpulses that prepare a wave packet, which is localized along a reaction coordinate and has little energy in the coupling mode, through multiple electronic transitions. This shaping process is shown to be essential for achieving a high target yield although the envelopes of the calculated pulses depend on the local topography of the potential-energy surfaces around the conical intersection and the choice of target. The control mechanisms are analyzed by considering the motion of reduced wave packets in a nuclear configuration space as well as by snapshots of probability current-density maps.