STUDIES OF TPSR AND PULSE REACTION OF METHYL IODIDE ON SILICA-SUPPORTED NOBLE METAL CATALYSTS

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Characterization and oxidative addition reactions for iridium cod complexes

Three different [Ir(LL′)(cod)] complexes (LL′ = N-aryl-N-nitrosohydroxylaminato) (cupf), trifluoroacetylacetonato (tfaa), and (methyl 2-(methylamino)-1-cyclopentene-1-dithiocarboxylato-κN,κS) (macsm)) were synthesized, characterized, and their rates of oxidative addition with methyl iodide were determined. Formation of an isosbestic point during the oxidative addition of methyl iodide with the complexes containing tfaa and cupf as bidentate ligands indicated formation of only one product, while an increase in absorbance maximum observed for macsm confirms that the same reaction between the complex and methyl iodide occurs. Kinetic results for all complexes, except [Ir(tfaa)(cod)], showed simple second-order kinetics with a zero intercept (within experimental error). Rates of oxidative addition for bidentate ligands in acetonitrile showed an increase of an order of magnitude with a change in the type of bidentate ligands. Computational chemistry using density functional theory calculations showed that the oxidative addition reaction proceeds through a “linear” transition state with the methyl iodide unit tilted towards the LL′-bidentate ligand.     

Proton transfer in a polar solvent from ring polymer reaction rate theory

We have used the ring polymer molecular dynamics method to study the Azzouz-Borgis model for proton transfer between phenol (AH) and trimethylamine (B) in liquid methyl chloride. When the A-H distance is used as the reaction coordinate, the ring polymer trajectories are found to exhibit multiple recrossings of the transition state dividing surface and to give a rate coefficient that is smaller than the quantum transition state theory value by an order of magnitude. This is to be expected on kinematic grounds for a heavy-light-heavy reaction when the light atom transfer coordinate is used as the reaction coordinate, and it clearly precludes the use of transition state theory with this reaction coordinate. As has been shown previously for this problem, a solvent polarization coordinate defined in terms of the expectation value of the proton transfer distance in the ground adiabatic quantum state provides a better reaction coordinate with less recrossing. These results are discussed in light of the wide body of earlier theoretical work on the Azzouz-Borgis model and the considerable range of previously reported values for its proton and deuteron transfer rate coefficients.     

Dimethyl cuprate undergoes C-C bond coupling with methyliodide in the gas phase but dimethyl argenate does not

Multistage mass spectrometry experiments have been used to synthesize and study the reactions of (CH3)2M-(M = Cu and Ag) with methyl iodide in the gas phase. While the dimethylcuprate ion (M = Cu) reacts with CH3I via C-C bond cross coupling, its silver congener is unreactive. The experimental results are consistent with MP2/6-31++G** ab initio calculations, which reveal that the preferred mechanism for Cu involves the formation of a T-shaped Cu transition state. [reaction: see text]     

Femtosecond multichannel photodissociation dynamics of CH3I from the A band by velocity map imaging

The reaction times of several well-defined channels of the C-I bond rupture of methyl iodide from the A band, which involves nonadiabatic dynamics yielding ground state I(2P3/2) and spin-orbit excited I*(2P1/2) and ground and vibrationally excited CH3 fragments, have been measured by a combination of a femtosecond laser pump-probe scheme and velocity map imaging techniques using resonant detection of ground state CH3 fragments. The reaction times found for the different channels studied are directly related with the nonadiabatic nature of this multidimensional photodissociation reaction.     

Photoinduced-reaction dynamics of halogenated alkanes on iron oxide surfaces: CH3I on Fe3O4(111)-(2x2)

The adsorption, thermal chemistry, and photoreaction dynamics of methyl iodide on the (2x2) magnetite termination of natural single-crystal hematite have been investigated by time-of-flight quadrupole mass spectrometry (TOF-QMS), temperature-programmed desorption (TPD) and Auger electron spectroscopy (AES). The methyl iodide thermal desorption spectra, taken after dosing the (2x2) surface at 100 K with CH(3)I, show a multiple-peak coverage-dependent behavior, consistent with the presence of several distinct adsorbed phases, along with defect-mediated dissociative chemisorption in the first monolayer. At >1 ML, methyl iodide forms a metastable physisorbed second layer, which desorbs at 148 K, but at higher coverage converts to a layer, which desorbs at 170 K. In the presence of low-fluence-pulse irradiation at 248 nm, angle-resolved TOF-QMS measurements show that 1.6 and 0.3 eV CH(3) fragments are ejected from the adsorbate surface; these fragments originate from direct photodissociation and dissociative photoinduced electron transfer, respectively. These energetic photoejected fragments have characteristic angular distributions peaked at approximately 0 degree with respect to the surface normal. These results and the coverage-dependent relative intensities suggest that the predominant orientation in the first monolayer of the adsorbed CH(3)I is normal to the crystal plane.     

Enhancement of electron-capture detection of methyl bromide in air by iodination.

An instrumentally simple and cost-effective method for the direct analysis of methyl bromide in ambient air is described. The method is based on the separation of sample components by gas chromatography, the conversion of methyl bromide to methyl iodide by reaction with an inorganic iodide salt, and the detection of the methyl iodide thereby produced by an electron-capture detector. Of the 20 different inorganic salts investigated here for conversion of methyl bromide to methyl iodide, zinc iodide was found to provide the greatest conversion efficiency. In addition, zinc iodide was found to provide high conversion efficiency at a modest reaction temperature, thereby minimizing both the thermal decomposition of compounds within the reaction volume and the level of column bleed introduced to the detector. The reactions of several other brominated and chlorinated organic compounds with zinc iodide have also been characterized. The successful application of this instrument to the quantitative determination of methyl bromide in a local background air sample is then demonstrated.     

Mesoionic dimethyl derivatives of some 1,2,4-triazinones. The course of the reaction of 3,5-dimethoxy, 3-methoxy-5-methylthio, 5-methoxy-3- methylthio and 3,5-bis(methylthio)-1,2,4-triazine with methyl iodide

Treatment of 3,5-dimethoxy-1,2,4-triazine ( 1a ) with methyl iodide was found to give depending on the reaction time triazinium iodide 2a , triaziniumolates 4a and 6a as well as methoxytriazinones 7a and 8a . Thermolysis of 2a gave triaziniumolates 4a and 6a . Reaction of 2a , 4a or methoxytriazinone 9a with methyl iodide in acetonitrile yielded as the sole product 6a . Reaction of 3-methoxy-5-methylthio-1,2,4-tri-azine (1b ) with methyl iodide gave triazinium iodide 2b and methylthio triazinone 7b . Hydrolysis of 2a,b afforded 4a . Reaction of 5-methoxy-3-methylthio-1,2,4-triazine ( 1c ) with methyl iodide gave triazinium iodide 2c , triaziniumolate 4b , triazinium iodide 5b and triazinone 8b . Hydrolysis of 2c yielded 4b and its thermolysis gave a mixture of 4b and 5b . Reaction of 2c , 4b and triazinone 9b with methyl iodide afforded 5b . Treatment of 3,5-bis(methylthio)-1,2,4-triazine ( 1d ) with methyl iodide was found to give a mixture of N1 and N2 methiodides 2d and 3d which gave on hydrolysis 4b and 8b , respectively. Methylation of 6-methyl derivatives 1c-g gave analogous results, however the proportions of N1 methylated products were lower and the reaction rates higher in comparison to their respective lower homologues 1a,c,d . The structures of the mesoionic dimethyl derivatives were assigned from uv, ir, ¹H nmr and electron impact mass spectra. The structural assignments were eventually confirmed by quantum chemical calculations of net charge distributions, bond lengths and ipso angles of the C5?O bonds.     

Two-photon MPI spectroscopy of alkyl iodides

The two-photon resonant multiphoton ionization (MPI) spectra of methyl iodide, methyl iodide-d₃, ethyl, propyl, and butyl iodide are reported in the 49 000-55 000 cm^?1 region. Four separate transitions to excited states labeled Δ, Π, Σ, Π in increasing energy are expected in this range which result from the excitation of an iodine 5pπ electron to the 6s molecular Rydberg orbital. Two-photon spectroscopy with its different selection rules and unique dependence on the laser polarization is shown to significantly advance the understanding of these transitions. In particular, laser polarization studies identify a state which is strongly two-photon allowed but absent in the UV absorption spectrum as the Σ state. Rotational contours indicate a large geometry change takes place in this transition. The two Π states appear strongly in both the one-and two-photon spectrum. Polarization analysis confirms their electronic symmetry assignment in addition to distinguishing vibronic bands arising from nontotally symmetric vibrations. No evidence is found for the Δ state in the multiphoton ionization spectrum, due to either a small two-photon cross section or a low probability of ionization following the initial two-photon transition. Further complications and characteristics of single laser MPI spectroscopy in the study of two-photon absorption in methyl iodide and other fundamental molecules are discussed.     

硼氢化反应机理Ⅳ——甲基腈硼氢化反应的反应途径解析(英文)

利用量子化学从头计算法ＲＨＦ／４－３１Ｇ基组对ＣＨ３ＣＮ＋ＢＨ３反应进行了理论研究．ＩＲＣ分析表明：甲基腈与甲硼烷通过“类四中心”过渡态，直接加成生成产物．计算的活化能是３４６２６８ｋＪ／ｍｏｌ．计算发现在反应途径中，ＢＨ３分子片随着与ＣＨ３ＣＮ分子片的接近经历一个由电子受体到电子授体的变化，并用前线轨道理论作了解释．     

Peralkylation of pentaerythritol for gas chromatographic— mass spectrometric analysis

Summary A rapid and convenient method for the full O-alkylation of pentaerythritol was investigated. The method involves an alkyl halide in a polar aprotic solvent, in the presence of sodium hydroxide. The optimal reaction conditions were studied for methyl iodide, ethyl iodide and bromide, n-propyl bromide and n-butyl bromide. Methyl and propyl derivatives were quantitatively obtained in a short reaction time. The method was applied for the gas chromatographic—mass spectrometric analysis of a commerical pentaerythritol sample.     

Solvatochromic effect and kinetics of methyl violet reduction with potassium iodide in water–isopropanol mixtures

The solvent influence on the reduction kinetics of methyl violet with iodide in binary mixture of aqueous isopropanol was investigated spectrophotometrically. The absorption spectra of methyl violet were recorded in water, aqueous isopropanol and absolute isopropanol. In these solvents λ_max was in the range from 580.5 to 582.5 nm. The CNIBS/R-K model was used to calculate the solvatochromic parameters in a binary mixture; polynomial equation was also applied to describe the experimental data. The transition energies (E_T) were calculated. They show bathochromic shift with the decrease in the polarity of the solvent. The temperature was varied from 298–318 K, while the pH of the reaction was maintained at 4.99 and 6.00. The reduction reaction was found to be first order by potassium iodide and zero order by methyl violet. The thermodynamic parameters were also evaluated to support the kinetic data.     

甲胺在清洁及磷改性Mo(100)表面的解离

采用广义梯度近似(GGA)的密度泛函理论(DFT)(DFT-GGA)并结合平板模型, 研究了甲胺在清洁及磷(P)改性的Mo(100)表面(P-Mo(100))发生C—N键断裂的反应历程(CH3NH2→CH3+NH2). 优化了裂解过程中反应物、过渡态和产物的几何构型, 获得了反应路径上各物种的吸附能及反应的活化能数据. 计算结果表明, 在清洁和磷改性的Mo(100)表面, 甲胺均稳定吸附在顶位, 甲基和氨基最稳定的吸附位置均为桥位. 甲胺的C—N键在P-Mo(100)表面裂解的活化能为2.39 eV, 高于其在清洁表面的活化能(1.99 eV). 这表明Mo(100)表面被预吸附的P原子钝化了. 电子结构分析表明, 改性P原子使得金属Mo的供电子能力减弱, 导致它的d带中心下移, 从而降低了该表面的反应活性, 提高了甲胺的C—N键裂解的活化能. 活化能的分解表明, C—N键在P-Mo(100)与Mo(100)表面裂解的活化能的差异主要体现在初态到过渡态时甲胺的结构变化引起的能量变化(△EdefCH3NH2)、过渡态仅有甲基存在时的吸附能(ETSCH3)和过渡态甲基和氨基的相互作用(EintCH3…NH2). △EdefCH3NH2和ETSCH3使活化能升高幅度大于EintCH3…NH2使活化能降低幅度, 最终导致甲胺的C—N键在P-Mo(100)表面裂解的活化能要高于在Mo(100)表面裂解的活化能.     

Localized reaction at a smooth metal surface: p-diiodobenzene at Cu(110)

Halogenation at a semiconductor surface follows simple dynamics characterized by "localized reaction" along the direction of the halide bond being broken. Here we extend the study of halide reaction dynamics to the important environment of a smooth metal surface, where greater product mobility would be expected. Extensive examination of the physisorbed reagent and chemisorbed products from two successive electron-induced reactions showed, surprisingly, that for this system product localization and directionality described the dynamics at a metal. The reagent was p-diiodobenzene on Cu(110) at 4.6 K. The first C-I bond-breaking yielded chemisorbed iodophenyl and I-atom(#1), and the second yielded phenylene and I-atom(#2). The observed collinear reaction resulted in secondary encounters among products, which revealed the existence of a surface-aligned reaction. The molecular dynamics were well explained by a model embodying a transition between an a priori ground state and a semiempirical ionic state, which can be generally applied to electron-induced chemical reactions at surfaces.     

Exploring reaction pathways with transition path and umbrella sampling: application to methyl maltoside

The transition path sampling (TPS) method is a powerful approach to study chemical reactions or transitional properties on complex potential energy landscapes. One of the main advantages of the method over potential of mean force methods is that reaction rates can be directly accessed without knowledge of the exact reaction coordinate. We have investigated the complementary nature of these two differing approaches, comparing transition path sampling with the weighted histogram analysis method to study a conformational change in a small model system. In this case study, the transition paths for a transition between two rotational conformers of a model disaccharide molecule, methyl beta-D-maltoside, were compared with a free energy surface constrained by the two commonly used glycosidic (phi,psi) torsional angles. The TPS method revealed a reaction channel that was not apparent from the potential of mean force method, and the suitability of phi and psi as reaction coordinates to describe the isomerization in vacuo was confirmed by examination of the transition path ensemble. Using both transition state theory and transition path sampling methods, the transition rate was estimated. We have estimated a characteristic time between transitions of approximately 160 ns for this rare isomerization event between the two conformations of the carbohydrate. We conclude that transition path sampling can extract subtle information about the dynamics not apparent from the potential of mean force method. However, in calculating the reaction rate, the transition path sampling method required 27.5 times the computational effort than was needed by the potential of mean force method.     

Kinetics and dynamics of the NH3 + H → NH2 + H2 reaction using transition state methods, quasi-classical trajectories, and quantum-mechanical scattering

On a recent analytical potential energy surface developed by two of the authors, an exhaustive kinetics study, using variational transition state theory with multidimensional tunneling effect, and dynamics study, using both quasi-classical trajectory and full-dimensional quantum scattering methods, was carried out to understand the reactivity of the NH(3) + H → NH(2) + H(2) gas-phase reaction. Initial state-selected time-dependent wave packet calculations using a full-dimensional model were performed, where the total reaction probabilities were calculated for the initial ground vibrational state and for four excited vibrational states of ammonia. Thermal rate constants were calculated for the temperature range 200-2000 K using the three methods and compared with available experimental data. We found that (a) the total reaction probabilities are very small, (b) the symmetric and asymmetric N-H stretch excitations enhance the reactivity, (c) the quantum-mechanical calculated thermal rate constants are about one order of magnitude smaller than the transition state theory results, which reproduce the experimental evidence, and (d) quasi-classical trajectory calculations, which were performed with the main goal of analyzing the influence of the zero-point energy problem on the final dynamics results, reproduce the quantum scattering calculations on the same surface.     

Wild-type and molten globular chorismate mutase achieve comparable catalytic rates using very different enthalpy/entropy compensations

The origin of the catalytic power of enzymes with a meta-stable native state,e.g.molten globular state,is an unsolved challenging issue in biochemistry.To help understand the possible differences between this special class of enzymes and the typical ones,we report here computer simulations of the catalysis of both the well-folded wild-type and the molten globular mutant of chorismate mutase.Using the ab initio quantum mechanical/molecular mechanical minimum free-energy path method,we determined the height of reaction barriers that are in good agreement with experimental measurements.Enzyme-substrate interactions were analyzed in detail to identify factors contributing to catalysis.Computed angular order parameters of backbone N–H bonds and side-chain methyl groups suggested site-specific,non-uniform rigidity changes of the enzymes during catalysis.The change of conformational entropy from the ground state to the transition state revealed distinctly contrasting entropy/enthalpy compensations in the dimeric wild-type enzyme and its molten globular monomeric variant.A unique catalytic strategy was suggested for enzymes that are natively molten globules:some may possess large conformational flexibility to provide strong electrostatic interactions to stabilize the transition state of the substrate and compensate for the entropy loss in the transition state.The equilibrium conformational dynamics in the reactant state were analyzed to quantify their contributions to the structural transitions enzymes needed to reach the transition states.The results suggest that large-scale conformational dynamics make important catalytic contributions to sampling conformational regions in favor of binding the transition state of substrate.     

Theoretical studies on the hydrogen atom transfer reaction

The hydrogen atom transfer reaction between substituted methanes (substituents; H, F, CH₃, OH, and CN) and methyl radicals was studied by 4-31G (UHF) calculations using the MINDO/3 geometries. The transition state structures and energy barriers were determined, and variations of the transition state and of the reactivity due to the change of substituent were analyzed based on the potential energy surface characteristics. It was concluded that the reaction is of the S_H2 type with a backside attack, and transition state variations are controlled by the vector sum of the component parallel to (Hammond rule) and one perpendicular to the reaction coordinate (anti-Hammond rule). It was also concluded that the most important factor influencing the reactivity is bond dissociation energy effect directly related to the spin transfer of the radical species, and the polar effect need not be overemphasized.     

Ultrafast photodissociation dynamics of acetone at 195 nm: I. Initial-state, intermediate, and product temporal evolutions by femtosecond mass-selected multiphoton ionization spectroscopy

The photodissociation dynamics of the acetone S2 (n, 3s) Rydberg state excited at 195 nm has been studied by using femtosecond pump-probe mass-selected multiphoton ionization spectroscopy. For the first time, the temporal evolutions of the initial state, intermediates, and methyl products were simultaneously measured and analyzed for this reaction to elucidate the complex dynamics. Two mechanisms were considered: (1) the commonly accepted mechanism in which the primary dissociation occurs on the first triplet-state surface, and (2) the recently proposed mechanism in which the primary dissociation takes place on the first singlet-excited-state surface. Our results and analyses supported the validity of the new mechanism. On the other hand, the conventional mechanism was found to be inadequate to describe the observed dynamics. The temporal evolution of methyl products arising from the secondary dissociation of hot acetyl intermediates exhibited a very complex behavior that can be ascribed to the combination of a nonuniform initial vibrational distribution and the competition between dissociation and slow intramolecular vibrational redistribution.     

A single transition state serves two mechanisms. The branching ratio for CH2O*- + CH3Cl on improved potential energy surfaces

The reaction of formaldehyde radical anion with methyl chloride, CH2O*- + CH3Cl, is an example in which a single transition state leads to two products: substitution at carbon (Sub(C), CH3CH2O* + Cl-) and electron transfer (ET, CH2O + CH3* + Cl-). The branching ratio for this reaction has been studied by ab initio molecular dynamics (AIMD). The energies of transition states and intermediates were computed at a variety of levels of theory and compared to accurate energetics calculated by the G3 and CBS-QB3 methods. A bond additivity correction has been constructed to improve the Hartree-Fock potential energy surface (BAC-UHF). A satisfactory balance between good energetics and affordable AIMD calculations can be achieved with BH&HLYP/6-31G(d) and BAC-UHF/6-31G(d) calculations. Approximately 200 ab initio classical trajectories were calculated for each level of theory with initial conditions sampled from a thermal distribution at 298 K at the transition state. Three types of trajectories were distinguished: trajectories that go directly to ET product, trajectories that go to Sub(C) product, and trajectories that initially go into the Sub(C) valley and then dissociate to ET products. The BH&HLYP/6-31G(d) calculations overestimate the number of nonreactive and direct ET trajectories because the transition state is too early. For the BH&HLYP and BAC-UHF methods, about one-third of the trajectories that initially go into the Sub(C) valley dissociate to ET products, compared to just over half with UHF/6-31G(d) in the earlier study. This difference can be attributed to a better value for the calculated energy release from the initial transition state and to an improved Sub(C) --> ET barrier height with the BH&HLYP and BAC-UHF methods.