Synthesis of 6aλ4-thia-1,6-diselena-3,4-diazapentalenes, 1,6,6aλ4-triselena-3,4-diazapentalenes, 6aλ4-thia-1,3,4,6-tetraazapentalenes,and 6aλ4-Selena-1,3,4,6-tetraazapentalenes from cyclic thioureas and selenoureas

Imidazolidine-2-thione (7a) and the corresponding 2-selone (7b), hexahydropyrimidine-2-thione (7c) and 2-selone (7d), and hexahydro-1H-1,3-diazepine-2-thione (7e) and 2-selone (7f) reacted with 2,4-dinitrobenzyl chloride to give the 2-(2,4-dinitrobenzylthio) and 2-(2,4-dinitrobenzylseleno) derivatives (8a)-(8f) of 4,5-dihydroimidazolium chloride, 1,4,5,6-tetrahydropyr-imidinium chloride, and 4,5,6,7-tetrahydro-1H-1,3-diazepinium chloride. Deprotonation of the chlorides (8a)-(8f) gave, respectively, 2-(2,4-dinitrobenzylthio)-and 2-(2,4-dinitrobenzylseleno)-4,5-dihydroimidazole (9a) and (9b), 2-(2,4-dinitrobenzylthio)- and 2-(2,4-dinitrobenzylseleno)-1,4,5,6-tetrahydropyrimidine (9c) and (9d), and 2-(2,4-dinitrobenzylthio)- and 2-(2,4-dinitrobenzylseleno)-4,5,6,7-tetrahydro-1H-1,3-diazepine (9e) and (9f). The bases (9a)-(9f) reacted with isoselenocyanates with elimination of 2,4-dinitrotoluene and concomitant addition of two molecules of the isoselenocyanate to give 1,6,6aλ⁴-triheterapentalenes of two structural types, depending on the size of the heteroring in the bases (9a)-(9f). The imidazoles (9a) and (9b) gave 6aλ⁴-thia-1,6-diselena-3,4-diazapentalenes (10a)-(10j) and 1,6,6aλ⁴-triselena-3,4-diazapentalenes (11a)-(11h), respectively. The sulfur-containing bases (9c) and (9e) gave 6aλ⁴-thia-1,3,4,6-tetraazapentalenes (12a)-(12j) and (14a)-(14d), respectively, and the selenium-containing bases (9d) and (9f) gave 6aλ⁴-selena-1,3,4,6-tetraazapentalenes (13a)-(13j) and (15a)-(15d). Heteroatom-heteroatom covalent bond energies have been estimated for representative members of the series (10)-(14) by using the Huggins equation and experimentally determined bond lengths. © 1997 John Wiley & Sons, Inc.     

[1a(1aα,5β,9aα)]‐1,1a,4,5,7,8,9,9a‐Octahydro‐3‐hydroxy‐1,1,2,5‐tetramethyl‐7‐methylene‐6H‐cyclopropa[3,4]cyclo­hept[1,2‐e]inden‐6‐one

Interest in the title structure, C₂₀H₂₄O₂, lies in the novel cis ring junction between the three‐ and seven‐membered rings. This stereochemical arrangement causes the methylene moiety and the cycloheptane ring to be twisted out of the plane of the aromatic ring. The cyclopropane ring is also twisted out of the plane of the aromatic system. The molecules are linked by an O—H?O hydrogen bond [O?O 2.741 (3) Å].     

(4aR,8aS,9aR,10aS)‐8a,9a‐Difluoro‐1,4,4a,5,8,8a,9,9a,10,10a‐decahydroanthracene‐4a,10a‐diol hemihydrate

The title compound, C₁₄H₁₈F₂O₂·0.5H₂O, a hemihydrate of a C_s‐symmetric unsaturated difluorodiol, crystallizes in the centrosymmetric space group P2/m (Z = 4). The asymmetric unit contains two crystallographically independent difluorodiol half‐molecules, occupying the mirror planes at (x, 0, z) and (x, , z), and half a molecule of water, lying on the twofold axis at (0, y, 0). Four difluorodiol molecules self‐assemble around each solvent water molecule via O—H...O hydrogen bonds in a near tetrahedral symmetry to generate a cylindrical column‐like architecture.     

Supramolecular architectures in cytosinium 6‐chloronicotinate monohydrate and 5‐bromo‐6‐methylisocytosinium hydrogen sulfate

Aminopyrimidine derivatives are biologically important as they are components of nucleic acids and drugs. The crystals of two new salts, namely cytosinium 6‐chloronicotinate monohydrate, C₄H₆N₃O⁺·C₆H₃ClNO₂⁻·H₂O, ( I ), and 5‐bromo‐6‐methylisocytosinium hydrogen sulfate (or 2‐amino‐5‐bromo‐4‐oxo‐6‐methylpyrimidinium hydrogen sulfate), C₅H₇BrN₃O⁺·HSO₄⁻, ( II ), have been prepared and characterized by single‐crystal X‐ray diffraction. The pyrimidine ring of both compounds is protonated at the imine N atom. In hydrated salt ( I ), the primary R₂²(8) ring motif (supramolecular heterosynthon) is formed via a pair of N—H…O(carboxylate) hydrogen bonds. The cations, anions and water molecule are hydrogen bonded through N—H…O, N—H…N, O—H…O and C—H…O hydrogen bonds, forming R₂²(8), R₃²(7) and R₅⁵(21) motifs, leading to a hydrogen‐bonded supramolecular sheet structure. The supramolecular double sheet structure is formed via water–carboxylate O—H…O hydrogen bonds and π–π interactions between the anions and the cations. In salt ( II ), the hydrogen sulfate ions are linked via O—H…O hydrogen bonds to generate zigzag chains. The aminopyrimidinium cations are embedded between these zigzag chains. Each hydrogen sulfate ion bridges two cations via pairs of N—H…O hydrogen bonds and vice versa, generating two R₂²(8) ring motifs (supramolecular heterosynthon). The cations also interact with one another via halogen–halogen (Br…Br) and halogen–oxygen (Br…O) interactions.     

Di­methyl 6‐methoxy‐4aβ‐methyl‐9‐oxo‐1,2,3,4,4a,9,10,10aβ‐octa­hydro­phenanthrene‐1,1‐di­carboxyl­ate

In the title tricyclic keto‐diester, C₂₀H₂₄O₆, a potential intermediate in the synthesis of bioactive podocarpic acid, the outer cyclo­hexane ring (in a chair conformation) is cis fused to the central cyclo­hexanone ring (in a half‐chair conformation). The conformational analysis of the compound, investigated by semi‐empirical quantum mechanical AM1 calculations, shows a good agreement with the X‐ray structure, except for the orientation of the methyl, methoxy­phenyl and methoxy­carbonyl substituents.     

Base‐promoted rearrangements of ester groups in 3a,7a‐dihydroindole‐2,3,3a,4‐tetraester

Tetramethyl 3a,7a‐dihydro‐1‐methyl‐1H‐indole‐2,3,3a,4‐tetracarboxylate which is an 1:2 adduct of 1‐methylpyrrole and dimethyl acetylenedicarboxylate underwent isomerization catalyzed by sodium methoxide to form a 5,7a‐dihydro‐1‐methyl‐1H‐indole‐2,3,4,5‐tetracarboxylate, its 5,6‐dihydro isomer, and a ring opening product which is an azonine derivative. Fully aromatized esters such as 1‐methylindole‐2,3,4‐triester, 1‐methylindole‐2,3,4,5‐tetraester and 1‐methyl‐2,3,4,6‐tetraester were also isolated. An indole compound which could be formed by conjugative addition of the methoxide ion was also isolated.     

(–)‐2‐(1,2,3,4,4a,5,6,7,8,8aα‐Decahydro‐4aβ,8α‐dimethyl‐7‐oxo‐2β‐naphthyl)propionic acid: catemeric hydrogen bonding in a bicyclic sesquiterpenoid ζ‐keto acid

In the title compound, C₁₅H₂₄O₃, derived from a naturally occurring sesquiterpenoid, the asymmetric unit consists of two mol­ecules differing by 167.4 (8)° in the rotational conformation of the carboxyl group. Each molecule aggregates separately with its own type as carboxyl‐to‐ketone hydrogen‐bonding catemers [O⋯O = 2.715 (6) and 2.772 (6) Å, and O—H⋯O = 169 and 168°]. This generates two crystallographically independent single‐strand hydrogen‐bonding helices passing through the cell in the b direction, with opposite end‐to‐end orientations. One intermolecular C—H⋯O=C close contact exists for the carboxyl group of one of the mol­ecules. The structure is isostructural with that of a closely related unsaturated keto acid reported previously.     

9‐Phenyl‐3,4,4a,9a‐tetrahydrotri­ptycene and 9‐phenyl‐1,2,3,4,4a,9a‐hexa­hydro­triptycene

The structure of 9‐phenyl‐3,4,4a,9a‐tetra­hydro­triptycene, C₂₆H₂₂, (I), exhibits regiochemistry consistent with a stepwise mechanism for its formation from photo­cyclo­addition of 1,3‐cyclo­hexa­diene and 9‐phenyl­anthracene. Bond distances involving the bridgehead C atoms are similar in (I) and the hydrogenated derivative, 9‐phenyl‐1,2,3,4,4a,9a‐hexa­hydro­triptycene, C₂₆H₂₄, (II), with bonds to the quaternary‐C atoms exhibiting significant elongation [1.581 (2) Å in (I) and 1.585 (2) Å in (II)]. The molecular geometry precludes significant σ–π overlap between the phenyl groups and the interannular bonds in both compounds, indicating that the origin of the bond lengthening is steric in nature.     

Structural Variability of R2C Adducts of 3a,6a‐Diaza‐1,4‐diphosphapentalene: Tuning the N→P Bonding

3a,6a‐Diaza‐1,4‐diphosphapentalene (DDP) reacts with hexachlorocyclopentadiene to form a stable adduct (ClC)₄C=DDP ( 4 ). The phosphorus atom involved into coordination has a pyramidal arrangement but retains partial double bonding with carbon [1.752(3) Å]. At the same time, the P–N bond remains covalent [1.824(3) Å]. The adduct 4 is better described as a zwitterionic compound with strongly delocalized positive and negative charges. A similar zwitterionic adduct DDP=C(CN)₂ was prepared by the reactions of dichloro‐DDP ( 7 ) with malononitrile in the presence of Et₃N. DFT calculations showed that related structures are formed in the case of the substituents (ClC)₄C=, (HC)₄C=, (NC)₂C=, and (MeCO)₂C=, possessing electron‐delocalizing properties. Compounds with other R₂C groups (R = Ph, Me, C₆F₅, Cl), possessing electronegative properties as well, but insufficient e‐delocalization, demonstrate the noncovalent P–N bonding and a little shorter R₂C–P bond lengths (ca. 1.70 Å).     

trans‐Bis(2,2‐diphenyl­ethyl­amine‐κN)bis­(5,5‐diphenyl­hydantoinato‐κN3)copper(II) and its chloro­form disolvate

The crystal structures of the title compounds, [Cu(C₁₅H₁₁N₂O₂)₂(C₁₄H₁₅N)₂] and [Cu(C₁₅H₁₁N₂O₂)₂(C₁₄H₁₅N)₂]·2CHCl₃, respectively, have been determined. The red disolvate complex affords a square‐planar CuN₄ coordination environment in which the Cu^II atom lies on a centre of symmetry. The blue solvent‐free complex affords a distorted square‐pyramidal CuN₄O coordination environment and adjacent mol­ecules form centrosymmetric dimers. A comparison of the different crystal structures focuses on the role of the solvent mol­ecules in supramolecular assemblies of the copper(II) complexes.     

Tri­carbonyl­[(6a,7,8,9,10a‐η)‐3,3‐di­methyl‐3H‐benzo­[f]­chromene]chromium

The title compound, [Cr(C₁₅H₁₄O)(CO)₃], is a chromene complexed with tri­carbonyl­chromium and it exhibits photochromic properties. The molecular geometry is compared to that of two similar complexes. The analysis results indicate that complexation has minor effects on the chromene structure.     

Bis(μ‐diphenyl­phosphinato‐κ2O:O′)bis­[aqua­(diphenyl­phosphinato‐κO)bis­(pyridine‐κN)cobalt(II)]

In the centrosymmetric title compound, [Co₂(C₁₂H₁₀O₂P)₄(C₅H₅N)₄(H₂O)₂], each approximately octa­hedral Co atom features two trans‐coordinated pyridine mol­ecules, one water mol­ecule, a terminally coordinated monodentate diphenyl­phosphinate ligand, and two bidentate diphenyl­phosphinate ligands that bridge the two Co atoms across a centre of inversion to form a dimeric binuclear complex. The discrete mol­ecules are linked by double hydrogen bonds between the terminally coordinated diphenyl­phosphinate ligand and the water mol­ecule to form a continuous chain along the crystallographic b axis.     

Ethyl (6aRS,8RS,12bRS)‐6‐oxo‐8‐phenyl‐6a,7,8,12b‐tetra­hydro‐6H‐benzo­[b]naphtho­[1,2‐d]­pyran‐6a‐carboxylate

In the title compound, C₂₆H₂₂O₄, the pyran­one ring adopts a twisted boat conformation, while the cyclo­hexane ring is close to an envelope conformation. The dihedral angle between the mean planes of the coumarin and naphthalene systems is 78.8 (1)°. The attached phenyl ring is in an equatorial position with respect to the cyclo­hexane ring.     

Synthesis and crystal structure of 10a‐oxo‐1‐phenylimino‐ 10‐propyl‐3,4,10,10a‐tetrahydro‐1H‐ 2‐thia‐4a,10‐diaza‐10aλ5‐ phospha‐phenanthren‐9‐one

The title novel fused tricyclic phosphoroheterocycle, C₁₉H₂₀N₃O₂PS, was synthesized in an excellent yield of 88.5% via the reac‐ tion of 1‐(2‐bromoethyl)‐2,3‐dihydro‐3‐propyl‐1,3,2‐benzodiazaphosphorin‐4(1H)‐one 2‐oxide with phenyl isothiocyanate, which contains the proximate imino and phosphoryl groups in the fused heterocycle. The crystallographic data analysis reveals that the title compound crystallizes into triclinic space group P with unit cell parameters: a = 9.159(3) Å, b = 10.463(4) Å, c = 10.698(4) Å, α = 88.090(6)°, β = 86.921(6)°, γ = 70.528(6)°, V = 965.0(6) ų for Z = 2 and there is a fused three‐ring in the molecule. The structure has been solved by direct methods and refined to R = 0.0424 for 2451 observed reflections with I >2 σ(I). The proximate imino and phosphoryl groups are not coplanar because both are jointly located in the fused heterocycle, thus having ring tension and this then destroys the conjugation between the CN and the PO moieties. © 2005 Wiley Periodicals, Inc. Heteroatom Chem 16:671–676, 2005; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/hc.20169     

Pseudomerohedrally twinned crystal structure of 2,3‐diphenyl­buta‐1,3‐diene

The title compound, C₁₆H₁₄, is twinned by reticular pseudomerohedry of twin index 2. The primitive monoclinic cell of the single crystal can be transformed into a B‐centred pseudo‐orthorhombic supercell with a fourfold volume. The twofold twin operation about the reciprocal a* axis of the primitive monoclinic cell is co‐directional with the approximate C₂ axis of the mol­ecule and a symmetry element of the orthorhombic supercell. A tentative twin domain model is proposed.     

Crystal structures,packing features,Hirshfeld surface analyses and DFT calculations of hydrogen‐bond energy of two homologous 8a‐aryl‐2,3,4,7,8,8a‐hexahydropyrrolo[1,2‐a]pyrimidin‐6(1H)‐ones

The crystal structures and packing features of two homologous Meyer's bicyclic lactams with fused pyrrolidone and medium‐sized perhydropyrimidine rings, namely, 8a‐phenyl‐2,3,4,7,8,8a‐hexahydropyrrolo[1,2‐a]pyrimidin‐6(1H)‐one, C₁₃H₁₆N₂O ( 1 ), and 8a‐(4‐methylphenyl)‐2,3,4,7,8,8a‐hexahydropyrrolo[1,2‐a]pyrimidin‐6(1H)‐one, C₁₄H₁₈N₂O ( 2 ), were elucidated, and Hirshfeld surface plots were calculated and drawn for visualization and a deeper analysis of the intermolecular noncovalent interactions. Molecules of 1 and 2 are weakly linked by intermolecular C=O…H—N hydrogen bonds into chains, which are in turn weakly linked by other C=O…H—C_ar interactions. The steric volume of the substituent significantly affects the crystal packing pattern.     

1,4‐Methano‐11a‐methyl‐4,4a,11,11a‐tetrahydro‐1H‐benzo­[b]­fluoren‐11‐one

The title compound, C₁₉H₁₆O, crystallizes with two mol­ecules of opposite chirality in the asymmetric unit. In both mol­ecules, the naphthalene and cyclo­pentanone moieties are individually planar. The two cyclo­pentane rings adopt envelope conformations, while the cyclo­hexane ring adopts a boat conformation.