Cyclo­decyl 4‐nitro­phenyl­acetate

Cyclodecyl 4‐nitrophenylacetate, C₁₈H₂₅NO₄, has its ten‐membered ring in the expected diamond‐lattice boat–chair–boat [2323] conformation, with the substituent 4‐nitro­phenyl­acet­oxy group in the BCB IIIe position. The ester unit has the expected Z conformation, with an O=C—O—C torsion angle of −0.3 (3)°, and the connection to the benzene ring is nearly perpendicular to the ester, with an O=C—C—C torsion angle of 85.5 (2)°. An inter­molecular contact exists between the ester C atom and a nitro O atom, having a C⋯O distance of 2.909 (2) Å.     

(2S,RS)‐6‐Phenyl‐1‐(p‐tolyl­sulfinyl)­hexa‐3(E),5(E)‐dien‐2‐ol

The mol­ecule of the title compound, C₁₉H₂₀O₂S, corresponds to a chiral sulfinyldienol with two stereogenic centres, viz. the C atom susbtituted by the hydr­oxy group and the sulfinyl S atom. The mol­ecule displays a V‐shape in the solid state. The dihedral angle defined by the least‐squares planes of the aromatic rings is 72.9 (1)°. The packing pattern exhibits the following inter­molecular hydrogen bonds: one O—H⋯O [H⋯O = 1.98 Å, O⋯O = 2.785 (4) Å and O—H⋯O = 166°] and two C—H⋯O [H⋯O = 2.58 and 2.60 Å, C⋯O = 3.527 (5) and 3.347 (5) Å, and C—H⋯O = 164 and 134°]. These define a chain along b.     

4‐Fluoro‐2‐(phospho­no­methyl)­benzene­sulfonic acid monohydrate

The title compound, C₇H₈FO₆PS·H₂O, contains both phospho­nic and sulfonic acid functionalities. An extensive network of O—H?O hydrogen bonds is present in the crystal structure. The three acidic protons are associated with the phospho­nate group. Two protons experience typical hydrogen‐bond contacts with the sulfonate‐O atoms, while the third has a longer covalent bond of 1.05 (3) Å to the phospho­nate‐O atom and a short hydrogen‐bond contact of 1.38 (3) Å to the water O atom (all O—H?O angles are in the range 162–175°). The sulfonate group is positioned so that one S—O bond is nearly coplanar with the phenyl ring [torsion angle O—S—C—C ?8.6 (2)°]. The phospho­nate group is oriented approximately perpendicular to the ring [torsion angle P—C—C—C 99.2 (2)°] with one P—O bond anti to the benzyl C—C bond. The mol­ecules pack in layers in the b–c plane with the water mol­ecules in between adjacent pairs of inverted layers.     

Azin­yl sulfides. LXXXI. 14‐Phen­yl‐7‐thia­pyrano[2,3‐c;6,5‐c′]diquinoline‐14‐carbonitrile

The mol­ecules of the title compound, C₂₆H₁₅N₃S, have a penta­cyclic ring system which is almost planar, with the central ring in a flattened boat conformation. The folding angle between the two quinoline rings is 6.75 (7)°. The 14‐phen­yl substituent is in a quasi‐axial conformation, while the 14‐cyano substituent is in a quasi‐equatorial conformation with respect to the thio­pyran ring. The S⋯C—C_phen­yl and S⋯C—C_CN angles are 116.8 (2) and 129.3 (2)°, respectively. The plane of the phen­yl group is nearly coplanar with the plane bis­ecting the dihedral angle of the penta­cyclic ring system.     

Two N‐substituted 3,5‐diphenyl‐2‐pyrazoline‐1‐thiocarboxamides

The structures of N‐ethyl‐3‐(4‐fluoro­phen­yl)‐5‐(4‐methoxy­phen­yl)‐2‐pyrazoline‐1‐thio­carboxamide, C₁₉H₂₀FN₃OS, (I), and 3‐(4‐fluoro­phen­yl)‐N‐methyl‐5‐(4‐methyl­phen­yl)‐2‐pyrazoline‐1‐thio­carboxamide, C₁₈H₁₈FN₃S, (II), have similar geometric parameters. The meth­oxy/methyl‐substituted phenyl groups are almost perpendicular to the pyrazoline (pyraz) ring [inter­planar angles of 89.29 (8) and 80.39 (10)° for (I) and (II), respectively], which is coplanar with the fluoro­phenyl ring [inter­planar angles of 5.72 (9) and 10.48 (10)°]. The pyrazoline ring approximates an envelope conformation in both structures, with the two‐coordinate N atom involved in an intra­molecular N—H⋯N_pyraz inter­action. In (I), N—H⋯O and C—H⋯S inter­molecular hydrogen bonds are the primary inter­actions, whereas in (II), there are no intermolecular hydrogen bonds.     

1‐(1H‐Indol‐3‐ylcarbonyl)‐N‐(4‐methoxy­benzyl)formamide

In the title compound, C₁₈H₁₆N₂O₃, the indole ring is planar and the two adjacent carbonyl groups are mutually trans oriented with a torsion angle of 144.8 (3)°. The single C—C bond linking the two carbonyl functionalities is 1.539 (4) Å. Mol­ecules are linked into a two‐dimensional network by inter­molecular N—H⋯O hydrogen bonds.     

5‐Methyl‐2′‐deoxy‐4′‐thio‐α‐uridine (R)‐­S‐oxide

The pyrimidine ring of the title compound, C₁₀H₁₄N₂O₅S, is planar to within 0.024 (1) Å and makes an angle of 75.46 (10)° with the mean plane of the thio­sugar ring. In terms of standard nucleoside nomenclature, this ring has the C3′‐endo conformation. The O5′—C5′—C4′—C3′ torsion angle is 166.5 (3)° and the glycosidic torsion angle S4′—C1′—N1—C2 is ?52.1 (2)° (syn).     

S‐(4‐Nitrophenyl) 4‐nitrobenzenethiosulfonate

The title compound, C₁₂H₈N₂O₆S₂, (I), is a positional isomer of S‐(2‐nitrophenyl) 2‐nitrobenzenethiosulfonate [Glidewell, Low & Wardell (2000). Acta Cryst. B 56 , 893–905], (II). The most obvious difference between the two isomers is the rotation of the nitro groups with respect to the planes of the adjacent aryl rings. In (I), the nitro groups are only slightly rotated out of the plane of the adjacent aryl ring [2.4 (6) and 6.7 (7)°], while in (II) the nitro groups are rotated by between 37 and 52°, in every case associated with S—S—C—C torsion angles close to 90°. Other important differences between the isomers are the C—S—S(O₂)—C torsion angle [78.39 (2)° for (I) and 69.8 (3)° for (II) (mean)] and the dihedral angles between the aromatic rings [12.3 (3)° for (I) and 28.6 (3)° for (II) (mean)]. There are two types of C—H...O hydrogen bond in the structure [C...O = 3.262 (7) Å and C—H...O = 144°; C...O = 3.447 (7) Å and C—H...O = 166°] and these link the molecules into a two‐dimensional framework. The hydrogen‐bond‐acceptor properties differ between the two isomers.     

Three N2‐benzoyl­oxybenz­amidines: sheet structures built from hard and soft hydrogen bonds and aromatic π–π stacking interactions

Molecules of the title compounds N²‐(benzoyl­oxy)­benz­ami­dine, C₁₄H₁₂N₂O₂, (I), N²‐(2‐hydroxy­benzoyl­oxy)­benz­ami­dine, C₁₄H₁₂N₂O₃, (II), and N²‐benzoyloxy‐2‐hydroxybenzamidine, C₁₄H₁₂N₂O₃, (III), all have extended chain conformations, with the aryl groups remote from one another. In (I), the mol­ecules are linked into chains by a single N—H⋯N hydrogen bond [H⋯N = 2.15 Å, N⋯N = 3.029 (2) Å and N—H⋯N = 153°] and these chains are linked into sheets by means of aromatic π–π stacking interactions. There is one intramolecular O—H⋯O hydrogen bond in (II), and a combination of one three‐centre N—H⋯(N,O) hydrogen bond [H⋯N = 2.46 Å, H⋯O = 2.31 Å, N⋯N = 3.190 (2) Å, N⋯O = 3.146 (2) Å, N—H⋯N = 138° and N—H⋯O = 154°] and one two‐centre C—H⋯O hydrogen bond [H⋯O = 2.46 Å, C⋯O = 3.405 (2) Å and C—H⋯O = 173°] links the mol­ecules into sheets. In (III), an intramolecular O—H⋯N hydrogen bond and two N—H⋯O hydrogen bonds [H⋯O = 2.26 and 2.10 Å, N⋯O = 2.975 (2) and 2.954 (2) Å, and N—H⋯O = 138 and 163°] link the molecules into sheets.     

7‐Deaza‐2′‐deoxy­guanosine

In the title compound, 2‐amino‐7‐(2‐deoxy‐β‐d ‐erythro‐pentofuran­osyl)‐3,7‐dihydro­pyrrolo[2,3‐d]pyrimidin‐4‐one, C₁₁H₁₄N₄O₄, the N‐glycosylic bond torsion angle, χ, is anti [−106.5 (3)°]. The 2′‐deoxy­ribofuran­osyl moiety adopts the ³T₄ (N‐type) conformation, with P = 39.1° and τ_m = 40.3°. The conformation around the exocyclic C—C bond is ap (trans), with a torsion angle, γ, of −173.8 (3)°. The nucleoside forms a hydrogen‐bonded network, leading to a close‐packed multiple‐layer structure with a head‐to‐head arrangement of the bases. The nucleobase interplanar O=C—C⋯NH₂ distance is 3.441 (1) Å.     

Conformational preferences in 2‐­nitrophenylthiolates: S‐(2‐nitro­phenyl) 4‐toluenethiosulfonate

In the title compound, C₁₃H₁₁NO₄S₂, the nitro group is rotated by 44.1 (1)° out of the plane of the adjacent aryl ring and the toluene­thio­sulfonate group is almost orthogonal to the plane of the nitrated aryl ring. There are three types of C—H?O hydrogen bond in the structure [C?O range 3.324 (3)–3.503 (3) Å; C—H?O range 160–173°] and these link the mol­ecules into a three‐dimensional framework.     

N,N′‐Bis(2‐pyridyl)benzene‐1,2‐diamine

Hindered rotation about the partial double C—N bonds between the amine and pyridine moieties in the title mol­ecule, C₁₆H₁₄N₄, results in two different conformations of the N‐aryl‐2‐amino­pyridine units. One, assuming an E conformation, is involved in a pair of N—H⋯N hydrogen bonds that generate a centrosymmetric (8) motif. The second, adopting a Z conformation, is not engaged in any hydrogen bonding and is flattened, the dihedral angle between the benzene and pyridine rings being 12.07 (7)°. This conformation is stabilized by an intramolecular C—H⋯N interaction [C⋯N = 2.9126 (19) Å, H⋯N = 2.31 Å and C—H⋯N = 120°].     

(E)‐2‐[2‐(1‐Naphthyl)­vinyl]‐3‐tosyl‐2,3‐di­hydro‐1,3‐benzo­thia­zole

The title compound, C₂₆H₂₁NO₂S₂, which consists of a benzo­thia­zole skeleton with α‐naphthyl­vinyl and tosyl groups at positions 2 and 3, respectively, was prepared by palladium–copper‐catalyzed heteroannulation. The E configuration of the mol­ecule about the vinyl C=C bond is established by the benzothiazole–naphthyl C—C—C—C torsion angle of 177.5 (4)°. The five‐membered heterocyclic ring adopts an envelope conformation with the Csp³ atom 0.380 (6) Å from the C₂NS plane. The two S—C [1.751 (4) and 1.838 (4) Å] and two N—C [1.426 (5) and 1.482 (5) Å] bond lengths in the thia­zole ring differ significantly.     

5‐Ethyl‐2′‐deoxy‐4′‐thiouridine (R)‐S‐oxide monohydrate

The pyrimidine ring of the title compound, C₁₁H₁₆N₂O₅S·H₂O, is planar to within 0.026 (1) Å and makes an angle of 77.73 (8)° with the mean plane of the thiosugar ring. In terms of standard nucleoside nomenclature, this ring has a C1′‐exo,C2′‐endo conformation. The O5′—C5′—C4′—C3′ torsion angle is ?167.4 (2)° and the glycosidic S4′—C1′—N1—C2 torsion angle is ?101.8 (2)° (anti).     

2′‐De­oxy‐2‐fluoro­tubercidin

In the title compound [systematic name: 7‐(2‐de­oxy‐β‐d ‐erythro‐pentofuranos­yl)‐2‐fluoro‐7H‐pyrrolo[2,3‐d]pyrimidin‐2‐amine], C₁₁H₁₃FN₄O₃, the conformation of the N‐glycosylic bond is between anti and high‐anti [χ = −110.2 (3)°]. The 2′‐deoxy­ribofuranosyl unit adopts the N‐type sugar pucker (₄T³), with P = 40.3° and τ_m = 39.2°. The orientation of the exocyclic C4′—C5′ bond is −ap (trans), with a torsion angle γ = −168.39 (18)°. The nucleobases are arranged head‐to‐head. The crystal structure is stabilized by four inter­molecular hydrogen bonds of types N—H⋯N, N—H⋯O and O—H⋯O.     

Four (E,Z,E)‐1‐(4‐alkoxy­phen­yl)‐6‐(4‐nitro­phen­yl)hexa‐1,3,5‐trienes

The crystal structures of the four E,Z,E isomers of 1‐(4‐alk­oxy­phen­yl)‐6‐(4‐nitro­phen­yl)hexa‐1,3,5‐triene, namely (E,Z,E)‐1‐(4‐methoxy­phen­yl)‐6‐(4‐nitro­phen­yl)hexa‐1,3,5‐triene, C₁₉H₁₇NO₃, (E,Z,E)‐1‐(4‐ethoxy­phen­yl)‐6‐(4‐nitro­phen­yl)hexa‐1,3,5‐triene, C₂₀H₁₉NO₃, (E,Z,E)‐1‐(4‐nitro­phen­yl)‐6‐(4‐n‐propoxyphen­yl)hexa‐1,3,5‐triene, C₂₁H₂₁NO₃, and (E,Z,E)‐1‐(4‐n‐butoxy­phen­yl)‐6‐(4‐nitro­phen­yl)hexa‐1,3,5‐triene, C₂₂H₂₃NO₃, have been determined. Inter­molecular N⋯O dipole inter­actions between the nitro groups are observed for the meth­oxy derivative, while for the eth­oxy derivative, two adjacent mol­ecules are linked at both ends through N⋯O dipole–dipole inter­actions between the N atom of the nitro group and the O atom of the eth­oxy group to form a supra­molecular ring‐like structure. In the crystal structures of the n‐prop­oxy and n‐but­oxy derivatives, the shortest inter­molecular distances are those between the two O atoms of the alk­oxy groups. Thus, the nearest two mol­ecules form an S‐shaped supra­molecular dimer in these crystal structures.     

Chalcone epoxide inter­mediates in the syntheses of lignin‐related phenyl­coumarans

Compounds (2R*,3S*)‐1‐(3,4‐dimethoxy­phen­yl)‐3‐{3‐meth­oxy‐2‐[(2R*)‐tetra­hydro­pyran‐2‐yl­oxy]phen­yl}‐2,3‐ep­oxy‐1‐propanone, C₂₃H₂₆O₇, (I), and trans‐1‐(3,4‐dimethoxy­phen­yl)‐3‐[3‐meth­oxy‐2‐(methoxy­methoxy)­phen­yl]‐2,3‐ep­oxy‐1‐propanone, C₂₀H₂₂O₇, (II), were obtained on epoxidation of chalcones. The stereochemistries of (I) and (II) were elucidated. In both compounds, the substituents on the oxirane ring are trans‐oriented. Compound (I) was obtained together with a diastereometric form that differs from (I) with respect to the configuration of the asymmetric C atom in the tetra­hydro­pyran group. The geometries of the substituted oxirane rings of (I) and (II) are very similar. The hydrogen‐bonding patterns, mediated via weak C—H⋯O inter­actions, differ considerably. The crystal structures of (I) and (II) are compared with those of related chalcone epoxides. The conversion of (I) and (II) into lignin‐related phenyl­coumarans is discussed.     

1,3‐Bis(4‐nitro­phenyl)­triazene

The structure of the title compound, C₁₂H₉N₅O₄, reveals an almost planar mol­ecule (r.m.s. deviation = 0.061 Å), in which the interplanar angle between the phenyl rings is 5.7 (1)° and the largest interplanar angle is that between the phenyl ring and the nitro group of one of the 4‐nitro­phenyl substituents [8.8 (3)°]. The observed mol­ecular conformation suggests a delocalization of π‐electrons extended over the diazo­amine group and the terminal aryl substituents. Intermolecular N—H⃛O interactions between the twofold screw‐related mol­ecules give rise to helical chains along the [010] direction. Intermolecular C—H⃛O interactions then generate sheets of mol­ecules in the (10) plane, and these sheets are held together by N⃛C and O⃛O π–π interactions.     

3,7‐Dibromohinokitiol: a redetermination

The structure of the title compound (systematic name: 3,7‐di­bromo‐2‐hydroxy‐6‐iso­propyl­cyclo­hepta‐2,4,6‐trien‐1‐one), C₁₀H₁₀Br₂O₂, previously described by Ito, Fukazawa & Iitaka [Tetrahedron Lett. (1972), 13 , 745–749], has been redetermined. Strong inter‐ and intramolecular hydrogen bonds, with H...O distances of 2.17 (9) and 2.06 (6) Å, respectively, are observed. There are also two short Br...Br and two short Br...(ring centroid) interactions. Important dimensions include C—O(carbonyl) = 1.252 (5) Å, C—O(hydroxyl) = 1.355 (5) Å, C—Br(3‐position) = 1.904 (4) Å and C—Br(7‐­position) = 1.905 (4) Å, and an O—C—C—O ring torsion angle of −6.7 (6)°.     

Ethyl 3‐(2′‐deoxyuridin‐5‐yl)‐3‐hydroxy‐2‐iodopropanoate,a ­nucleoside analogue

In the title compound, C₁₄H₁₉IN₂O₈, an almost planar heterocyclic base is oriented anti with respect to the puckered sugar moiety. The sugar pucker is C2′‐endo/C3′‐exo, the N‐glycosidic torsion angle is 166.4 (4)° and the conformation of O5′ is +sc. The mol­ecules are linked by hydrogen bonds of the types N—H?O and O—H?O.