4‐Amino‐5‐(2‐hydroxy‐4,4‐di­methyl‐6‐oxo­cyclo­hexenyl­methyl)‐1‐methyl‐2‐(methyl­sulfanyl)­pyrimidin‐6(1H)‐one: hydrogen‐bonded chains are π‐stacked in pairs

Molecules of the title compound, C₁₅H₂₁N₃O₃S, have a markedly polarized electronic structure; the carbocyclic ring adopts an envelope conformation and the overall molecular conformation appears to be controlled by two intramolecular hydrogen bonds, one each of the O—H⋯O and N—H⋯O types. The mol­ecules are linked into C(6) chains by an intermol­ecular N—H⋯O hydrogen bond, and pairs of these hydrogen‐bonded chains are linked by a π–π stacking interaction.     

cis‐Diaqua­[(E)‐2‐(2‐oxidobenzyl­idene­amino‐κ2N,O)­benzoato‐κO]copper(II): tubes built from O—H⋯O hydrogen‐bonding, π–π and C—H⋯π inter­actions

In the title compound, [Cu(C₁₄H₉NO₃)(H₂O)₂], which crystallizes with Z = 18 in the space group R, pairs of complexes are linked into dimers by three O—H⋯O hydrogen bonds. Strong O—H⋯O hydrogen bonds link the dimers into one‐dimensional chains that further assemble into tubes through π–π and C—H⋯π inter­actions.     

Hydrogen bonding and π–π stacking in 6‐hydroxy­biochanin A monohydrate

In the lattice of the title compound (systematic name: 5,6,7‐trihydroxy‐4′‐meth­oxy­isoflavone monohydrate), C₁₆H₁₂O₆·H₂O, the isoflavone mol­ecules are linked into chains through R₄³(17) motifs composed via O—H⋯O and C—H⋯O hydrogen bonds. Centrosymmetric R₄²(14) motifs assemble the chains into sheets. Hydrogen‐bonding and aromatic π–π stacking inter­actions lead to the formation of a three‐dimensional network structure.     

Head‐to‐head dimers in the zwitterion of 1‐hydroxy‐1‐phosphono‐3‐(1‐piperidino)propylidene‐1‐phosphonate (PHPBP)

The title compound, C₈H₁₉NO₇P₂, is a member of the bis­phosphonate family of therapeutic compounds. PHPBP has inner‐salt character, consisting of a negatively charged PO₃ group and a positively charged N atom. The six‐membered piperidine ring adopts an almost‐perfect chair conformation. The hydroxyl group and the N atom have gauche and trans conformations in relation to the O—C—C—C—N backbone, respectively. Hydrogen bonding is the main contributor to the packing in the crystal, which consists of head‐to‐head dimers formed through phosphonyl–phosphonyl hydrogen bonds, while O—H⋯O and N—H⋯O interactions join the dimers into a plane parallel to crystallographic b and c axes.     

7,8‐Dihydr­oxy‐4‐propyl‐1,2,3,4,4a,5,6,10b‐octa­hydro­benzo[f]quinolinium bromide monohydrate,a dopamine agonist

In the crystal structure of the title dopamine­rgic compound, C₁₆H₂₄NO₂⁺·Br⁻·H₂O, protonation occurs at the piperidine N atom. The piperidine ring adopts a chair conformation and the cyclo­hexene ring adopts a half‐chair conformation; together with the planar benzene ring, this results in a relatively planar shape for the whole mol­ecule. Classical hydrogen bonds (N—H⋯Br, O—H⋯Br and O—H⋯O) produce an infinite three‐dimensional network. Hydrogen bonds between water ­mol­ecules and Br⁻ anions create centrosymmetric rings throughout the crystal structure. Structural comparison of the mol­ecule with the ergoline dopamine agonist pergolide shows that it is the hydrogen‐bond‐forming hydr­oxy or imino group that is necessary for dopamine­rgic activity, rather than the presence of a phenyl or a pyrrole ring per se.     

(Benzo­furan‐2‐yl)(3‐methyl‐3‐phenyl­cyclo­butyl)­methanone

The structure of the title compound, C₂₀H₁₈O₂, consists of a dimeric arrangement of benzo­furan mol­ecules around an inversion centre, linked via C—H⋯O hydrogen bonds. There are also C—H⋯π ring interactions. All these interactions result in the formation of infinite chains parallel to the [100] axis. The cyclo­butane ring is puckered, with a dihedral angle of 29.03 (13)° between the two three‐atom planes.     

2,3‐Difluoro‐4‐formyl­phenyl­boronic acid

The mol­ecule of the title compound, 2,3‐F₂‐4‐(CHO)C₆H₂B(OH)₂ or C₇H₅BF₂O₃, contains a formyl group coplanar with the benzene ring. The boronic acid group is twisted with respect to the benzene ring plane. The mol­ecules are organized into infinite chains via inter­molecular O—H⋯O hydrogen bonds. These chains are additionally connected via strong O—H⋯O hydrogen bonds, producing a folded layer structure perpendicular to the a axis. These layers are paired due to B⋯F inter­actions.     

Displaced π–π stacking and hydrogen bonds in 3‐bromo‐N‐(2‐hydroxy‐1,1‐di­methyl­ethyl)­benz­amide

The mol­ecules of the title compound, C₁₁H₁₄BrNO₂, are assembled into a two‐dimensional network by a combination of hydrogen bonds and stacking interactions. The phenyl rings are stacked along the c direction by displaced π–π interactions, forming a lipophilic layer. The aliphatic amide residues are interconnected along [100] by O—H⋯O, N—H⋯O and C—H⋯O hydrogen bonds, forming hydro­philic layers.     

ent‐7α,18‐Hydroxy­kaur‐16‐ene ethanol solvate

The ent‐kaurene diterpene in the title compound, 7‐epican­dicandiol ethanol solvate, C₂₀H₃₂O₂·C₂H₆O, was isolated from the aerial parts of Sideritis ozturkii Aytaç & Aksoy. The mol­ecule has the usual conformation and stereochemistry found in related ent‐kaurene derivatives. The methyl‐substituted ring junction has a trans arrangement and the other junction is cis. The six‐membered rings have chair or slightly distorted chair conformations and the five‐membered ring has an envelope conformation. Inter­molecular hydrogen bonds link the 7‐epicandicandiol and ethanol mol­ecules into two‐dimensional networks, part of which comprise co‐operative O—H⋯O—H⋯O—H⋯ chains.     

1‐(1‐Amino‐4‐bromo‐9,10‐dioxo‐9,10‐dihydro­anthracen‐2‐ylcarbon­yl)‐1,3‐dicyclo­hexyl­urea

In the title compound, C₂₈H₃₀BrN₃O₄, the mol­ecules are linked by C—H⋯Br and N—H⋯O hydrogen bonds into one‐dimensional chains, which are arranged into a three‐dimensional network through a combination of C—H⋯O hydrogen bonds and two kinds of π–π inter­actions between the benzene rings of the anthraquinone units.     

2‐[6‐(3‐Chloro­phenyl)‐2,4‐dioxoperhydro­pyrimidin‐3‐yl]­ethyl morpholine‐4‐carbodi­thioate

In the title compound, C₁₇H₂₀ClN₃O₃S₂, the hexa­hydro­pyrimidine ring is puckered, the total puckering amplitude Q_T being 0.41 (1) Å. The morpholine ring displays orientational disorder. Molecules are linked in the crystal via N—H⋯O and C—H⋯O interactions to form infinite chains.     

Three N2‐benzoyl­oxybenz­amidines: sheet structures built from hard and soft hydrogen bonds and aromatic π–π stacking interactions

Molecules of the title compounds N²‐(benzoyl­oxy)­benz­ami­dine, C₁₄H₁₂N₂O₂, (I), N²‐(2‐hydroxy­benzoyl­oxy)­benz­ami­dine, C₁₄H₁₂N₂O₃, (II), and N²‐benzoyloxy‐2‐hydroxybenzamidine, C₁₄H₁₂N₂O₃, (III), all have extended chain conformations, with the aryl groups remote from one another. In (I), the mol­ecules are linked into chains by a single N—H⋯N hydrogen bond [H⋯N = 2.15 Å, N⋯N = 3.029 (2) Å and N—H⋯N = 153°] and these chains are linked into sheets by means of aromatic π–π stacking interactions. There is one intramolecular O—H⋯O hydrogen bond in (II), and a combination of one three‐centre N—H⋯(N,O) hydrogen bond [H⋯N = 2.46 Å, H⋯O = 2.31 Å, N⋯N = 3.190 (2) Å, N⋯O = 3.146 (2) Å, N—H⋯N = 138° and N—H⋯O = 154°] and one two‐centre C—H⋯O hydrogen bond [H⋯O = 2.46 Å, C⋯O = 3.405 (2) Å and C—H⋯O = 173°] links the mol­ecules into sheets. In (III), an intramolecular O—H⋯N hydrogen bond and two N—H⋯O hydrogen bonds [H⋯O = 2.26 and 2.10 Å, N⋯O = 2.975 (2) and 2.954 (2) Å, and N—H⋯O = 138 and 163°] link the molecules into sheets.     

(Z)‐1‐Ferrocenyl‐3‐(3‐hydroxy­anilino)­but‐2‐en‐1‐one and (Z)‐1‐ferrocenyl‐3‐(4‐hydroxy­anilino)­but‐2‐en‐1‐one

The title compounds, both [Fe(C₅H₅)(C₁₅H₁₄NO₂)], crystallize with Z′ = 2 in the centrosymmetric space group P. In each compound, there is an intra­molecular N—H⋯O=C hydrogen bond, and pairs of inter­molecular O—H⋯O=C hydrogen bonds link the mol­ecules into chains, parallel to [10] in the 3‐hydr­oxy compound and parallel to [10] in the 4‐hydr­oxy compound.     

2‐Hydroxy‐3‐(3‐oxobut­yl)naphthalene‐1,4‐dione

The title compound, C₁₄H₁₂O₄, forms crystals which appear monoclinic but are actually twinned triclinic. The asymmetric unit consists of two similar mol­ecules, which differ only in the conformation of the 3‐oxobutyl side chain. The mol­ecular conformation is characterized by an intra­molecular O—H⋯O hydrogen bond between the hydroxy group and the adjacent carbonyl O atom. The crystal structure is stabilized by O—H⋯O hydrogen bonds connecting the mol­ecules into zigzag chains running along the b axis.     

Salicylaldehyde 4,4′‐(hexane‐1,6‐di­yl)­thio­semicarbazone

The title compound, C₁₄H₁₉N₃OS, is in the thio­keto form, with the thione S and hydrazine N atoms cis with respect to each other so that the S atom is involved in inter‐ and intra­molecular hydrogen bonds simultaneously. Inter­molecular C—H⋯S and C—H⋯O hydrogen bonds result in one‐dimensional polymeric chains of mol­ecules along the a axis. A weak C—H⋯π ring inter­action binds the polymeric chains together.     

3‐Bromo­methyl‐3‐ethyl‐3,4,6,7,8,8a‐hexa­hydro‐1H‐pyrrolo­[2,1‐c][1,4]­oxazine‐1,4‐dione

In the title compound, C₁₀H₁₄BrNO₃, the six‐membered lactone ring is in a boat conformation, with the two carbonyl groups cis to one another across the boat basal plane. C—H⋯O hydrogen bonds and weak C—H⋯Br interactions stabilize the crystal structure.     

2′‐(4‐Fluoro­phenyl)‐[1,2,3]­triazolo[4′,5′:16,17]­androst‐5‐en‐3β‐ol methanol hemisolvate

The asymmetric unit of the title compound, C₂₅H₃₀FN₃O·0.5CH₃OH, contains four symmetry‐independent steroid and two methanol mol­ecules. The conformations of the independent steroid mol­ecules are very similar. Intermolecular O—H⋯O hydrogen bonds create two independent chains, each of which links two of the independent steroid mol­ecules plus one methanol mol­ecule via a co‐operative O—H⋯O—H⋯O—H pattern. Intermolecular C—H⋯O and C—H⋯F interactions are also observed.     

Hydro­gen‐bonded supramolecular motifs in 4,4′‐bipyridinium 8‐hydroxy‐7‐iodo­quinoline‐5‐sulfonate dihydrate

In the title compound, C₁₀H₉N₂⁺·C₉H₅INO₄S⁻·2H₂O, the 4,4′‐bi­pyridine mol­ecule is protonated at one of the pyridine N atoms. These moieties self‐assemble into a supramolecular chain along the a axis through N—H⋯N hydrogen bonds. The quinolinol OH group acts as a donor with respect to a sulfonate O atom [O—H⋯O(sulfonate)] and acts as an acceptor with respect to a C—H group of ferron [C—H⋯O(hydroxy)], forming a supramolecular chain along the b axis. These two types of supramolecular chains (one type made up of bi­pyridine motifs and the other made up of sulfoxine motifs) interact viaπ–π stacking, generating a three‐dimensional framework. These chains are further crosslinked by C—­H⋯O hydrogen bonds and O—H⋯O hydrogen bonds involving water mol­ecules.     

Hydrogen bonding in nitroaniline analogues: hydrogen‐bonded sheets in 2‐amino‐4,6‐dimethoxy‐5‐nitropyrimidine and π‐stacked hydrogen‐bonded sheets in 4‐amino‐2,6‐dimethoxy‐5‐nitropyrimidine

In 2‐amino‐4,6‐di­methoxy‐5‐nitro­pyrimidine, C₆H₈N₄O₄, the mol­ecules are linked by one N—H⋯N and one N—H⋯O hydrogen bond to form sheets built from alternating R(8) and R(32) rings. In isomeric 4‐amino‐2,6‐di­methoxy‐5‐nitro­pyrimidine, C₆H₈N₄O₄, which crystallizes with Z′ = 2 in P, the two independent mol­ecules are linked into a dimer by two independent N—H⋯N hydrogen bonds. These dimers are linked into sheets by a combination of two‐centre C—H⋯O and three‐centre C—H⋯(O)₂ hydrogen bonds, and the sheets are further linked by two independent aromatic π–π‐stacking interactions to form a three‐dimensional structure.     

N,N′‐Bis(2‐methoxy­phenyl)­naphthalene‐1,4‐dicarboxamide

The title compound, C₂₆H₂₂N₂O₄, crystallizes in an anti‐C=O orientation, with the two N‐substituted benzene rings in different conformations relative to the naphthalene ring. These conformations allow two strong N—H⋯O hydrogen bonds and one C—H⋯π inter­action to generate mol­ecular chains in the cell.