A binary hydrogen bonding motif based on homochiral recognition: crystal structures and hydrogen bonding networks of meso-(R,S)-bis(trifluorolactate)s

A series of meso-compounds incorporating both enantiomers of a trifluorolactate constructed two-dimensional supramolecular sheets via homochiral hydrogen bonding chains as a binary hydrogen bonding motif.     

Supramolecular double helix from capped γ-peptide

The single crystal X-ray diffraction study of capped γ-peptide reveal that the peptide adopts helical conformation which self-assemble to form a supramolecular parallel double helical structure using intermolecular hydrogen bonding as well as π-π stacking interactions in the solid state.     

New insights into the transitional behaviour of methyl-6-O-(n-dodecanoyl)-α-D-glucopyranoside using variable temperature FTIR spectroscopy and X-ray diffraction

The liquid crystalline behaviour of methyl-6-O-(n-dodecanoyl)-α-D-glucopyranoside, 1, has been characterised using X-ray diffraction and variable temperature Fourier transform infrared (FTIR spectroscopy). 1 exhibits a monotropic interdigitated smectic A phase consisting of bilayers in which the alkyl chains are overlapped. The crystal–isotropic transition is accompanied by a pronounced decrease in the strength of the hydrogen bonding network involving the sugar groups resulting in a marked change in the environment of the alkyl chains. The isotropic phase consists of disordered smectic-like domains stabilised via hydrogen bonding between the sugar groups. At the transition to the smectic A phase, a subtle change in hydrogen bonding is observed which is manifested by a change in the temperature dependence of the OH stretching peak position in the FTIR spectrum. On crystallisation, the strong hydrogen bonding network is re-established accompanied by a change in the conformational distribution of the alkyl chains. A model is proposed in which a combination of hydrogen bonding (enthalpic effects) and conformational arrangements (entropic effects) promotes initially the formation of smectic-like domains in the isotropic phase and subsequently stabilises the smectic A phase by inhibiting the microphase separation leading to the crystal phase.     

Polymorphism of N,N'-diacetylbiuret studied by solid-state 13C and 15N NMR spectroscopy, DFT calculations, and X-ray diffraction

The molecular configuration and crystal structure of solid polycrystalline N,N′′‐diacetylbiuret (DAB), a potential nitrogen‐rich fertilizer, have been analyzed by a combination of solid‐ and liquid‐state NMR spectroscopy, X‐ray diffraction, and DFT calculations. Initially a pure NMR study (“NMR crystallography”) was performed as available single crystals of DAB were not suitable for X‐ray diffraction. Solid‐state ¹³C NMR spectra revealed the unexpected existence of two polymorphic modifications (α‐ and β‐DAB) obtained from different chemical procedures. Several NMR techniques were applied for a thorough characterization of the molecular system, revealing chemical shift anisotropy (CSA) tensors of selected nuclei in the solid state, chemical shifts in the liquid state, and molecular dynamics in the solid state. Dynamic NMR spectroscopy of DAB in solution revealed exchange between two different configurations, which raised the question, is there a correlation between the two different configurations found in solution and the two polymorphic modifications found in the solid state? By using this knowledge, a new crystallization protocol was devised which led to the growth of single crystals suitable for X‐ray diffraction. The X‐ray data showed that the same symmetric configuration is present in both polymorphic modifications, but the packing patterns in the crystals are different. In both cases hydrogen bonds lead to the formation of planes of DAB molecules. Additional symmetry elements, a two‐fold screw in the case of α‐DAB and a c‐glide plane in the case of β‐DAB, lead to a more symmetric (α‐DAB) or asymmetric (β‐DAB) intermolecular hydrogen‐bonding pattern for each molecule.     

Correlation of crystal parameters with vibrational data of tetramethylammonium fluorocompounds

Examination of the solid state infrared spectra of the tetramethylammonium cation in ten salts shows correlation of infrared spectral properties with C-H…X hydrogen bonding and crystal habits in these tetramethylammonium salts. In this research a number of complexes of tetramethylammonium cation have been synthesized and the structures of five of them have been analyzed by X-ray single crystal diffraction. The IR predicted crystal habits are comprised by XRD data. The C-H stretching region characteristic hydrogen bonding shifts in the above salts. A good relation between two data has been found.     

Hydrogen bond directed formation of liquid-crystalline merocyanine dye assemblies

Combined interaction of triple hydrogen bonding, dipolar pi-pi aggregation and micro-segregation in a melamine-barbituric acid dye assembly leads to a columnar mesophase which could be characterized by optical polarising microscopy, differential scanning calorimetry and X-ray diffraction.     

Synthesis and Structure of a Novel Supramolecular Compound [Co(2,2''-bipy)(H2 O)4 ][trans-1,4-chdc] and Separation of Isomer of 1,4-Cyclohexanedicarboxylic Acid

A supramolecular compound, [Co(2,2'-bipy)(H2O)4][trans-1,4-chdc] (compound 1) (2,2'-bipy=2,2'-bipyridine, 1,4-chdcH2=1,4-cyclohexanedicarboxylic acid), was synthesized and characterized by single-crystal X-ray diffraction analysis, IR spectrometry, TG analysis, and elemental analyses. Single-crystal X-ray diffraction analysis revealed that [Co(2,2'-bipy)(H2O)4]2 units and adjacent 1,4-chdc2- formed a single layer by hydrogen bonding and electrostatic interactions along the ac-plane, and two symmetry-related single layers interacted with each other by hydrogen bonding, resulting in a double layer, which further formed a 3-D structure by π-π stacking. The most attractive structural feature of compound 1 is that 1,4-chdc2- possesses only trans-conformation although there are both cis- and trans-conformations in the raw material.     

Synthesis, structural characterization and conformational aspects of nostoclide analogues

The synthesis and structural analysis of a set of nostoclide analogues with potential herbicide activity is described. The influence of intra- and intermolecular hydrogen bonding, as well as other interactions on the conformation and packing of the compounds is thoroughly described using DFT calculations and single crystal X-ray diffraction analyses. All lactones exhibited the Z configuration as confirmed by NOESY experiments and by single crystal X-ray diffraction measurements.     

A study of the self-assembly of 2-deoxyguanosine 3 5-cyclic monophosphate, d(cGp), by CD and X-ray diffraction

2-Deoxyguanosine 3 5-cyclic monophosphate forms in water cholesteric and hexagonal columnar mesophases. The polymorphic behaviour and the structural building blocks of the liquid crystalline phases, as determined by optical microscopy, CD spectroscopy and X-ray diffraction, are comparable to those found with all the deoxyguanylates investigated so far (in particular with deoxuguanosine 5- and 3-monophosphate). The present results show that the formation of a stacked array of planar G-tetramers, a necessary condition for the existence of the columnar mesophases, occurs even in the absence of hydrogen bonding groups linking the molecules along the length of the columns.     

Supramolecular helix and β-sheet through self-assembly of two isomeric tetrapeptides in crystals and formation of filaments and ribbons in the solid state

Single crystal X-ray diffraction studies show that the β-turn structure of tetrapeptide I, Boc-Gly-Phe-Aib-Leu-OMe (Aib: α-amino isobutyric acid) self-assembles to a supramolecular helix through intermolecular hydrogen bonding along the crystallographic a axis. By contrast the β-turn structure of an isomeric tetrapeptide II, Boc-Gly-Leu-Aib-Phe-OMe self-assembles to a supramolecular β-sheet-like structure via a two-dimensional (a, b axis) intermolecular hydrogen bonding network and π-π interactions. FT-IR studies of the peptides revealed that both of them form intermolecularly hydrogen bonded supramolecular structures in the solid state. Field emission scanning electron micrographs (FE-SEM) of the dried fibrous materials of the peptides show different morphologies, non-twisted filaments in case of peptide I and non-twisted filaments and ribbon-like structures in case of peptide II.     

Synthesis and crystal structure of a new Cd(II) coordination polymer with mixed Oba and TATP ligands (H<Subscript>2</Subscript>Oba = 4,4′-oxybis(benzoic acid), TATP = 1,4,8,9-tetranitrogen-trisphene)

A new coordination polymer, [Cd(Oba)(TATP) · H₂O(I) (Oba = anion of 4,4′-oxybis(benzoic acid), TATP = 1,4,8,9-tetranitrogen-trisphene), has been solvothermally synthesized and structurally characterized by IR, elemental analysis, and single crystal X-ray diffraction. Single-crystal X-ray diffraction reveals that I is an interesting 1D zigzag chain structure. The adjacent chains are further connected together via the strong π−π packing interactions and hydrogen bonding to form a 3D supramolecular framework.     

The first examples of supramolecular discotic C3h tris(N-salicylideneamine)s featuring inter- and intra-molecular H-bonding: synthesis and characterization

Supramolecular liquid crystalline tris(N-salicylideneamine)s (TSANs) featuring both inter- and intra-molecular hydrogen bonding have been synthesized and characterized for the first time. These TSANs formed by condensing 3 equiv of 3,4,5-trialkoxybenzoylhydrazine with 1,3,5-triformylphloroglucinol exist as the single C_3h-symmetric keto-enamine product solely, unlike the previously reported TSANs. Their self-assembly into supramolecular fluid hexagonal columnar phase over a wide thermal range is evidenced with the aid of optical microscopic, calorimetric, and powder X-ray diffraction techniques.     

Synthese, structure cristalline et spectres infrarouges de l''acide β-alanyl amino methyl phosphonique

β-Alanyl aminomethylphosphonic acid (β-ala AMPh) has been studied in the solid state by X-ray diffraction and vibration spectrometry. It crystallizes (space group P1&;#x0304; with Z = 4) as a zwitterion with, in the asymétrie unit, two independent molecules the conformations of which are quite different. The hydrogen bonding network is very complicated. Because the infrared spectra are very complicated, only a partial correlation of the vibrations of ammonium, amide and phosphonic groups is proposed.     

Amide-ligand hydrogen bonding in reverse micelles

One approach to modeling the second coordination shell of metalloproteins is to pair amide-containing counterions with metal complexes to form hydrogen bonds in the solid state. In a more general approach, we have designed a surfactant counterion that can sustain hydrogen bonding interactions with metal complexes in solution. The surfactant is cationic and incorporates an amide as part of its headgroup to form hydrogen. The surfactant forms hydrogen bonding reverse micelles that accommodate anionic metal complexes in their polar core. In reverse micelles containing an iron(III) hexacyanide complex, spectroscopic evidence suggests that the anion is confined to the polar core region in solution. Single-crystal X-ray diffraction data on the surfactant ferricyanide system reveals a layered structure with interdigitated alkyl chains and an extensive network of hydrogen bonds that link amide groups to the cyanide ligands and to neighboring headgroups.     

beta-Sheet mediated self-assembly of dipeptides of omega-amino acids and remarkable fibrillation in the solid state

Single crystal X-ray diffraction studies show that the extended structure of dipeptide Boc-beta-Ala-m-ABA-OMe (m-ABA: meta-aminobenzoic acid) self-assembles in the solid state by intermolecular hydrogen bonding to create an infinite parallel beta-sheet structure. In dipeptide Boc-gamma-Abu-m-ABA-OMe (gamma-Abu: gamma-aminobutyric acid), two such parallel beta-sheets are further cross-linked by intermolecular hydrogen bonding through m-aminobenzoic acid moieties. SEM (scanning electron microscopy) studies reveal that both the peptides and form amyloid-like fibrils in the solid state. The fibrils are also found to be stained readily by Congo red, a characteristic feature of the amyloid fiber whose accumulation causes several fatal diseases such as Alzheimer's, prion-protein etc.     

THE SOLID STATE LUMINESCENCE OF ESTROGENS

Abstract. The luminescent behavior of certain estrogens in the solid state is discussed. Spectra of solid films of estradiol and estriol are red shifted compared to that in liquid solutions with estriol shifted to a lesser extent. The red shifts are attributed to intermolecular hydrogen bonding, this conclusion being based on IR spectra and X-ray data. The calculated distance over which hydrogen bonding takes place is 2.755 Å in estradiol and 2.638 Å in estriol. The increased shift in the spectrum of estradiol is believed to be due to an additional hydrogen bond with a water molecule present in the solid film (O—O distance 2.793 Å). In estrone the weak fluorescence present in liquid solution is absent in solid film, in contrast to 3-desoxyestrone where fluorescence is preserved. Out of three possible forms of crystalline estrone only two can form hydrogen bonds, based on O-O distance calculations. In equilenin, which is highly fluorescent in liquid solution, no fluorescence is detected in solid film. This again is attributed to hydrogen bonding between the hydroxyl group of the β-naphtholic chromophore and the carbonyl group in the C(17) position. Dihydroequilenin which lacks the carbonyl group and equilenin dissolved in a host crystal retain their fluorescence.     

X-ray absorption spectroscopy measurements of liquid water

Recent studies, based on X-ray absorption spectroscopy (XAS) and X-ray Raman scattering (XRS), have shown that the hydrogen bond network in liquid water consists mainly of water molecules with only two strong hydrogen bonds. Since this result is controversial, it is important to demonstrate the reliability of the experimental data, which is the purpose of this paper. Here we compare X-ray absorption spectra of liquid water recorded with five very different techniques sensitive to the local environment of the absorbing molecule. Overall, the spectra obtained with photon detection show a very close similarity and even the observable minor differences can be understood. The comparison demonstrates that XAS and XRS can indeed be applied reliably to study the local bonding of the water molecule and thus to reveal the hydrogen bond situation in bulk water.     

X-ray Structural Analysis of Tetramethylammonium Fluorochromate(VI). A Link between Reactivity and the Extent of Symmetry

The crystal and molecular structure of tetramethylammonium fluorochromate(VI), (CH₃)₄N[CrO₃F] has been determined at 130(2) K by X-ray diffraction. X-ray data clearly demonstrate inequality between the Cr–O and the Cr–F bonds that is responsible for the higher reactivity of this compound over similar oxidizing agents in terms of the amount of oxidant and solvent required, short reaction times and high yields. The reason for this inequality is due to the CH· · ·F hydrogen bond that forms between the methyl hydrogen of the cation and the fluoride atom of the anion. The IR spectrum and hydrogen bonding of this compound is similar to the tetramethylammonium perchlorate salt and shows the existence of hydrogen bonding.     

Solid Dispersions of Ketoprofen in Drug-Loaded Electrospun Nanofibers

Solid dispersions of ketoprofen in nanofibers were prepared using electrospinning process with polyvinylpyrrolidone as the filament-forming polymer. Results from differential scanning calorimetry, X-ray diffraction, scanning electron microscopy, and fourier-transform infrared suggested that ketoprofen was well distributed in the polymer nanofibers in an amorphous solid dispersion state due to the hydrogen bonding between them. In vitro wetting and dissolution tests showed that the nanofibers could absorb water from the wet papers and wetted within several seconds, and ketoprofen could be exhausted within 30 seconds. Electrospinning is a useful process for the preparation of solid dispersions.     

Self-assembled discotic nematic liquid crystals formed by simple hydrogen bonding between phenol and pyridine moieties

New discotic nematic liquid crystals have been prepared through intermolecular hydrogen bonding between the core of 1,3,5-trihydroxybenzene (phloroglucinol, PG) or 1,3,5-tris(4-hydroxyphenyl)benzene (THPB) and the peripheral molecules of stilbazole derivatives. The various nematic phases formed by new hydrogen bonding building blocks were investigated by differential scanning calorimetry, polarising optical microscopy and X-ray diffraction. The first discotic complexes of PG and trans-4-alkoxy-4′-stilbazoles exhibited nematic columnar (N_C) and hexagonal columnar phases depending on the length of alkyl chains, which were considered as the basic discotic structure. Several structural variations on the building blocks were attempted to examine their effects on the liquid crystalline properties of discotic complexes. The nematic lateral phase (N_L) with enhanced intercolumnar order was observed for the complexes of PG and trans-4-cyanoalkoxy-4′ stilbazoles due probably to the strong dipole interactions between cyano groups at the end of alkoxy chains. By introducing the nonlinear structure in three arms of supramolecular discotic mesogen, a discotic nematic phase (N_D) was observed for the complex of THPB and trans-4-octyloxy-4 -stilbazole. The single hydrogen bonding between phenol and pyridine moieties in this study provides a simple and effective method for preparing the rarely found discotic nematic liquid crystals.