P588, A SECOND RETINAL-CONTAINING PIGMENT IN HALOBACTERIUM HALOBIUM

Abstract— Halobacterium mutant strains with defects in the biosynthesis of various pigments have been isolated. One of these strains, mutant ET-15, is incapable of producing the light-driven proton pump bacteriorhodopsin and the carotenoid bacterioruberin. However, ET-15 synthesizes another photochemically active, retinal-containing pigment, P₅₈₈, which mediates light-induced proton uptake enhanced by uncouplers. P₅₈₈ and bacteriorhodopsin are simultaneously present in wild-type cells grown under normal conditions; however, they can be distinguished by the following criteria.

• 1 They can be separated by independent mutational events.
• 2 Proton ionophores such as FCCP diminish bacteriorhodopsin-driven proton translocation but enhance P₅₈₈-mediated proton flows. We define here proton translocations which can be diminished by the addition of uncouplers (e.g. FCCP) as ‘active’, others which can be enhanced by FCCP as ‘passive’.
• 3 The kinetic and spectral properties of the photocycle intermediates of bacteriorhodopsin and P₅₈₈ are different.
• 4 The action spectrum for photocycling of P₅₈₈ is red-shifted with respect to that for bacteriorhodopsin.

A comparison of action spectra for proton translocations with that for photocycling links pigment P₅₈₈ and light-driven, passive proton uptake by ET-15 envelope vesicles. When chemically bleached P₅₈₈ was regenerated with all-trans-retinal, both photochemical activity and light-induced proton inflow were restored to equal extents. This identifies P₅₈₈ with the energizer for the passive proton flows.     

Electrochemical theory of the transfer of protons across a biological membrane facilitated by weak acid uncouplers added to the medium

An electrochemical theory of the transport of protons across a biological membrane facilitated by uncouplers of oxidative phosphorylation added to the medium has been developed. The interfacial potential differences at the two membrane/solution interfaces are explicitly taken into account. The derived equations are applied to explain the uncoupling activity of uncouplers like 2,4,6-trinitrophenol, 2,4-dinitrophenol, carbonylcyanide p-trifluoromethoxyphenylhydrazine, and 3,5-di(tert-butyl)-4-hydroxy-benzylidenemalononitrile, in terms of their protonic dissociation constants in aqueous solution (K^W) as well as in the membrane medium (K^M) and their standard ion-transfer potential (of anionic form) at the membrane/solution interface (ΔΦ_A^o); the (relative) values of K^M and ΔΦ_A^o are estimated from data determined by ion-transfer voltammetry of the uncouplers at the nitrobenzene/water interface. The equations can also explain the unique behaviour of picrate as uncoupler that it is ineffective when added to intact mitochondria but effective when added to submitochondrial particles with inside-out mitochondrial inner membranes.     

Aryl urea substituted fatty acids: a new class of protonophoric mitochondrial uncoupler that utilises a synthetic anion transporter

Respiring mitochondria establish a proton gradient across the mitochondrial inner membrane (MIM) that is used to generate ATP. Protein-independent mitochondrial uncouplers collapse the proton gradient and disrupt ATP production by shuttling protons back across the MIM in a protonophoric cycle. Continued cycling relies on the formation of MIM-permeable anionic species that can return to the intermembrane space after deprotonation in the mitochondrial matrix. Previously described protonophores contain acidic groups that are part of delocalised π-systems that provide large surfaces for charge delocalisation and facilitate anion permeation across the MIM. Here we present a new class of protonophoric uncoupler based on aryl-urea substituted fatty acids in which an acidic group and a π-system are separated by a long alkyl chain. The aryl-urea group in these molecules acts as a synthetic anion receptor that forms intermolecular hydrogen bonds with the fatty acid carboxylate after deprotonation. Dispersal of the negative charge across the aryl-urea system produces lipophilic dimeric complexes that can permeate the MIM and facilitate repeated cycling. Substitution of the aryl-urea group with lipophilic electron withdrawing groups is critical to complex lipophilicity and uncoupling activity. The aryl-urea substituted fatty acids represent the first biological example of mitochondrial uncoupling mediated by the interaction of a fatty acid and an anion receptor moiety, via self-assembly.

A new mitochondrial uncoupler that forms membrane permeable dimers through interactions of remote acidic and anion receptor groups.     

Amines That Transport Protons across Bilayer Membranes: Synthesis, Lysosomal Neutralization, and Two-Phase pK(a) Values by NMR

It is desirable to be able to control the pH of lysosomes. A collection of lipophilic, nitrogenous bases, designed to act as membrane-active, catalytic proton transfer agents, were prepared and their effective pK(a)s measured in a vigorously stirred, two-phase system. One phase was a phosphate buffer whose pH was varied over the range ca. 1-11. The other was an immiscible, deuterated organic solvent in which the compounds preferentially resided even when protonated. When chemical shift changes versus the pH of the buffer were plotted, clear pK(a) curves were generated that are relevant to transmembrane proton transfer behavior. The two-phase pK(a)s increased with increasing counterion lipophilicity and with increasing organic solvent polarity. The compounds were also tested for their ability to neutralize the acidity of lysosomes, a model for other acidic vesicles involved in drug sorting. The most successful of these, imidazole 6a, has >100 times the neutralizing power of ammonia, a standard lysosomotropic amine, causing a 1.7 unit rise in lysosomal pH of RAW cells at 0.1 mM, compared to a 0.2 and 1.4 unit rise for ammonium chloride at 0.1 and 10 mM, respectively.     

PHOTOREACTIVITY OF ISOLATED PHOTOSYSTEM I PARTICLES UPON COMBINATION WITH ARTIFICIAL LIPID MEMBRANES OR TRITON X-100 MICELLES*

Abstract— PS-I particles isolated according to Shiozawa et al. (1974) show increased rates of O₂-_- and H ⁺-uptake with ascorbate as electron donor upon combination with an artificial vesicular lipid membrane. The amount of increase varies depending on the reconstitution procedure used. Combination of PS-I particles with Triton X-100 micelles increases these photochemical activities even more. The observed proton uptake in PS-I lipid vesicles is not caused by the well-known proton gradient found in thylakoid membranes, since lipid vesicles containing extracted leaf Chl show the same activities and uncouplers have no effect. Because these phenomena are also caused by solubilized Chl, it is concluded that there is no obvious correlation with PS-I activity. Proton uptake most probably is caused by oxidation of ascorbate by either singlet oxygen, superoxide or OH-radicals formed in the light. Experimental results are obtained which indicate that Chl in lipid catalyzes formation of superoxide and singlet oxygen. However, it is not clear whether superoxide formation is caused by direct electron transport from excited Chl to oxygen or by a secondary reaction. Diphenylcarbazone disproportionation has been reported as a specific photosystem I reaction. However, PS-I lipid vesicles and Chl-lipid-Triton X-100 mixtures oxidize DPCN at comparable rates, showing that the reaction is not specific for PS-I. Cations stimulate DPCN disproportionation in Chl-lipid-Triton X-100 mixtures but do not affect the rate of P700 photooxidation at all. Therefore it is suggested that Gross and Greniers (1978) conclusion that cation regulation of PSI electron flow (studied by DPCN disproportionation of PS-I particles in Triton X-100 micelles) provides a fine tuning mechanism for energy transfer, has to be reevaluated.     

A critical evaluation of different QM/MM frontier treatments with SCC-DFTB as the QM method

The performance of different link atom based frontier treatments in QM/MM simulations was evaluated critically with SCC-DFTB as the QM method. In addition to the analysis of gas-phase molecules as in previous studies, an important element of the present work is that chemical reactions in realistic enzyme systems were also examined. The schemes tested include all options available in the program CHARMM for SCC-DFTB/MM simulation, which treat electrostatic interactions due to the MM atoms close to the QM/MM boundary in different ways. In addition, a new approach, the divided frontier charge (DIV), has been implemented in which the partial charge associated with the frontier MM atom ("link host") is evenly distributed to the other MM atoms in the same group. The performance of these schemes was evaluated based on properties including proton affinities, deprotonation energies, dipole moments, and energetics of proton transfer reactions. Similar to previous work, it was found that calculated proton affinities and deprotonation energies of alcohols, carbonic acids, amino acids, and model DNA bases are very sensitive to the link atom scheme; the commonly used single link atom approach often gives error on the order of 15 to 20 kcal/mol. Other schemes give better and, on average, mutually comparable results. For proton transfer reactions, encouragingly, both activation barriers and reaction energies are fairly insensitive (within a typical range of 2-4 kcal/mol) to the link atom scheme due to error cancellation, and this was observed for both gas-phase and enzyme systems. Therefore, the effect of using different link atom schemes in QM/MM simulations is rather small for chemical reactions that conserve the total charge. Although the current study used an approximate DFT method as the QM level, the observed trends are expected to be applicable to QM/MM methods with use of other QM approaches. This observation does not mean to encourage QM/MM simulations without careful benchmark in the study of specific systems, rather it emphasizes that other technical details, such as the treatment of long-range electrostatics, tend to play a more important role and need to be handled carefully.     

Co/Bi催化剂催化湿法氧化降解垃圾渗滤液中的氨氮

采用催化湿法氧化(CWAO)技术,以Co/Bi为催化剂,对垃圾渗滤液中氨氮(NH₃-N)进行降解处理,并利用GC-MS检测了垃圾渗滤液中含氮有机物的相对含量.结果表明,随着反应温度的升高,CWAO对NH₃-N的降解能力逐渐增强,在220,240,260和280℃条件下,NH₃-N降解规律符合一级动力学反应(r>0.93,n=6).在升温过程(20～300℃)中,NH₃-N浓度变化经历了先升后降两个阶段,并在220℃时达到最大值.GC-MS检测结果表明,在第一阶段,垃圾渗滤液中几种含氮有机物因催化氧化而生成NH₃-N;第二阶段,NH₃-N逐渐被氧化降解,达到了CWAO技术同时降解有机物和NH₃-N的目的.同时,选取垃圾渗滤液中一种含氮有机物2-巯基苯并噻唑进行含氮有机物氮降解机理的验证实验.     

Structure of adducts of the intermolecular interaction of dimethylpyrazole and diphenylformamidine with hydrogen halides in the solution

The structure of adducts forming in the solution due to the interaction of bifunctional azo compounds (dimethylpyrazole (DMP) and diphenylformamidine (DPFA)) with hydrogen halides (HF, HCl, and HBr) is found from the data of the IR absorption spectra and quantum chemical calculations. It is shown that in the interaction with HCl or HBr proton donors, proton transfer via the hydrogen bond to the basic N atom of the azo compound occurs with the formation of an NH⁺…Hal⁻ ionic pair. Strong evidences of proton transfer and the anion-cation pair formation are not found for the DMP-_F structure, and complexes with the molecular N…HF hydrogen bond are the dominant structures. Geometric parameters of the formed structures are calculated. The formation of trimers, containing two molecules of the azo compound and one HHal molecule, with an increase in the nitrogenous base concentration is experimentally proved, and the trimer structure is determined.     

Electrochemical elucidation on the mechanism of uncoupling caused by hydrophobic weak acids

Uncoupler-mediated cation transport has been investigated by cyclic voltammetry for the ion transfer from one aqueous phase (W1) to another (W2) across a bilayer lipid membrane (BLM) in the presence of typical uncouplers, 3,5-di(tert-butyl)-4-hydroxybenzylidenemalononitril (SF6847) and 2,4-dinitrophenol (DNP). The voltammograms for the ion transfer were in a steady state and exhibited a rotated sigmoidal shape that was almost symmetrical about the origin (0 V, 0 A). The plot of the ion transfer current against pH was a bell-type curve centered on pH approximately = pK(a) + 1, K(a) being the dissociation constant of the uncouplers in the aqueous phase. Taking into account the ion transfer reactions at the W1|BLM and the BLM|W2 interfaces, these properties were well explained by our proposed model which considers that the ion transfer current is attributable to the facilitated transfers of H(+) and Na(+). The buffer action in the aqueous phase was found to play an important role in the facilitated H(+)-transfer across the BLM. The nature of the pH-dependence of the ion transfer current was reasonably explained from an electrochemical viewpoint based on the distribution coefficient of the anionic and neutral forms of SF6847, as estimated from its absorption spectra in liposomal membrane. The proposed model is also valuable for understanding the pH-dependence of uncoupling activity in mitochondria in the literature.     

STEADY-STATE FLUORESCENCE METHOD FOR EVALUATING EXCITED STATE PROTON REACTIONS: APPLICATION TO FLUORESCEIN

Abstract Fluorescein is a complex fluorophore in the sense that it displays four prototropic forms (cation, neutral, monoanion and dianion) in the pH range 1–9. In experiments with fluorescein-labeled proteins we have sometimes observed complex nanosecond emission kinetics, which could be due to conversion of the excited monoanion into the excited dianion through an excited state proton exchange with a proton acceptor in the labeled protein. However, the literature is ambiguous on whether this possible excited state proton reaction of fluorescein does occur in practice. In this article we describe a general steady-state fluorescence method for evaluating excited state proton reactions of simple as well as complex pH-sensitive fluorophores and apply it to evaluate excited state proton reactions of fluorescein. The method depends on finding a buffer that can serve as an excited state proton donor-acceptor but does not significantly perturb ground state proton equilibrium and especially does not form ground (or excited state complexes) with the fluorophore. Our results show that the excited monoanion-dianion proton reaction of fluorescein does occur in the presence of phosphate buffer, which serves as a proton donor-acceptor that does not significantly perturb ground state proton equilibria. The reaction becomes detectable at phosphate buffer concentrations greater than 20 mM and the reaction efficiency increases with increase in phosphate buffer concentrations. The reaction is most clearly demonstrated by adding phosphate buffer to a solution of fluorescein at constant pH 5.9 with preferential excitation of the monoanion. Under these conditions, the excited monoanion converts to the dianion during its lifetime. The conversion is detected experimentally as an increase in dianion and decrease in monoanion fluorescence intensities with increase in phosphate buffer concentration. The absorption spectrum is not significantly perturbed by the increase in phosphate buffer concentration. To quantitate the reaction, we have recorded titration graphs of fluorescence intensity versus pH for fluorescein solutions at low (5 mM) and high buffer (1 M) concentrations with preferential excitation of the monoanion and preferential detection of the dianion emission. We have also developed theoretical expressions that relate fluorescence intensity to pH in terms of the concentration of the four prototrophic forms of fluorescein, extinction coefficients, fluorescence efficiencies and ground and excited state pK_a. The theoretical expressions give very good fits to the experimental data and allow evaluation of fundamental parameters such as pK_a and fluorescence efficiencies. The analysis of the experimental data shows that the excited monoanion-dianion reaction does not significantly occur at 5 mM phosphate buffer concentration. However, at 1 M buffer concentration the reaction is sufficiently fast that it practically achieves equilibrium during the lifetimes of the excited fluorescein monoanion and dianion. The pK_a* of the excited monoanion-dianion proton reaction is around 6.3. The results and methods presented here should be useful in the development and testing of pH-sensitive labeling fluorophores and fluorescent indicators.     

Oxidized carbon nanotubes as matrix for matrix-assisted laser desorption/ionization time-of-flight mass spectrometric analysis of biomolecules

Oxidized carbon nanotubes (CNTs), which can form a stable homogeneous suspension in water close to a solution phase, were synthesized and used for matrix-assisted desorption/ionization mass spectrometric (MALDI-MS) analysis of biomolecules. Infrared (IR) spectra, transmission electron microscopy (TEM) and particle size analysis were used for the characterization of the oxidized CNTs. The results indicate that the physical structure of the CNTs was not damaged, but carboxylate groups were introduced onto the surface of the CNTs. In addition, impurities including amorphous carbon, which is one of the main reasons for ion source contamination, were destroyed by the oxidization. The carboxyl groups on the oxidized surface of the CNTs can not only provide an additional proton source, but can also increase the surface polarity and solubility of the CNTs, making it easier to manipulate which is important for MALDI analysis of some biomolecules, especially larger peptides and proteins. The oxidized CNTs were successfully applied to the analysis of neutral oligosaccharides, peptides, and insulin, and thus promise to be an efficient matrix for MALDI-MS analysis of biomolecules.     

Structure-reactivity relationships in reactions of alkane radical cations: Study of the proton transfer from alkane radical cations to alkane molecules in γ-irradiated disordered CCl3F/alkane systems by ESR spectroscopy at cryogenic temperatures

A summary is presented of ESR results obtained in γ-irradiated disordered CCl₃F/alkane systems at cryogenic temperatures, with respect to proton-donor site selectivity in the proton transfer from alkane radical cations to alkane molecules. The nature of the alkyl radicals formed by proton transfer is indicative for the site of proton donation and is derived unambiguously from ESR results by comparison with powder spectra of authentic isomeric alkyl radicals, obtained by γ-irradiation of various chloro and bromoalkanes in perdeuterated cis-decalin. The experiments can be divided into two main classes. (i) Experiments on n-alkane radical cations in the extended all-trans conformation, i.e. ESR results on the system CCl₃F/heptane. The ESR spectrum of γ-irradiated CCl₃F/heptane consists of a triplet due to heptane radical cations in the extended all-trans conformation. In this conformation, the unpaired electron is delocalized over the carbon-carbon σ-bonds as well as the two chain-end carbon-hydrogen bonds that are in the plane of the C---C skeleton. Superimposed on the ESR triplet is a low-intensity spectrum due to heptyl radicals, which increases drastically with increasing heptane concentration. The formation of these heptyl radicals can be attributed unambiguously to proton transfer from heptane radical cations to heptane molecules, taking place in small heptane clusters to which positive-hole transfer still occurs efficiently. At the onset of proton transfer with increasing heptane concentration only primary heptyl radicals are present, clearly showing that the proton transfer takes place selectively from a chain-end position, in accordance with the electronic structure of the reacting radical cations. At higher heptane concentration secondary heptyl radicals also appear as a result of intermolecular radical-site transfer, i.e. the nature of the heptyl radicals becomes governed by their thermodynamic stability. (ii) Experiments on n-alkane radical cations in the gauche-at-C₂ conformation, i.e. ESR results on the system CCl₃F/octane. The ESR spectrum of γ-irradiated CCl₃F/octane indicates that octane radical cations are largely in the gauche-at-C₂ conformation in this matrix, with large unpaired-electron (and positive-hole) density on one planar chain-end C---H bond and one planar penultimate C---H bond at the other side of the radical cation. Careful investigation of ESR spectra with increasing octane concentration clearly reveals that in this case secondary octyl radicals are present from the very onset of proton transfer, in accordance with the electronic structure of the reacting radical cations. The results clearly point to proton-donor site selectivity in the proton transfer from alkane radical cations to alkane molecules and to a strict dependence of the site of proton donation on the electronic structure and conformation of the reacting radical cations.     

INHIBITION AND UNCOUPLING OF ELECTRON TRANSPORT IN ISOLATED CHLOROPLASTS BY THE HERBICIDE 4,6-DINITRO-O-CRESOL

Abstract— Dinitrophenols are known to affect photosynthetic electron transfer. It is shown that the widely used herbicide 4,6-dinitro-o-cresol is a potent inhibitor of the Hill reaction in isolated chloroplasts. By studying different parts of Photosystem II dependent electron transport it is indicated that this herbicide inhibits at the same site as 3-(3.4-dichlorophenyl)-l,1-dimethylurea.
However, the Photosystem I dependent Mehler reaction ascorbate/dichlorophenolindophenol→ diquat is stimulated at higher concentrations of the herbicide. This stimulation does not occur when an uncoupler is added to the reaction medium. There is also no stimulation of the ascorbatep-tetra-methyl-p-phenylene diamine → diquat Mehler reaction. This suggests that 4,6-dinitro-o-cresol uncouples electron transport in the Photosystem I dependent Mehler reaction, when added at higher     

Kinetic isotope effects for concerted multiple proton transfer: a direct dynamics study of an active-site model of carbonic anhydrase II

The rate constant of the reaction catalyzed by the enzyme carbonic anhydrase II, which removes carbon dioxide from body fluids, is calculated for a model of the active site. The rate-determining step is proton transfer from a zinc-bound water molecule to a histidine residue via a bridge of two or more water molecules. The structure of the active site is known from X-ray studies except for the number and location of the water molecules. Model calculations are reported for a system of 58 atoms including a four-coordinated zinc ion connected to a methylimidazole molecule by a chain of two waters, constrained to reproduce the size of the active site. The structure and vibrational force field are calculated by an approximate density functional treatment of the proton-transfer step at the Self-Consistent-Charge Density Functional Tight Binding (SCC-DFTB) level. A single transition state is found indicating concerted triple proton transfer. Direct-dynamics calculations for proton and deuteron transfer and combinations thereof, based on the Approximate Instanton Method and on Variational Transition State Theory with Tunneling Corrections, are in fair agreement and yield rates that are considerably higher and kinetic isotope effects (KIEs) that are somewhat higher than experiment. Classical rate constants obtained from Transition State Theory are smaller than the quantum values but the corresponding KIEs are five times larger. For multiple proton transfer along water bridges classical KIEs are shown to be generally larger than quantum KIEs, which invalidates the standard method to distinguish tunneling and over-barrier transfer. In the present case, a three-way comparison of classical and quantum results with the observed data is necessary to conclude that proton transfer along the bridge proceeds by tunneling. The results suggest that the two-water bridge is present in low concentrations but makes a substantial contribution to proton transport because of its high efficiency. Bridging structures containing more water molecules may have lower energies but are expected to be less efficient. The observed exponential dependence of the KIEs on the deuterium concentration in H(2)O/D(2)O mixtures implies concerted transfer and thus rules out substantial contributions from structures that lead to stepwise transfer via solvated hydronium ions, which presumably dominate proton transfer in less efficient carbonic anhydrase isozymes.     

Feasibility of 2,4,6-Trichlorophenol and Malonic Acid as Metabolic Uncoupler for Sludge Reduction in the Sequence Batch Reactor for Treating Organic Wastewater

The activated sludge process generates a large amount of excess sludge as a byproduct, which is one of the most serious challenges in biological wastewater treatment. In the present study, the feasibility of 2,4,6-trichlorophenol (TCP) and malonic acid (MA) as metabolic uncouplers to reduce sludge generation in the sequence batch reactor (SBR) for treating organic wastewater for a long period was studied. The results showed that 2 mg/L TCP could reduce sludge generation by about 47%, while chemical oxygen demand (COD) removal efficiency and sludge settlability were not obviously influenced. Although 10 mg/L MA could also reduce excess sludge production by about 30% while slightly affecting COD removal, it seriously deteriorated sludge settlability. Accordingly, TCP is a better uncoupler for sludge reduction for a longer period in the SBR for treating organic wastewater, and MA can only be used as a short-term or transitional uncoupler. Microscopic and 16S ribosomal deoxyribonucleic acid analyses showed that the microbial population of sludge varied when uncouplers were fed to the activated sludge system. Occurrence of large amounts of filament and the disappearance of protozoa may be the main reason for the aggravation of sludge settlability under uncoupled metabolic conditions caused by MA.     

The mitochondria from beef heart as biosensors for the selective monitoring of phenols

We propose a simple and rapid procedure which allows for the selective monitoring in solution of toxic compounds which behave as uncouplers of the oxidative phosphorylation. Since all phenols, are uncouplers of the oxidative phosphorylation, the procedure allows for the selective monitoring in solution of phenols even in presence of other toxic compounds. The biological sensor are the mitochondria from beef heart. This biosensor is easily available without a stabular and therefore the biosensor and the whole procedure is very simple and not expensive. By linear regression analysis, it results that the procedure well predicts the response of the standard fish method to phenols. Therefore the procedure can be utilized as prescreening analysis for the monitoring the phenols in aqueous samples.     

Proton hopping in phosphoric acid solvated nafion membrane: a molecular simulation study

Molecular simulation studies of the microstructure and of the proton transport properties of phosphoric acid solvated Nafion membrane are carried out. The ab initio calculations show that the phosphoric acid is a good solvent to promote the proton ionization of the sulfonic acid group, and only two phosphoric acid molecules are necessary for the dissociation of one sulfonic acid group. A mechanism of proton hopping between phosphoric acid and protonated phosphoric acid cation in the hydrophilic subphase is also elucidated by ab initio calculations. The molecular dynamics simulations, conducted at a phosphoric acid concentration of 25.4% (wt) which is slightly lower than that of phosphoric acid swollen Nafion, show that the phosphoric acid exists in subphases and that it cannot develop into a continuous subphase. Thus, proton-hopping pathways are interrupted, and the conductivity is expected to be lower than that for pure phosphoric acid. The molecular dynamics simulations, conducted at a phosphoric acid concentration of 45.1% (wt) which corresponds to an unstable state, show that the hydrophobic poly(tetrafluoroethylene) backbones trend to gather together forming hydrophobic clusters and that the phosphoric acid forms a continuous subphase with the sulfonic acid groups located at the hydrophobic/hydrophilic interface. Thus, proton-hopping pathways can develop uninterruptedly like the pure phosphoric acid, and high conductivity is expected. The molecular dynamics study also shows that the hydrogen-bonding characteristics of phosphoric acid and sulfonate anion are similar regardless of the factor that the former can move freely while the latter is attached to Nafion backbone.     

Electron transfer versus proton transfer in gas-phase ion/ion reactions of polyprotonated peptides

The ion/ion reactions of several dozen reagent anions with triply protonated cations of the model peptide KGAILKGAILR have been examined to evaluate predictions of a Landau-Zener-based model for the likelihood for electron transfer. Evidence for electron transfer was provided by the appearance of fragment ions unique to electron transfer or electron capture dissociation. Proton transfer and electron transfer are competitive processes for any combination of anionic and cationic reactants. For reagent anions in reactions with protonated peptides, proton transfer is usually significantly more exothermic than electron transfer. If charge transfer occurs at relatively long distances, electron transfer should, therefore, be favored on kinetic grounds because the reactant and product channels cross at greater distances, provided conditions are favorable for electron transfer at the crossing point. The results are consistent with a model based on Landau-Zener theory that indicates both thermodynamic and geometric criteria apply for electron transfer involving polyatomic anions. Both the model and the data suggest that electron affinities associated with the anionic reagents greater than about 60-70 kcal/mol minimize the likelihood that electron transfer will be observed. Provided the electron affinity is not too high, the Franck-Condon factors associated with the anion and its corresponding neutral must not be too low. When one or the other of these criteria is not met, proton transfer tends to occur essentially exclusively. Experiments involving ion/ion attachment products also suggest that a significant barrier exists to the isomerization between chemical complexes that, if formed, lead to either proton transfer or electron transfer.     

Improving peptide fragmentation by N-terminal derivatization with high proton affinity

An improved method of de novo peptide sequencing based on mass spectrometry using novel N-terminal derivatization reagents with high proton affinity has been developed. The introduction of a positively charged group into the N-terminal amino group of a peptide is known to enhance the relative intensity of b-ions in product ion spectra, allowing the easy interpretation of the spectra. However, the physicochemical properties of charge derivatization reagents required for efficient fragmentation remain unclear. In this study, we prepared several derivatization reagents with high proton affinity, which are thought to be appropriate for peptide fragmentation under low-energy collision-induced dissociation (CID) conditions, and examined their usefulness in de novo peptide sequencing. Comparison of the effects on fragmentation among three derivatization reagents having a guanidino or an amidino moiety, which differ in proton affinity, clearly indicated that there was an optimal proton affinity for efficient fragmentation of peptides. Among reagents tested in this study, derivatization with 4-amidinobenzoic acid brought about the most effective fragmentation. This derivatization approach will offer a novel de novo peptide sequencing method under low-energy CID conditions.