Conformational analysis and crystal structure of (<Emphasis Type="Italic">E</Emphasis>)-3-methyl-4-(<Emphasis Type="Italic">p</Emphasis>-tolyldiazenyl)phenol

The single crystal X-ray diffraction analysis of the title compound, C₁₄H₁₄N₂O, reveals that an interesting intermolecular or extended structure (hydrogen-bonded polymeric zigzag chains) is formed by linking its monomer units with O–H···N type intermolecular hydrogen bonds. The compound crystallizes in the monoclinic space group P2₁/n with a = 5.8151(5) Å, b = 18.106(1) Å, c = 11.515(1) Å  and β = 96.891(7)°. In order to understand better its structural aspects in solid state, quantum chemical (PM3) calculations were performed on a part of the extended structure of the title compound containing ten monomers. To determine in vacuo conformational flexibility of the compound, molecular energy profile of the title compound was obtained with respect to a selected torsional degree of freedom and the pedal angle varied from ?180° to +180° in every 10°. The results from the computational study suggest that hydrogen-bonding properties in the crystal lattice is fundamental in determining the crystallographically observed conformation of the title compound.     

Crystallographic and conformational analysis of (<Emphasis Type="Italic">E</Emphasis>)-2-isopropyl-4-(<Emphasis Type="Italic">p</Emphasis>-tolyldiazenyl)phenol

The molecular and crystal structures of the title compound, C₁₆H₁₈N₂O, were characterized and determined by single crystal X-ray diffraction method in addition to spectroscopic means such as IR, UV–VIS and ¹H NMR. The compound crystallizes in orthorhombic space group P bca, with a = 9.3350(5) Å, b = 23.4878(13) Å, c = 26.5871(12) Å, Z = 16, D _calc. = 1.1591(1) g/cm³, μ (MoK_α) = 0.073 mm^?1. Monomers of the compound in the crystal structure are linked into C(7) and C(8) chains generated by translation along the [1 0 0] direction with the aid of O–H···N type H-bonds which serve to the stabilization of periodic organization of the molecules beside major and minor component in the disordered azo fragment. In order to describe conformational flexibility and the crystal packing effects on the molecular conformation, potential barriers regarding the rotation along both Ar–N bonds were calculated by varying the related torsional degrees of freedom in every 10° ranging from ?180° to +180° via quantum chemical calculations at DFT/B3LYP level.     

Molecular conformation of the racemic indan derivative (±)-1-trans-3-(3,4-dichlorophenyl)-2,3-dihydro-1H-indene-1-carboxamide

This paper presents the structural characterization of the indan derivative (±)-1-trans-3-(3,4-dichlorophenyl)-2,3-dihydro-1H-indene-1-carboxamide, which was unambiguously determined by X-ray diffraction (XRD) to be a racemate (R/S: 50/50) crystallizing in an achiral crystal structure (P2₁/c, a = 9.3180(1) Å, b = 7.9070(2) Å, c = 19.7550(4) Å, β = 103.250(1)°, V = 1416.75(5) Å³ and Z = 4). The diastereomers are related by the inversion symmetry and linked by H bond forming a dimer. The crystal packing is stabilized by hydrogen bonds, including the classical one responsible for the formation of centrosymmetric dimers, and non-classical ones involving C–H···O and C–H···π-aryl interactions. The intra and intermolecular geometry of the title compound is compared to the (±)-1-trans-3-(3,4-dichlorophenyl)-2,3-dihydro-1H-indene-1-carboxylic acid one, which also present an achiral crystal structure from racemates (R/S: 50/50). The two indan derivatives crystallize in a very similar unit cell.     

Synthesis,characterization, crystal and molecular structure analysis of a novel 1-benzhydryl piperazine derivative: 1-benzhydryl-4-(2-nitro-benzenesulfonyl)-piperazine

A novel 1-benzhydryl piperazine derivative 1-benzhydryl-4-(2-nitro-benzenesulfonyl)-piperazine was synthesized by the nucleophilic substitution of 1-benzhydryl piperazine with 2-nitro-benzenesulfonyl chloride. The product obtained was characterized spectroscopically and finally confirmed by X-ray diffraction study. The title compound, C₂₃H₂₃N₃O₄S crystallizes in the monoclinic space group C2/c with cell parameters a = 13.1120(9) Å, b = 21.4990(9) Å, c = 16.655(1) Å, β = 111.352(2)°, Z = 8, and V = 4372.7(4) Å. The structure reveals that the piperazine ring is in a chair conformation. The geometry around the S atom is distorted tetrahedral. There is a large discrepancy in the bond angles around the piperazine N atoms. The structure is stablized by C–H···O type intermolecular hydrogen bonding interactions.     

Synthesis and crystal structure of methyl 2-(2,4-dichloro-5-fluorobenzoyl)-3-(pyrimidin-2-ylamino)acrylate

Methyl 2-(2,4-dichloro-5-fluorobenzoyl)-3-(pyrimidin-2-ylamino)acrylate has been prepared. Its crystal structure is discussed. The compound crystallizes in the triclinic space group P-1 with a = 11.6259 (7) Å, b = 11.8789 (7) Å, c = 13.9206 (5) Å, α = 68.0250 (10)°, β = 77.5660 (10)°, γ = 62.4950 (10)°, V = 1579.18 (14) ų, Z = 4. There are two independent but chemically identical molecules in the asymmetric unit. The molecules are packed in the crystal structure by weak intermolecular C–H···O and C–H···F interactions.     

A new mesogenic fluorene derivative: 2,7-bis(4-pentylphenyl)-9,9-diethyl-9H-fluorene

The title compound, 2,7-bis(4-pentylphenyl)-9,9-diethyl-9H-fluorene, is a new mesogenic compound containing the fluorene moiety. It exhibits a monotropic nematic liquid crystalline behaviour, with isotropisation temperature of 53°C. The compound is also polymorphic in the solid state, with one crystal phase melting at 103°C and another one melting at 71°C. The crystal and molecular structure of the high melting solid phase have been determined from single crystal X-ray diffraction analysis. Crystals are monoclinic, with cell dimensions a = 16.649(6) Å, b = 8.305(3) Å, c = 24.598(7) Å, β = 111.60(2)?, space group P2₁/c and four molecules in the unit cell. Refinement leads to R = 0.0558. The two terminal alkyl chains and one phenyl ring are disordered over two split positions. The imbricated molecular packing observed in the solid state seems to resemble that of the nematic phase that is formed upon cooling the melt.     

Synthesis and structural characterization of Palladium(II) complex bearing <Emphasis Type="Italic">N</Emphasis>-Heterocyclic Carbene

Trans-Bis[1,3-bis(2,4-dimethylphenylimidazolidin-2-ylidene)]dichloropalladium(II), 4, was prepared from 1,3-bis(2,4-dimetilphenyl)imidazoliniumchloride. The crystal and molecular structure of 4 have been determined by single crystal X-ray diffraction. The title compound, C₃₈H₄₄N₄PdCl₂, crystalizes in the monoclinic space group P 21/n with a = 13.8713(9) Å, b = 12.1365(6) Å, c = 21.5499(15) Å. The Pd atom has a slightly distorted square planar coordination geometry. The molecules of the title compound are linked by C–H···Cl weak hydrogen bonds into two-dimensional sheets parallel to the (001) plane. In addition, the title compound was characterized by elemental analyses and NMR spectroscopy.     

Synthesis and crystal structure of diferrocenylmethoxyethylamine

The reaction of diethanolamine with diferrocenylmethyl carbonium (2) that was generated by diferrocenylmethanol (1) treated with BF₃ in CH₂Cl₂ provided the synthesis of title compound diferrocenylmethoxyethylamine (3). The structure of 3 was determined by the X-ray diffraction (XRD) with crystal data: monoclinic P2₁/n space group and a=5.8419(14) Å, b=13.572(3) Å, c=23.839(6) Å, α=90°, β=91.827(5)°, γ=90°, V=1889.2(8) Å³, Z=4, D _c =1.558 mg·m^?3, μ=1.548 mm^?1, F(000)=920. The intra- and inter-molecular H bonding modes in 3 were demonstrated both in molecular crystal structure and IR spectral characterization.     

Hydrothermal synthesis, structure and thermal property of a 2-dimensional network: sodium sulfate [Ni(H2O)6(NaSO4)2]

The title compound of [Ni(H₂O)₆(NaSO₄)₂] has been synthesized under hydrothermal conditions and characterized by single crystal X-ray diffraction. The compound crystallizes in space group P2₁/c of the monoclinic system in a cell at 293.2 K of a=6.1820(12) Å, b=12.316(3) Å, c=9.0890(18) Å, β=106.03(3)°, and V=665.1(2) Å³. In the title compound, each SO₄ tetrahedron coordinates with three Na(I) ions and each Na(I) connects to three SO₄ tetrahedrons. Such a coordinate model makes up a two-dimensional network having two different kinds of rings and, in the bigger rings, the [Ni(H₂O)₆]²⁺ ions are located. In the solid state, some hydrogen bonds connect the title compound to form three-dimensional networks, stabilizing the crystal structure. Thermogravimetric analysis shows that there are three steps of weight loss from the beginning of 110 °C and the residue may be the mixtures of NiO₂ and Na₂O.     

A novel layered supramolecular compound containing 2D network of eight-member water clusters and terephthalato extended-bridged

A novel layered supramolecular compound [Ni(L)(TPHA)]·8H₂O, containing two-dimensional (2D) water clusters and terephthalato-bridged ligand, where L = 1,3,6,9,11,14-hexaazatricyclo[12.2.1.1^6,9] octadecane, TPHA = terephthalate dianion, has been synthesized and structurally characterized by spectroscopy and X-ray crystallography. The complex is neutral, in which the nickel(II) ions are bridged by the TPHA to form a one-dimensional (1D) infinite chain structure, and containing the eight-member water cluster. The presence of octameric water clusters have effectively increased the 1D coordination polymer to a three-dimensional layered structure. Every water cluster is connected strongly by a O–H···O hydrogen bond (range of the bonds between 2.724 and 3.056 Å). The complex crystallizes in monoclinic, space group P21/c with a = 9.788(3), b = 13.030(4), c = 11.646(4) Å, and β = 104.551(5)°.     

Synthesis of diferrocenylmethoxyethanol via reaction of diferrocenylmethyl cabonium with glycol and its crystal structure

The new compound diferrocenylmethoxyethanol has been synthesized from the reaction of glycol in the presence of triethylamine with diferrocenylmethyl carbonium which was generated by diferrocenylmethanol treated with BF₃ in CH₂Cl₂ without separation from the reaction mixture. Diferrocenylmethoxyethanol was characterized by elemental analysis, ¹H NMR and IR. The structure was also confirmed by a X-ray single crystal study. It was found that diferrocenylmethoxylethanol crystallized in a monoclinic P2₁ space group and a=5.8250(8) Å, b=7.4034(10) Å, c=21.773(3) Å, α=90°, β=95.020(3)°, γ=90°, V=935.4(2) Å³, Z=2, D _c=1.577 mg·m^?3, μ=1.566 mm^?1, F(0 0 0)=460.     

Preparation,crystal structure and characterization of 2,4,6-trinitro-3,5-dimethylbenzoic acid monohydrate

In the present work, we synthesized 2,4,6-trinitro-3,5-dimethylbenzoic acid (TNDMBA). Single crystal of TNDMBA·H₂O was cultured from aqueous solution using a slow evaporation method at 30°C. The crystal structure was determined by X-ray single-crystal diffraction analysis. The crystal belongs to the monoclinic system with space group P2(1)/c having unit cell parameters of a = 17.24(3) Å, b = 6.032(1) Å, and c = 16.359(4) Å. There are two kinds of intermolecular H-bond interactions between H₂O and TNDMBA, which is different from typical carboxylic acids that form H-bond dimers across crystallographic centers of inversion. The title compound was characterized by FT-IR, DSC, and TG-DTG technologies, and calculated by using density functional theory (DFT) method. The calculated results show that the structural parameters from the theory are close to those of the crystal structure from the experiments. The compound is composed of three nitro groups and one carboxyl group, and it can be used as a potential energetic combustion catalyst in industry.     

Synthesis,characterization, crystal structure and cytotoxicity of 2,4-bis(selenomethyl)quinazoline

Organoselenium compounds have already been reported to be good anticarcinogenic candidates. A new selenoquinazoline derivative, 2,4-bis(selenomethyl)quinazoline (compound 1), has been synthesized, spectroscopically characterized and its crystal structure has been studied. An intermolecular coupling between C₂ and \( {\text{H}}_{5}^{\prime } \) in the Heteronuclear Multiple Bond Correlation (HMBC) experiment has been observed. Assuming that the head-to-tail overlap of parallel molecules (as identified by X-ray diffraction) remains in solution to give bimolecular entities, the π–π interaction enables heteronuclear coupling between the former atoms with a three-bond distance [C₂···(π–π)···\( {\text{C}}_{5}^{\prime } \)–\( {\text{H}}_{5}^{\prime } \)]. The crystal structure of compound 1 has been solved by X-ray diffraction. It crystallizes in triclinic system, space group P?1. Unit cell parameters are a = 7.4969(7) Å, b = 8.7008(8) Å, c = 10.1666(9) Å, α = 110.215(2)°, β = 90.354(2)°, γ = 115.017(1)°. Linear chains in crystals of compound 1 are generated by C–H···Se and Se···Se bonds between molecules. Furthermore, head-to-tail overlap of parallel molecules, in which π–π interactions can occur, is observed. Compound 1 exhibited a cytotoxic effect in all of the evaluated tumoral cell lines and showed a higher cytotoxic effect in colon and breast cancer cell lines than etoposide, which was used as a reference compound.     

2-Propylamino-5-[4-(2-hydroxy-3,5-dichlorobenzylideneamino) phenyl]-1,3,4-thiadiazole: X-ray and DFT-calculated structures

2-Propylamino-5-[4-(2-hydroxy-3,5-dichlorobenzylideneamino) phenyl]-1,3,4-thiadiazole, formulated as C₁₈H₁₆Cl₂N₄OS (I), was synthesized. The crystal and molecular structure of (I) have been determined by ¹H-NMR, IR, and X-ray single crystal diffraction. The compound (I) crystallizes in the monoclinic, space group P2(1)/c with unit cell parameters a = 9.0576(2) Å, b = 24.3382(8) Å, c = 9.0585(2) Å, M _r = 407.31, V = 1851.13(9) Å³, Z = 4, R ₁ = 0.036, and wR ₂ = 0.096. Molecular geometry from X-ray experiment of (I) in the ground state has been compared using the density functional method (B3LYP) with 6-31G(d) basis set. To determine conformational flexibility, molecular energy profile of (I) was obtained by semi-empirical (PM3) calculations with respect to selected degree of torsional freedom, which was varied from ?180° to +180° in steps of 10°. The results are indicative that the Schiff base, which contains a thiadiazole ring, prefers to be in E-configuration. In addition, molecular electrostatic potential, frontier molecular orbitals, and natural bond orbitals analysis were performed by the B3LYP/6-31G(d) method.     

Molecular and crystal structure of 15-acetylsongorine and songoramine isolated from <Emphasis Type="Italic">Aconitum szechenyianum</Emphasis> Gay

Two napelline skeletal diterpenoid alkaloids 15-acetylsongorine, C₂₄H₃₃NO₄ I, and songoramine, C₂₂H₂₉NO₃ II, were first isolated from the roots of Aconitum Szechenyianum Gay. The crystal structures were determined by X-ray single-crystal diffraction analysis. The crystal I is the triclinic system with space group P1 having unit cell parameters of a = 9.360(8) Å, b = 11.593(9) Å, c = 11.830(16) Å, α = 113.223(15)°, β = 105.950(16)°, γ = 101.296(12)°, and Z = 2. Hydrogen bonds O–H···O and O–H···N joint the molecules into dimer. The crystal II belongs to the orthorhombic system with space group P2₁2₁2₁ having unit cell parameters of a = 8.950(2) Å, b = 13.272(3) Å, c = 15.454(4) Å and Z = 4. The O–H···O hydrogen bonding interaction links the molecule into linear chains. The distortion of rings of compound I and II were evaluated by calculation of the Cremer and Pople puckering parameters. The presence of the C–O–C bond in the compound II results in the changes of ring conformations compared with that of the compound I.     

(π)C—H···S, (allyl)C—H···C(π) and π···π intermolecular interactions: synthesis, characterization, and crystal structure of 2,2′-bipyridine bis(diallyldithiocarbamato)zinc(II)

A mixed-ligand Zn(II) complex formulated as [Zn(aldtc)₂(bipy)] (aldtc=diallyldithiocarbamate; bipy=2,2′-bipyridine) was synthesized and characterized by IR, ¹H and ¹³C NMR spectral measurements and X-ray crystallography. The crystal structure of this complex indicates that Zn has a distorted octahedral geometry. The Zn—N distances are invariant (2.168(2) Å), while those of the Zn—S are slightly different (2.5408(9) and 2.5440(9) Å). The N—Zn—N, S—Zn—S and N—Zn—S bond angles are in the range 75.35(13)–99.75(7)°, 70.48(3)–161.02(5)° and 95.26(7)–160.32(7)°, respectively. The crystal packing of the complex shows different motifs of supramolecularity resulting from both hydrophilic ((π)C—H···S) and hydrophobic ((allyl)C—H···C(π)) intermolecular interactions. These interactions result in a chain arrangement of molecules along crystallographic c axis and the chains are further connected via π···π stacking along with ((π)C—H···S along b axis leading to an overall crystal packing that can be regarded as layers of complexes along bc plane, which are held together through nonconventional hydrogen bonding and π···π stacking.     

Solid-state Structures for 2-Methoxy-1,3-xylyl-18-crown-5 and 2-Methoxy-1, 3-xylyl-21-crown-6: A Search for C–H···O Interactions

Solid-state structures have been determined for 2-methoxy-1,3-xylyl-18-crown-5 (4) (monoclinic, P2₁/n, a = 11.361(3) Å, b = 8.352(3) Å, c = 18.627(4) Å, β = 91.05(2)°, Z = 4) and 2-methoxy-1,3-xylyl-21-crown-6 (5) (monoclinic, Pc, a = 9.996(2) Å, b = 11.321(2) Å, c = 8.642(2) Å, β = 100.095(4)^o, Z = 2). In both molecules, the aromatic units are tilted with respect to the polyether ring and the methoxyl methyl hydrogens are oriented toward ether oxygen atoms of the rings. The interatomic distances, particularly the H···O distance and angles provide important information regarding the strength of the C–H···O interactions.     

Solvothermal Synthesis of a New Amine-Templated Vanadium Sulfate

A new organic-templated vanadium sulfate with formula [C₄H₁₂N₂][V^III (OH)(SO₄)₂] · H₂O 1 has been prepared under solvothermal conditions by using a mixture of glycol and water as solvent. The structure of this compound was characterized by IR, element analysis, TG and single crystal X-ray diffraction. The title compound crystallizes in the space group monoclinic, P2₁/c, a = 9.290(4) Å, b = 18.264(7) Å, c = 7.132(3) Å, β = 98.149(8)°,V = 1197.88 Å³, Z = 4. Structural analysis indicates that the title compound 1 possesses a 1D chain structure formed by VO₆ octahedra and SO₄ tetrahedra.     

Platinum precursor of anticancer drug: a structure fixed by long intermolecular N–H···I and C–H···I hydrogen bonds

The title compound 1, cis-[diiodo(1R,2R)-1,2-diaminocyclohexane-κN,κN′]platinum(II), a precursor of a novel platinum-based anticancer complex, was synthesized. High purity (>99%) was determined by HPLC–UV/VIS and its structure was characterized by LC–ESI–MS, FT-IR and X-ray single-crystal diffraction. The molecules of the title compound interact via N–H···I and C–H···I intermolecular (ultra)-long hydrogen–iodine (acceptor) bonds (distances up to 3.1 Å). The crystal structure of the title compound 1 was compared to the structure calculated on the basis of density function theory (DFT). The calculated and measured data varied by a maximum of 0.09 Å in bond lengths and the maximum deviation between the compared angles were less than 2°. Experimentally measured bond lengths in the crystal were observed to be reduced when compared to the theoretical calculation. This was caused by both steric requirements of individual structural units and the presence of hydrogen bonds in real sample, which were confirmed by FT-IR (new bands as well as the band shifts to lower wavelengths).     

Structural aspects of some organoselenium compounds

The crystal structures of four organoselenium compounds, viz. bis(2-formylphenyl)diselenide (5), bis(2-methylnaphthyl)diselenide (6), organoselenenyl sulfide (7), and spiroselenurane (8) are described. Crystal data for 5: space group Pca2₁, crystal system orthorhombic, a=7.9969(4) Å, b=20.8794(12) Å, c=15.8307(13) Å, Z=8, R=0.0292. Owing to the presence of a strong Se···O interaction in compound 5 the geometry around the selenium atom may be considered as T-shaped. Crystal data for 6: space group Pna2₁, crystal system orthorhombic, a=18.2253(12) Å, b=13.0714(8) Å, c=7.7355(5) Å, Z=4, R=0.0570. The molecule has a cisoid conformation. Crystal data for 7: space group Pbcn, crystal system orthorhombic, a=22.2144(13) Å, b=8.0255(4) Å, c=15.4496(9) Å, Z=8, R=0.0292. Due to intramolecular Se···N interaction in 7 the geometry around selenium is T- shaped. Crystal data for 8: space group P2₁/c, crystal system monoclinic, a=7.4585(5) Å, b=19.5634(13) Å, c=8.0428(5) Å, β=97.1320(10)°, Z=4, R=0.0254. The O?Se?O angle is 172.86(6)°.