Configuration and conformation of substituted azetidines

Studies of compounds such as 1-cyclohexyl-2-carbomethoxy-4-methylazetidine by H-1 nmr coupling constants, nuclear Overhauser effects, C-13 steric shifts, and N-15 nmr support the revised assignment of configuration for cis/trans isomers in a series of N-alkyl substituted azetidines. The trans isomer displayed spectral characteristics consistent with a planar or nearly planar ring. The cis isomer favors a puckered ring, with major substituents at C-2 and C-4 equatorial. Compounds lacking the C-4 methyl are also puckered. Puckering angles are estimated. In contrast, trans-1-cyclohexyl-2-carboxy-4-methylazetidine (a zwitterion) prefers a puckered ring, possibly implicating the time averaged effect of nitrogen inversion on ring shape. The N-15 spectra show a large difference in chemical shift between cis and trans isomers of the azetidines, although analogous aziridines show an even larger difference.     

Oxomolybdenum(VI) complexes with glycine bisphenol [O,N,O,O′] ligand: synthesis and catalytic studies

The oxomolybdenum(VI) complex [MoOCl(L)] with a tetradentate glycine bisphenol ligand (H₃L) was prepared by reaction of [MoO₂Cl₂(DMSO)₂] with a ligand precursor in hot toluene. The product was isolated in moderate yield as separable cis and trans isomers along with the third minor component, [MoO₂(HL)]. The solid-state structure of trans-[MoOCl(L)] was determined by X-ray diffraction. The ligand has tetradentate coordination through three oxygens and one nitrogen, which is located trans to the terminal oxo whereas the sixth coordination site is occupied by a chloride. Both cis and trans isomers of [MoOCl(L)] are active catalysts for epoxidation of cis-cyclooctene and sulfoxidation of tolyl methyl sulfide. The cis isomer gave higher activity in epoxidation and sulfoxidation reactions at room temperature than the trans isomer but they performed identically at 50?°C.     

Photoisomerization of zeta-carotene stereoisomers in cells of Euglena gracilis mutant W3BUL and in solution

Abstract— Dark-grown cells of Euglena gracilis var. bacillaris bleached mutant W₃BUL are shown by a novel alumina HPLC method to accumulate a cis isomer of ζ-carotene (cis I; δ_max at 286,296,377,398,422 nm; ε_mM= 97 at 398 nm). Illumination of cells with saturating blue light converts nearly all of this to the trans isomer (δ_max at 379,400,425 nm) and a small amount of a second cis isomer (cis II; δ_max at 285.5,296, 374, 394.5, 419 nm; ε_mM= 111 at 394.5 nm) with no significant changes in any other carotenoids. Photoisomerization of the purified isomers in hexane yields the same mixture of stereoisomers in all three cases, and this mixture is similar to that produced in the cells. Photoisomerization of the purified cis isomers in hexane occurs readily with first order kinetics indicating that no additional photosensitizer or catalyst is necessary for the reaction in vivo. Wild-type cells grown in darkness in the presence of 72 μM J₃₃₄ accumulate ζ-carotene almost exclusively with approximately equal amounts of the cis I and trans isomers, thus cis I is not unique to the mutant. Cis I is identified as 15-cis-ζ-carotene by UV, visible, infrared and mass spectra; cis II may be the 13-eis isomer. Since W₃BUL also accumulates cis isomers of phytoene and phytofluene while the other carotenoids are trans, it is suggested that, in Euglena, ζ-carotene is the point of isomerization from cis to trans in the biosynthetic pathway.     

Protonenresonanz- und Röntgenstrukturuntersuchungen an unsymmetrisch substituierten Aminoboranen. III—Substituentenabhängigkeit der Struktur

A number of unsymmetrically substituted N-methylaminoboranes, each with a phenyl ring at nitrogen and boron, were synthesized. The ratio of the cis-trans isomers has been investigated by means of ¹H NMR spectroscopy and its dependence on the size of the aromatic moieties and the second substituent on boron is discussed. The structures of the compounds were established from the position of the N-methyl signal and were based on X-ray structure determinations of (4-bromophenylmethylamino) chlorophenylborane and (4-bromo-2-methylphenylmethylamino)chloro(2-methylphenyl)borane. In the case of (methylphenylamino)chlorophenylborane, the isomer with the phenyl group in cis position is highly favoured (90%) in the thermal equilibrium. Substitution of one of the phenyl groups by a 2-methyl- or 2,6-dimethylphenyl group decreases the fraction of the cis isomer. The same occurs when the chlorine substituent at boron is replaced by bromine or the methyl group. In absolute terms, the trans isomers are energetically more stable than the cis isomers only if one of the substituents at boron is a methyl or a 2,6-dimethylphenyl group or if there is a 2-methylphenyl substituent both at the nitrogen and the boron atom. Steric hindrance and electronic repulsion are probably responsible for the observed substitution effects. In addition, these experiments show that the isomer favoured in the crystal also predominates in solution.     

Synthesis and the reversed-phase HPLC analysis ofcis andtrans-dichlorobis(ethylenediamine-ruthenium) chloride isomers

Summary In this work we report the monitoring of the synthesis ofcis andtrans-dichlorobis(ethylenedia-mine)ruthenium chloride isomers by HPLC. The preparation of thecis andtrans complexes were as described in the literature with modifications arising from reversed-phase HPLC results. Thecis andtrans complexes were separated with retention times of 3.0 min and 5.5 min respectively using an ODS column (250 mm×4.6 mm i.d. 5 μm particles, Alltech) and methanol/water 45/55 ratio as mobile phase. According to HPLC results the reaction time to completion is 48 h and not 72 h as previously described. The shorter time resulted in better yield 82% and reduced by-products.     

Reactivities of cis- and trans-3-substituted acrylic acids on copolymerization with acrylamide

Several pairs of cis- and trans-3-substituted acrylic acids (3SAA) were copolymerized with acrylamide in order to determine the major factors affecting the relative reactivities of geometrical isomers of 1,2-disubstituted ethylenes (1,2-DE). The results were that the relative reactivity of cis isomer is larger than that of trans isomer when one substituent is electron-withdrawing and the other is electron-donating. The trans isomer is more reactive than the cis isomer when both substituents are electron-withdrawing. A new method of reactivity comparison of cis- and trans-1,2-DE is proposed in regard to the inductive substituent constant.     

Cis/trans ISOMERIZATION OF CAROTENOIDS BY THE TRIPLET CARBONYL SOURCE 3-HYDROXYMETHYL-3,4,4-TRIMETHYL-1,2-DIOXETANE*

Abstract— The interaction of biological carotenoids with 3-hydroxymethyl-3,4,4-trimethyl-1,2-dioxetane (HTMD), a thermodissociable source of electronically excited ketones, was investigated using reversed-phase high-performance liquid chromatography. Incubation of the all-trans isomers of β-carotene, lycopene and canthaxanthin with HTMD led to significant trans-to-cis isomerization, with cis isomers accounting for 20–50% of products formed (the balance assigned as oxidation products). The isomers forming from all-trans-β-carotene were identified as 9-cis-, 13-cis- and 15-cis-β-carotene by cochromatography of cis isomer standards and by on-line diode array absorbance spectroscopy. An HTMD-dependent cis-to-trans isomerization was observed in incubations started with 15-cis-β-carotene, and it occurred more rapidly and to a greater extent than the isomerization of all-trans-β-carotene. The isomer patterns generated from lycopene and β-carotene are generally similar to those reported recently for various human tissues (Stahl et al, 1992, Arch. Biochem. Biophys. 294 , 173–177).     

Methyl torsional potentials of rotational isomers of m-methylanisole studied by spectral hole-burning spectroscopy

Laser-induced fluorescence (LIF) excitation spectra of m-methylanisole in a supersonic jet were measured. Two series of progressions were observed in the spectrum, originating at 36048 and 36115 cm⁻¹, which were successfully assigned to the transitions to the methyl internal rotational vibronic levels of the two isomers, i.e. cis and trans isomers, with the aid of hole-burning spectrum measurements and quantum-chemical calculations. The progression for the trans isomer was observed up to the 6a₁ band, while only the 3a₁ band in addition to the 0a₁ and 1e bands was observed for the cis isomer. This finding can be explained by the conformational change upon the electronic excitation; the 60° rotation of the methyl torsional angle takes place for the trans isomer but not for the cis isomer.     

Stereochemistry-Dependent Labeling of Organelles with a Near-Infrared-Emissive Phosphorus-Bridged Rhodamine Dye in Live-Cell Imaging

The development of near-infrared (NIR) fluorophores that have both excellent chemical stability and photostability, as well as efficient cell permeability, is highly demanded. In this study, we present phospha-rhodamine (POR) dyes which display significantly improved performance for protein labeling. This is achieved by incorporating a 2-carboxy-3-benzothiophenyl group at the 9-position of the xanthene scaffold. The resulting cis and trans isomers were successfully isolated and structurally characterized using X-ray diffraction. The HaloTag ligand conjugates of the two isomers exhibited different staining abilities in live cells. While the cis isomer showed non-specific accumulation on the organelle membranes, the trans isomer selectively labeled the HaloTag-fused proteins, enabling the long-term imaging of cell division and the 5-color imaging of cell organelles. Molecular dynamics simulations of the HaloTag ligand conjugates within the lipid membrane suggested that the cis isomer is more prone to forming oligomers in the membrane. In contrast, the oligomerization of the trans isomer is effectively suppressed by its interaction with the lipid molecules. By taking advantage of the superior labeling performance of the trans isomer and its NIR-emissive properties, multi-color time-lapse super-resolution 3D imaging, namely super-resolution 5D-imaging, of the interconnected network between the endoplasmic reticulum and microtubules was achieved in living cells.     

Cationic copolymerization of anethole: Reactivity of geometric isomers of α,β-disubstituted ethylenes

Cationic copolymerizations of anethole were carried out under various conditions in order to confirm the relative reactivities of its geometric isomers. trans-Anethole was more reactive than cis-anethole in copolymerizations with p-methoxystyrene or styrene, but less reactive in the mutual copolymerization of cis- and trans-anethole; i.e., the trans isomer was more reactive to a growing chain end with little steric hindrance. Thus the intrinsic reactivity of an olefinic double bond to carbonium ion is greater for the trans isomer than for the cis isomer. This idea is supported by ¹³C NMR spectra, since the signal of the olefinic β-carbon of the trans isomer is at higher field than that of the cis isomer. The behavior of anethole was compared with the results observed in vinyl ethers, where the cis isomer was always more reactive irrrspective of the structure of the growing chain end. In addition, the dependence of monomer reactivity ratios on polymerization conditions is discussed.     

Separation,interconversion, and insecticidal activity of the cis‐ and trans‐isomers of novel hydrazone derivatives

A series of cis‐ and trans‐isomers of hydrazone derivatives were separated and analyzed through HPLC with diode‐array detection and HPLC‐MS/MS using ESI and ion trap MS. Two single crystals (A‐5‐1 and C‐2‐1) of the trans‐isomers were obtained and determined using X‐ray crystallography data, and the cis‐ to trans‐isomerization under different conditions was discussed. Both of the cis‐ and trans‐isomers of A‐4 and A‐5 exhibited good insecticidal activities against Plutella xylostella.     

Identification of cis/trans isomers of methyl ester and oxazoline derivatives of unsaturated fatty acids using GC–FTIR–MS

Identification of cis/trans isomers of unsaturated fatty acids cannot usually be achieved by GC-MS (gas chromatography-mass spectrometry) without reference substances. In this study a GC-FTIR-MS system (gas chromatography-Fourier transform-mass spectrometry) was used to identify fatty acid methyl esters (FAMEs) and differentiate between the cis/trans isomers. Besides methyl esters, 2-alkenyl-4,4-dimethyloxazoline derivatives (DMOX), which have been used to locate double bond positions of unsaturated fatty acids, were examined with respect to their suitability for cis/trans differentiation. A combined GC-FTIR-MS system with a wide band (4000–550 cm^?1) mercury cadmium telluride (MCT) detector was used in series and parallel to identify 31 reference unsaturated fatty acids, including 7 pairs of cis/trans isomers. Serum samples of healthy persons and commercially available fish oil were analyzed as examples of complex mixtures. Using splitless injection the detection limit for the less sensitive IR detector was 25 ng/μl in case of the weak cis and trans bands. In the FTIR spectra cis/trans isomers were identified by analysis of bands arising from C? H out-of-plane (oop) bending: for both the FAME and DMOX derivatives cis-1,2-disubstituted double bonds give a strong band near 720 cm^?1 and the corresponding trans isomers near 967 cm^?1. cis Isomers could be identified further by a band at 3012 cm^?1. With the combined data of the GC-FTIR-MS system it is now possible to identify polyunsaturated fatty acids with regard to the discrimination of cis/trans isomers.     

CHARACTERIZATION OF CIS- AND TRANS-DINITROBIS-(l-CYCLOHEXANEDIAMINE)-COBALT(III) CHLORIDE1

Abstract

Two geometrical isomers of [Co(l-chxn)₂(No₂)₂]Cl have been isolated. The trans-isomer is eluted first from a cellulose ion exchange column as a single isomer. The cis-isomer corresponds to the complex previously reported as the trans-isomer. The cis-isomer with the same CD sign pattern as for the trans-isomer is stereoselectively favored, but a small amount of the second cis-isomer separates using Cellex CM ion exchange cellulose. The CD spectra of the cis- and trans- isomers are similar to those of the corresponding isomers of the l-pn complex.     

A 1H NMR study of tautomerism in some 1-arylamino-3-aryliminopropenes

¹H n.m.r. spectra at ambient temperatures reveal that an equilibrium exists between the ‘all-trans’ and ‘all-cis’ isomers of some of the 1-arylamino-3-aryliminopropenes. The ‘all-cis’ isomer predominates in nonpolar solvents, whereas the ‘all-trans’ isomer is favoured in hydrogen bonding solvents. From a consideration of the magnitudes of the ³J coupling constants, it is reported that the ‘cis-trans’ isomer is the most stable form of the 4-nitrophenyl derivative in dimethyl sulphoxide.     

Direct separation and quantitative determination of glimepiride isomers by high performance liquid chromatography

A simple and sensitive high‐performance liquid chromatographic procedure for the determination of the trans isomer of glimepiride is reported. Chromatography accomplished direct separation of the cis and trans isomers of glimepiride on a Dikmonsil C18 (250×4.6 mm, 5 μm) column with a mobile phase consisting of methanol‐acetonitrile‐NH₄Ac buffer solution (1.5 mol L^–1, pH = 4.5) (1.1 : 1.3 : 1.0, v/v) at a flow rate 0.5 mL min^–1. The resolution (R_S) was 1.73 with a retention time of 24.885 and 23.018 min for the cis and the trans isomer, respectively. A standard linear calibration curve was established for the trans isomer of glimepiride over the range of 4.95–198.00 μg mL^–1 with a correlation coefficient of 0.99997. This method has been successfully used to analyze four different kinds of glimepiride product.     

RESONANCE RAMAN EVIDENCE FOR 15-cis TO MA,-trans PHOTOISOMERIZATION OF SPIRILLOXANTHIN BOUND TO A REDUCED FORM OF THE REACTION CENTER OF Rhodospirillum rubrum SI

The reaction center (RC) of Rhodospirillum rubrum SI, which was prepared by ultrafiltration, showed one peak in molecular-sieve HPLC, but it showed two peaks in diethylaminoethyl (DEAE) ion-exchange HPLC; they were named as RC-α and RC-β in the order of elution, Nonequilibrated isoelectric electrophoresis, together with DEAE ion-exchange HPLC, showed that RC-β is electronically more negative than RC-α. Oxidation of RC-β by addition of ferricyanide caused its transformation into RC-α, while reduction of RC-α by adding ascorbate and subsequent illumination caused its transformation into RC-β. Resonance Raman spectroscopy of the RC at liquid nitrogen temperature detected the all-trans and the 15-cis isomers in a ratio of 1:1, but HPLC analyses of the carotenoid extracted from the RC before and after the Raman measurements detected the pair of isomers in a ratio of 1:6. Thus, the 15-cis to all-trans isomerization takes place during irradiation at liquid nitrogen temperature, while the reverse isomerization takes place in the dark. The isolated RC-α and RC-β exhibited the bleaching of the 868 nm band, and contained the H, M and L subunits and 1.2-1.4 molecules of ubiquinone-10 per RC. Each RC slowly equilibrated in the dark toward a mixture of RC-α and RC-β. Generation of the all-trans isomer in the light was found not in RC-α but in RC-β.     

A Conformational Study of Cyclohexane‐1,3,5‐tricarbonitrile Derivatives

Cyclohexane‐1,3,5‐tricarbonitrile reached equilibrium having 1,3‐cis‐1,5‐cis and 1,3‐cis‐1,5‐trans isomers in a ratio of 3:7. The cis, cis‐isomer preferred the conformation with three equatorial cyano groups, where as the cis, trans‐isomer displayed two cyano groups on equatorial positions and another cyano group on axial position. Condensation of cis, cis‐cyclohexane‐1,3,5‐tricarbonitrile with L‐(S)‐valinol by the catalysis of ZnCl₂ in refluxing 1,2‐dichlorobenzene afforded two isomeric cyclohexane‐1,3,5‐trioxazolines in favor of the 1,3‐cis‐1,5‐trans isomer. Metalation of cis, cis‐cyclohexane‐1,3,5‐tricarbonitrile, followed by alkylations with dimethyl sulfate, benzyl bromide or allyl bromide, gave the cor responding trialkylation products with predominance of 1,3‐cis‐1,5‐trans isomers. The cis, trans‐isomer showed two cyano groups on axial positions and another cyano group on equatorial position, where as the cis, cis‐isomer exhibited three axial cyano groups. Treatment of trimethyl cis, cis‐cyclohexane‐1,3,5‐tricarboxylate with lithium diisopropylamide and dimethyl sulfate afforded mainly the trimethyl ester of Kemp's triacid, which showed three axial carboxylate groups. Two competitive factors, i.e. the steric effect of in coming electrophiles and the dipole‐dipole inter actions of the cyano or carboxylate groups, might inter play to give different stereoselectivities in these reaction systems.     

Trennung und Charakterisierung von β-Carotin-Isomeren

Separation and Characterization of the cis-Isomers of β,β-Carotene A stable HPLC. system is described allowing the excellent separation of 11 different cis-isomers of β,β-carotene from the all-trans compound. The system is applied to the analysis of cis/trans mixtures obtained from plant extracts and by photoisomerization of the all-trans isomer. Al₂O₃ is used as the stationary phase while hexane with controlled H₂O content is utilized as the mobile phase. With the aid of the optimum conditions 8 sufficiently stable cis isomers were isolated and their structures shown to be the 9-, 13- and 15-cis, the 9,9′-, 9, 13-, 9, 13′- and 13,13′-di-cis and, tentatively, the 9,13,13′-tri-cis β,β-carotenes by application of 270-MHz-FT.-¹H-NMR. spectroscopy.     

1H–13C HMBC NMR experiments as a structural and analytical tool for the characterization of elusive trans/cis hydroperoxide isomers from oxidized unsaturated fatty acids in solution

The radical-dependent oxidation of unsaturated fatty acids is a fundamental reaction in lipid chemistry, biochemistry, and technology. We report herein the first successful application of ¹H–¹³C HMBC NMR experiment for the identification and quantification of complex and minor (3.9% to 0.85%) components of cis and trans primary hydroperoxide isomers of oxidized oleate and linoleate methyl esters in solution, without the need of laborious isolation of the individual components.