超原子理论计算基团电负性的研究

依据Bratsch计算基团电负性的方程,根据Pauling原子电负性标度,提出了一种计算较大基团电负性的方法,该方法基于超原子思想。使用该方法做了大量的基团计算,并和引用其他文献计算结果做对比,结果表明提出的方法更加适用于计算较大的基团。     

基团电负性研究Ⅶ 基团电负性与R-X键的键裂能

化学键的键裂能(也称离解能)定义为在标准条件下:键均裂前后各个物种生成热的代数和,即:DH~0(R—X)=△tH_(208)~0(X·())+△fH_(298)~0(R·())—△fH_(298)~0,(RX())(1) 因此测量化学键的键裂能等价于测量自由基的生成热。Benson等经过近三十年,准确测     

基团电负性与烷基衍生物的标准汽化热

基团电负性与烷基衍生物的标准汽化热韩长日（湖北师范学院化学系黄石４３５００２）关键词：标准汽化热，基团电负性，烷基衍生物前言汽化热是反映液体分子间相互作用力大小的重要热力学参数。尽管热力学数据的实验积累要比化学其它领域的数据的实验积累丰富得多，但对于...     

新原则下大学有机化学中“特性基团化合物”的命名

从特性基团的概念出发,详细介绍了新版《有机化合物命名原则2017》中的特性基团的高位（优先）次序、最低位次（组）、CIP顺序等规则,并结合具体实例与1980版对应规则进行了对比分析,以便广大师生尽快适应并运用新原则开展学术交流与教学实践。     

基团电负性研究 VI. 基团电负性与烷基衍生物的标准生成热

本文试用前文建立的基团电负性, 通过研究ΔΔFH°(RX/CH3X)与基团电负性xG的定量关系, 从而建立一个简单方法用以计算几乎所有烷基衍生物RX(X=F, OH, Cl, NH2,Br, SH, I, OH3)的标准生成热。     

基团电负性研究 VI. 基团电负性与烷基衍生物的标准生成热

本文试用前文建立的基团电负性, 通过研究ΔΔFH°(RX/CH3X)与基团电负性xG的定量关系, 从而建立一个简单方法用以计算几乎所有烷基衍生物RX(X=F, OH, Cl, NH2,Br, SH, I, OH3)的标准生成热。     

电负性均衡

电负性是分子中一个原子把电子拉向它自身的能力,是化学理论的基本概念之一。继Pauling建立第一个电负性标度后,提出了众多的电负性标度。只是在密度泛函理论的基础上,电负性概念和电负性均衡原理,才被精密地论证。近二十多年来,电负性理论的重要发展是:应用电负性均衡模型或方法,可以快速地计算分子体系的电荷分布,从而确定分子的其他性质,甚至包括分子的结构和反应性指标。通常的电负性均衡方法只把分子划分到原子区域,虽然简单直观,但其精度和应用范围受到限制。原子与键电负性均衡方法,把分子划分到包括原子区域、化学键区域和孤对电子区域,能够较快速精密地计算分子的电荷分布和其他性质,并被应用到构建新一代可极化或浮动电荷力场的探索中,有广阔的应用前景。     

基团电负性与含氧有机物的标准生成热

本文利用作者提出的基团电负性,建立了一个计算含氧有机物标准生成热的简单方法: △fH°(RZ)=△fH°(CH_3Z)-(0.48 n~(1/2)+17.18)x_G-20.13n+69.71式中,△fH°(RZ)和△fH°(CH_3Z)分别为含氧有机物RZ和CH_3Z的标准生成热;Z-OE_e、OM_e、OH、COCH_3、CHO、CO_2H、CO_2Me、CO_2Et.CONH_2;x_G为基团Z的电负性;n是直链烷基R中的碳原子个数,48个可比较值的平均偏差为0.3kCal/mol。     

含环氧基团的聚合物载体合成方法的改进及其固定化青霉素酰化酶

 以 Span-60 和 Tween-20 为复合分散剂, 以 N,N′-亚甲基双丙烯酰胺为交联剂, 以甲基丙烯酸缩水甘油酯和烯丙基缩水甘油醚为功能性单体, 用反相悬浮聚合技术成功制备了含环氧基团的聚合物载体, 并用红外光谱和低温氮吸附对聚合物载体进行了表征. 以 Span-60 和 Tween-20 为复合分散剂, 替代原有的 Span-60 和硬脂酸钙复合分散剂, 大幅度减少了后处理过程中所需的时间和溶剂用量, 使固定化青霉素酰化酶的活性从 215 U/g 提高到 320 U/g. 与游离酶相比, 该固定化酶具有较好的操作稳定性, 在 pH = 5~11 和不高于 50 oC 的环境中具有较好的稳定性. 固定化酶的水解反应动力学过程与游离酶相同, 均遵循米氏反应动力学, 而且活性与底物浓度密切相关. 当底物浓度为 6.5% 时, 固定化酶的活性最高, 达到 353 U/g.     

Electronegativity equalization method: parameterization and validation for organic molecules using the Merz-Kollman-Singh charge distribution scheme

The electronegativity equalization method (EEM) was developed by Mortier et al. as a semiempirical method based on the density-functional theory. After parameterization, in which EEM parameters A(i), B(i), and adjusting factor kappa are obtained, this approach can be used for calculation of average electronegativity and charge distribution in a molecule. The aim of this work is to perform the EEM parameterization using the Merz-Kollman-Singh (MK) charge distribution scheme obtained from B3LYP/6-31G* and HF/6-31G* calculations. To achieve this goal, we selected a set of 380 organic molecules from the Cambridge Structural Database (CSD) and used the methodology, which was recently successfully applied to EEM parameterization to calculate the HF/STO-3G Mulliken charges on large sets of molecules. In the case of B3LYP/6-31G* MK charges, we have improved the EEM parameters for already parameterized elements, specifically C, H, N, O, and F. Moreover, EEM parameters for S, Br, Cl, and Zn, which have not as yet been parameterized for this level of theory and basis set, we also developed. In the case of HF/6-31G* MK charges, we have developed the EEM parameters for C, H, N, O, S, Br, Cl, F, and Zn that have not been parameterized for this level of theory and basis set so far. The obtained EEM parameters were verified by a previously developed validation procedure and used for the charge calculation on a different set of 116 organic molecules from the CSD. The calculated EEM charges are in a very good agreement with the quantum mechanically obtained ab initio charges.     

Molecular electronegativity in density functional theory (II) --Direct calculation of group electronegativity and the atomic charges in a group

On the basis of a more precise expression of the atomic effective electronegativity deduced from the density functional theory and electronegativity equalization principle, a new scheme for calculating the group electronegativity and the atomic charges in a group is proposed and programed, and various parameters of electronegativity and hardness are given for some common atoms. Through calculation, analysis and comparison of more than one hundred groups, it is shown that the results from this scheme are reasonable and may be extended.     

Optimized and parallelized implementation of the electronegativity equalization method and the atom-bond electronegativity equalization method

The most common way to calculate charge distribution in a molecule is ab initio quantum mechanics (QM). Some faster alternatives to QM have also been developed, the so-called "equalization methods" EEM and ABEEM, which are based on DFT. We have implemented and optimized the EEM and ABEEM methods and created the EEM SOLVER and ABEEM SOLVER programs. It has been found that the most time-consuming part of equalization methods is the reduction of the matrix belonging to the equation system generated by the method. Therefore, for both methods this part was replaced by the parallel algorithm WIRS and implemented within the PVM environment. The parallelized versions of the programs EEM SOLVER and ABEEM SOLVER showed promising results, especially on a single computer with several processors (compact PVM). The implemented programs are available through the Web page http://ncbr.chemi.muni.cz/~n19n/eem_abeem.     

小分子配位对血红素活性影响的原子-键电负性均衡方法研究

应用原子-键电负性均衡方法, 计算了血红素与小分子的配位络合物的电荷分布和Fukui函数. 血红素与氧、水、一氧化碳和一氧化氮结合时, 铁离子电荷转移到配体原子上. 活性中心铁离子的Fukui函数均大于氧和水配体中的配位氧原子, 而小于一氧化碳和一氧化氮配体中的配位碳和配位氮原子的Fukui函数. 从Fukui函数可以得出, 一氧化碳和一氧化氮很难从它们与活性中心血红素结合的配位络合物中解离出来, 而氧和水易于从它们与血红素结合的配位络合物中解离出来, 进而, 血红素可以再与其它配体结合. 血红素与KCN和NaN3抑制剂作用时, 铁离子的Fukui函数均小于与其配位的碳和氮原子, 表明在过氧化氢酶中血红素的活性作用减弱或被抑制.     

分子ABEEM电荷分布的图形表示

利用Matlab软件编写程序, 将基于密度泛函理论和电负性均衡原理发展的原子-键电负性均衡方法σ-π模型(ABEEM σ-π)计算的电荷分布, 特别是键电荷和孤对电子的电荷分布, 用图形表现出来, 对分子的电荷分布给出直观形象的认识, 并以腺嘌呤、腺嘌呤脱氧核苷酸以及丙烯与氯化氢的马氏亲电加成反应为例, 进行应用说明.     

价电子均衡电负性及其应用

We take the contribution of all valence electrons into consideration and propose a new valence electrons equilibration method to calculate the equalized electronegativity including molec-ular electronegativity, group electronegativity, and atomic charge. The ionization potential of alkanes and mono-substituted alkanes, the chemical shift of ¹H NMR, and the gas phase proton affinity of aliphatic amines, alcohols, and ethers were estimated. All the expressions have good correlations. Moreover, the Sanderson method and Bratsch method were modified on the basis of the valence electrons equilibration theory. The modified Sanderson method and modified Bratsch method are more effective than their original methods to estimate these properties.     

原子-键电负性均衡方法参数的确定与探讨

原子-键电负性均衡方法(ABEEM)是以密度泛函理论(DFT)和电负性均衡原理为基础发展而来，它明确地考虑了化学键是不引入任何实验数据的带纯理论性和计算的方法．使用统一标准并具有代表性和全面性地选择了200多个模型分子，利用可得到较准确结构的MP2／6-31G*优化结构，心／STO-3G单点计算得到Mulliken重叠布居，再用最小二乘法拟合得到许多主族元素在分子体系中的诸原子(包括单、双和叁键等不同成键状态)和化学键的ABEEM参数．所得到的原子的价态电负性可与已提出的其他电负性标度相比拟，计算CO得到的电荷负端为C(与从头计算的结果相反)，结果与实验相符，且原子电荷的正负不完全由原子电负性决定．     

应用原子-键电负性均衡方法预测超氧化物歧化酶催化反应的活性部位

应用原子-键电负性均衡方法计算了超氧化物歧化酶的电荷分布和Fukui函数. 结果表明, 超氧化物歧化酶活性中心与超氧阴离子自由基作用时, 金属离子电荷转移在0.1 e～0.3 e之间, 而配体原子等的电荷转移却很小; 同时金属离子的Fukui函数大于配位原子的Fukui函数. 超氧化物歧化酶活性中心与抑制剂作用失活后, 金属离子的Fukui函数小于抑制剂中配位原子的Fukui函数. 电荷转移和Fukui函数表明, Mn, Fe和Cu离子分别是含锰、铁和铜锌超氧化物歧化酶的活性中心部位, 该预测不仅与量子化学理论计算一致, 而且与实验现象相吻合.     

Calculation of molecular energies by atom-bond electronegativity equalization method

The atom-bond electronegativity equalization method (ABEEM), based on the equalization of the “effective electronegativity” of an atom or a bond in a molecule, allows the direct calculation of the charge distribution and the molecular electronegativity of a large molecule. We now demonstrate how the another important quantity, the total molecular energy, can be computed directly and rapidly. It is shown that, based on the ABEEM, the corresponding ab initio values of the total molecular energy can be reproduced with very satisfactory accuracy. In addition, it has been found that in the expression of the energy functional E[ρ] of the ABEEM, the charge-dependent term C correlates quite well with the total molecular bonding energy.