Self-assembly of long chain alkanes and their derivatives on graphite

We combine scanning tunneling microscopy (STM) measurements with ab initio calculations to study the self-assembly of long chain alkanes and related alcohol and carboxylic acid molecules on graphite. For each system, we identify the optimum adsorption geometry and explain the energetic origin of the domain formation observed in the STM images. Our results for the hierarchy of adsorbate-adsorbate and adsorbate-substrate interactions provide a quantitative basis to understand the ordering of long chain alkanes in self-assembled monolayers and ways to modify it using alcohol and acid functional groups.     

Towards a molecular theory of phase transitions in fatty acid monolayers

A molecular theory of phase transitions in fatty acid monolayers at the air/water interface is proposed based on rotational ordering of molecules about their longitudinal axes. The first order statistical mechanical lattice model of Bell, Mingins, and Taylor (BMT ) which is an equilibrium diluted Ising model is used to describe the monolayer behavior of some simple aliphatic carboxylic acids. The interaction energy parameters in the BMT model are adjusted to give reasonable agreement with the experimentally observed chain length dependence, and the energies thus obtained are compared with those calculated for interacting aliphatic carboxylic acid dimers by the technique of perturbative configuration interaction using localized orbitals (PCILO ). It is concluded that intermolecular rotational ordering due to the anisotropy of the intermolecular potential plays a significant role in simple fatty acid monolayer phase behavior. A possible experimental test of the model is briefly described.     

Miscibility and segregated structures in mixed Langmuir monolayers

The phase behavior and morphology of segregated structures are considered for mixed Langmuir monolayers, which comprise a type of supramolecular polymer having a complex internal structure mixed with a long chain fatty acid. We fabricated two different series of mixed monolayers from a polyglutamate (PG) copolymer having 30% octadecyl ester side chains and 70% methyl ester side chains and fatty acids. These mixed monolayers deposited on a solid substrate were studied by pressure-area diagram measurements, X-ray analysis, and atomic force microscopy. Stearic acid (STA) and hexacosanoic acid (HCA) with alkyl chain lengths of 17 and 25 carbon atoms, respectively, were used as low molecular weight components. For the mixture PG:STA, where the length of the STA molecules is comparable to the length of the PG side chains, we observed the formation of partially miscible monolayers. These mixtures exhibit a nanometer scale domain morphology formed by the STA molecules dissolved in the outer shell of the PG monolayer. In contrast, for the PG:HCA mixture we observed a strong tendency for microphase separation and the formation of well-defined submicron segregated structures in the monolayers. Lateral compression of the mixed monolayers to a point close to the collapse pressure promotes microphase separation in both types of mixed monolayers with the formation of anisotropic surface morphology and oriented domains.     

Highly selective enzymatic kinetic resolution of primary amines at 80 degrees C: a comparative study of carboxylic acids and their ethyl esters as acyl donors

Optimization of the kinetic resolution of 2-amino-4-phenyl-butane was achieved at 80 degrees C using CAL-B-catalyzed aminolysis of carboxylic acids and their ethyl esters. The reactions carried out with long chain esters and the corresponding acids as acyl donors proceeded with remarkably high enantioselectivity. The use of carboxylic acids as acylating agents led to a marked acceleration of the reaction rate compared to their ester counterparts. Lauric acid led to enantiomeric excesses superior to 99.5% for both the remaining amine and the corresponding lauramide at 50% conversion (reached in 3 h). These optimized conditions were applied to the resolution of a series of aliphatic and benzylic amines.     

Effect of chain length on the assembly of mercaptoalkanoic acid multilayer films ligated through divalent Cu ions

The structural stability of alkenthiolate monolayers assembled on gold surfaces is a result of the well-defined organization of the individual molecules within the film. The formation of three-dimensional films assembled by stacking multiple molecular monolayers is substantially more challenging because the correct organization of the molecular components is required not only within the individual monolayers but also between the monolayers of the film. In this paper we examine the structure of multilayer films based on mercaptoalkanoic acid monolayers in which ligation between adjacent monolayers is achieved using the interaction of carboxylic acid and thiol groups with a divalent Cu ion. Using contact angle analysis and atomic force microscopy, we show that the use of Cu(2+) has profound implications on the properties and structure of the multilayer film. In particular, the divalent ions effectively prohibit the complete assembly of the next monolayer. For multilayer SAMs assembled from short alkane chains with six methylene groups, we find that molecules in the incomplete adlayer organize themselves randomly over the underlying monolayer. However, as the number of methylene groups increases (11 and 16 methylene groups), the upper layer tends to fracture into discrete islands which cover around 50% of the surface. The height of these islands is found to be equal to that expected for a complete, well-ordered monolayer assembled from the equivalent mercaptoalkanoic acid molecules. This relationship between chain length and island growth results from the migration of molecules into ordered aggregates driven by the reduction of free energy associated with maximizing intermolecular interactions.     

Scanning tunneling microscopy studies of monolayer templates: alkylthioethers and alkylethers

Scanning tunneling microscopy has been used to determine the molecular ordering in stable, ordered monolayers formed from long-chain normal and substituted alkanes in solution on highly oriented pyrolytic graphite surfaces. Monolayers were initially formed using an overlying solution of either a symmetrical dialkylthioether or a symmetrical dialkylether. Initially pure thioether solutions were then changed to nearly pure solutions of the identical chain-length ether, and vice versa. The direct application of a pure solution of long-chain symmetrical ethers onto graphite produced a lamellate monolayer within which the individual molecular axes were oriented at an angle of approximately 65 degrees to the lamellar axes. In contrast, a pure solution of long-chain symmetrical thioethers on graphite produced a monolayer within which the molecular axes were oriented perpendicular to the lamellar axes. When ethers were gradually added to solutions overlying pure thioether monolayers, the ethers substituted into the existing monolayer structure. Thus, the ether molecules could be forced to orient in the perpendicular thioether-like manner through the use of a thioether template monolayer. Continued addition of ethers to the solution ultimately produced a nearly pure ether monolayer that retained the orientation of the thioether monolayer template. However, a monolayer of thioether molecules formed by gradual substitution into an ether monolayer did not retain the 65 degrees orientation typical of dialkylethers, but exhibited the 90 degrees orientation typical of dialkylthioether monolayers. The thioethers and ethers were easily distinguished in images of mixed monolayers, allowing both an analysis of the distribution of the molecules within the mixed monolayers and a comparison of the monolayer compositions with those of the overlying solutions. Substitution of molecules into the template monolayer did not proceed randomly; instead, a molecule within a monolayer was more likely to be replaced by a molecule in the overlying solution if it was located next to a molecule that had already been replaced.     

p-nitrophenyllaurate: a substrate for the high-performance liquid chromatographic determination of lipase activity

Many assay procedures have been devised to measure lipolytic activity, but none is without problems. It is for this reason that new methods are still being proposed. In this work we have investigated the use of two esters of p-nitrophenol, the palmitic acid and lauric acid esters, as substrates for a highly sensitive high-performance liquid chromatographic method. Data on recovery, specific activity and reproducibility are reported only for the lauric ester, because the palmitic ester turned out to be a very poor substrate.     

Scanning tunneling microscopy of prochiral anthracene derivatives on graphite: chain length effects on monolayer morphology

The morphology of monolayers formed upon adsorption of prochiral 1,5-substituted anthracene derivatives on highly oriented pyrolytic graphite is investigated using scanning tunneling microscopy at the liquid-solid interface. The adsorption orientation of these prochiral anthracene derivatives positions one of their enantiotopic faces in contact with the graphite. The molecules adsorb in rows with contact between adjacent anthracenes. The anthracene side chains extend perpendicular to the direction of the row repeat. All molecules within a single row adsorb via the same enantiotopic face. Anthracenes with side chains containing an even number of non-hydrogenic atoms (C, S) form monolayers in which molecules in adjacent rows adsorb via opposite enantiotopic faces. Anthracenes with side chains that contain an odd number of non-hydrogenic atoms form two-dimensional chiral domains in which all rows contain molecules adsorbed via the same enantiotopic face. This chain length effect on monolayer morphology represents a generalized example of structural effects previously observed in alkanoic acid monolayers formed on HOPG. The variation of the STM current with position in the vicinity of the anthracenes indicates that the highest occupied molecular orbital is the predominant mediator of tunneling for the aromatic group.     

Characterization of long-chain carboxylic esters with CH3OBOCH 3 + in a small fourier-transform ion cyclotron resonance mass spectrometer

The usefulness of CH₃OBOCH ₃ ⁺ as a chemical ionization reagent was examined by allowing the ion to react with carboxylic esters of various chain lengths in a small Fourier-transform ion cyclotron resonance mass spectrometer equipped with a permanent magnet. CH₃OBOCH ₃ ⁺ is a strong electrophile and readily abstracts an oxygen-containing group from the carboxylic esters. Long-chain esters exclusively lose the alkoxide moiety to give the acylium ion. The same reaction was observed for saturated, unsaturated, branched and cyclic esters. In each case, the acylium ion reacts further with a neutral ester molecule by proton transfer to yield the protonated ester as a secondary product. This remarkably simple product distribution reveals the molecular weight of the ester, the chain length of its acid moiety, and the degree of unsaturation in the acid and alcohol moieties.     

The role of intermolecular and molecule-substrate interactions in the stability of alkanethiol nonsaturated phases on Au(111)

The structure and stability of alkanethiols self-assembled on Au(111) have been studied as a function of the molecular chain length by means of atomic force microscopy (AFM) and grazing incidence X-ray diffraction (GIXD). Below saturation, phases consisting of molecules with different tilt angles and periodicities are formed. Differences in the mechanical stability of these phases are revealed by AFM experiments and discussed in terms of the competition between intermolecular and molecule-substrate interactions as a function of chain length. For long molecules, intermolecular interactions play a dominant role which stabilizes the formation of closed packed 30 degrees tilted ( radical 3x radical 3)R30 degrees structures. For short molecules, the van der Waals interaction with the gold substrate favors the formation of a 50 degrees tilted phase in which the molecules are arranged in a rectangular configuration.     

FABES and FAPES – transesterification of triglycerides with higher alcohols. Quantitation and mass spectrometric evaluation

In order to facilitate the gas chromatographic determination of butyric as well as other short chain fatty acids, triglycerides containing these fatty acids were transbutylated and transpentylated to give FABES (fatty acid butyl esters) and FAPES (fatty acid pentyl esters), respectively. This method allows the molecular weight of the compounds to be increased while their polarity is decreased. Short chain esters elute sufficiently separated from the solvent; due to the decreased polarity, elution of long chain fatty acids is only slightly retarded compared to the corresponding methyl esters. Quantitative evaluation over a large series of injections proved the linearity of correction factors in both cases, FABES and FAPES, with a slight deviation for 16:0 and 18:0, respectively. Structural characterization was performed by GC/MS. It was shown that there are characterstic fragmentations for FABES as well as for FAPES. The El-mass spectra give structural information about the alcohol and acid moieties, the ester molecule and the Cl-spectra indicate the molecular weight. The absence of abundant highly characteristic peaks in the spectra of these esters makes the detection of FABES or FAPES in complex mixtures more difficult than the detection of FAMES with their very characteristic ions at m/z 74 and 87.     

GC—MS analysis of carboxylic acids in petroleum after esterification with fluoroalcohols

The GC–MS characteristics of carboxylic acid esters prepared from fluorine-containing alcohols were compared to those of methyl esters. The GC retention of 2,2,2-trifluoroethyl (TFE) esters was less than, and 2,2,3,3,4,4,4-heptafluoro-1-butyl (HFB) esters was approximately equivalent to that of methyl esters. Mass spectra of TFE and HFB aliphatic esters show significantly more intense molecular and key fragment ions than those of methyl esters. Also, owing to their significantly higher molecular weights, TFE or HFB ester molecular ions and most fragment ions of interest occur at significantly higher m/z values than most potential interfering ions. Data for about 70 individual TFE and HFB esters are reported. Application of the methodology to a petroleum-derived carboxylic acid concentrate resulted in identification of straight chain, isoprenoid, methyl-substituted straight chain (2-, 3-, 5-,10-, 12-positions along chain), and dimethyl-substituted straight chain acids containing from 11 to 22 carbons. Benzoic acid and homologs with up to 3-carbons in alkyl substitutents were minor components in the sample. The procedure provided for forming TFE and HFB esters from free acids requires less time and effort than a previously reported method, while retaining its capability for achieving essentially quantitative conversion. Free hydroxyl groups in alcohols and phenols are converted to trifluoroacetate esters concurrently with formation of TFE/HFB carboxylic acid esters. The reaction products, including compounds with two functional groups (diacids, salicylic acid, etc.), chromatograph well on conventional nonpolar GC stationary phases.     

Adsorption geometry of 4-picoline chemisorbed on the Cu(110) surface: a study of forces controlling molecular self-assembly

The adsorption of 4-picoline (4-methylpyridine) on the Cu(110) surface has been studied with time-of-flight electron stimulated desorption ion angular distribution (TOF-ESDIAD) and other methods. Using deuterium labeling in the methyl group and hydrogen labeling on the aromatic ring, it has been possible to separately monitor by TOF-ESDIAD the C-D bond directions and the C-H bond directions in the adsorbed molecule. These triangulation measurements have led to a detailed understanding of the conformation of the adsorbed molecule relative to the Cu(110) crystal lattice, allowing one to witness changes in the molecular conformation as adsorbate-adsorbate interactional effects take place for increasing coverages. At low coverages, the molecule adsorbs by the N atom at an atop Cu site with the aromatic ring parallel to the <001> azimuth and with the molecular axis inclined 33 (+/- 5) degrees along the <001> azimuth. As rows of 4-picoline molecules form long range ordered chain structures oriented along the <112> azimuth, the aromatic ring twists 29 degrees about the inclined molecular axis as a result of forces between the adsorbate molecules. The initial tilting of the molecular axis at low coverage is likely due to the interaction of the positive-outward dipole with its image in the substrate. The ring twist may result from dipoleminus signdipole forces between the adsorbate molecules in the rows formed tending to form nested parallel pyridine rings. These studies are the first to apply the TOF-ESDIAD method for the measurement of the direction of chemical bonds at more than one molecular location within an adsorbed molecule and the new method is named electron stimulated desorption-molecular triangulation (ESD-MT). The results obtained give information of importance in understanding the factors which control conformational effects during the molecular self-assembly of complex adsorbed molecules on surfaces.     

Self-assembled monolayers of alkanoic acids on the native oxide surface of SS316L by solution deposition

Stainless steel 316L is a widely used biomaterial substrate whose biocompatibility could be improved by surface modification. As a first step in this process, self-assembled monolayers of octanoic acid, octadecylcarboxylic acid, 16-hydroxyhexadecanoic acid, 12-aminododecanoic acid, and 1,12-dodecane dicarboxylic acid have been formed on the native oxide surface of stainless steel 316L by a simple, one-step solution deposition method. The ordering, close-packing, and coverage of the monolayers formed were characterized by diffuse reflectance infrared spectroscopy, contact angle measurements, and atomic force microscopy. The same procedure was applicable for all long alkyl chain carboxylic acids. This process formed chemically and mechanically stable monolayers. These carboxylic acids formed a bidentate bond with the stainless steel substrate. Robust chemical attachment of the acids to stainless steel through a simple process provides a stepping stone to improving the biocompatibility of stainless steel 316L.     

Structural evolution of hexa-peri-hexabenzocoronene adlayers in heteroepitaxy on n-pentacontane template monolayers

The growth and structure of self-assembled adlayers of hexakis(n-dodecyl)-peri-hexabenzocoronene (HBC-C12) adsorbed on highly ordered pyrolitic graphite (HOPG) decorated by an n-pentacontane (n-C50H102) monolayer have been investigated by scanning tunneling microscopy (STM). Whereas on HOPG the HBC-C12 molecules readily self-assemble into a unique stable 2D structure, on the [n-C50H102 monolayer/graphite] system we observe morphological phase transitions with formation of time dependent alpha, beta, and gamma phases (alpha-->beta-->gamma). The initial alpha-phase is similar to that obtained on bare graphite, while intermediate beta- and final gamma-structures present molecular dimers and rows, respectively. The observed two-dimensional polymorphism is due to weak interaction between HBC-C12 molecules and n-C50H102-modified graphite substrate. Our results constitute an important step toward the control of the growth and structure of highly ordered monolayers of functional conjugated molecules by modifying the graphite surface with an n-alkane monolayer of appropriate chain length.     

Molecular simulation studies of the structure of phosphorylcholine self-assembled monolayers

We report a study of the structure of phosphorylcholine self-assembled monolayers (PC-SAMs) on Au(111) surfaces using both molecular mechanics (MM) and molecular dynamics (MD) simulation techniques. The lattice structure (i.e., packing densities and patterns) of the PC chains was determined first, by examining the packing energies of different structures by MM simulations in an implicit solvent. The chain orientation (i.e., antiparallel and parallel arrangements of the PC head groups) was then evaluated. The initial azimuthal angles of the PC chains were also adjusted to ensure that the optimal lattice structure was found. Finally, the two most probable lattice structures were solvated with explicit water molecules and their energies were compared after 1.5 ns of MD simulations to verify the optimal structures obtained from MM. We found that the optimal lattice structure of the PC-SAM corresponds to a radical7 x radical7 R19degree lattice structure (i.e., surface coverage of 50.4 A(2)molecule) with a parallel arrangement of the head groups. The corresponding thickness of the optimal PC-SAM is 13.4 A which is in agreement with that from experiments. The head groups of the PC chains are aligned on the surface in such a way that their dipole components are minimized. The P-->N vector of the head groups forms an angle of 82 degrees with respect to the surface normal. The tilt direction of molecular chains was observed to be towards their next nearest neighbor.     

Structure and reactivity of mixed omega-carboxyalkyl/alkyl monolayers on silicon: ATR-FTIR spectroscopy and contact angle titration

The structure, reactivity, and acid-base properties of mixed monolayers prepared by photochemical reaction of hydrogen-terminated silicon with mixtures of ethyl undecylenate and n-alkenes were studied by ATR-FTIR spectroscopy and contact-angle measurements. The surface composition of the mixed monolayers and its correlation with the hydrolysis reactivity of terminal ethoxycarbonyl (ester) groups were investigated by systematically varying the mole fraction of ethyl undecylenate and the chain length of the unsubstituted alkenes in the binary deposition solution. It has been shown that the mole fraction of ester groups on the surface deviates only slightly from the mole fraction of ethyl undecylenate in the solution. The efficiency of ester hydrolysis under acidic conditions is significantly influenced by the monolayer structure, i.e., the surface density of ester groups and length of the unsubstituted alkyl chains. In addition, we find that mixed omega-alkanoic acid/alkyl monolayers on silicon (prepared via hydrolysis) exhibit well-defined contact angle titration curves from which the surface acid dissociation constants were determined. The results were compared with the acid-base properties reported in the literature for carboxylic acid-terminated alkylsiloxane monolayers on hydroxylated silicon and for omega-mercaptoalkanoic acid/alkanethiolate monolayers on gold. The weak pKa dependence (deltapKa approximately 1) on the surface density of carboxylic acid groups and on the length of unsubstituted alkyl chains is attributed to variations of the microenvironment of the acid moieties. These experimental findings provide fundamental knowledge at the molecular level for the preparation of bioreactive surfaces of controlled reactivity on crystalline semiconductor substrates.     

长链烷烃分子吸附增强效应的STM图像理论研究

STM实验发现长链烷烃分子能够改善多种有机分子的吸附性能,本文利用CVFF力场对长链烷烃与石墨吸附体系进行了分子力学模拟,用半经验ZINDO/1,AM1方法对烷基取代酞菁和卟啉的STM形貌反差机制进行了研究。理论计算表明,长链烷烃分子与基底的吸附作用增强了分子的吸附稳定性,而烷烃分子间的二维结晶作用使取代酞菁和卟啉分子形成密排的二维有序结构。前线轨道电子密度和STM实验结果比较证明,分子核部分的电子性质和烷基部分的几何结构决定了取代酞菁和卟啉分子的STM形貌反差。     

Light induced interactions of benzo[a]pyrene with carboxylic acids

Abstract The in vitro photochemical behaviour of benzo[a]pyrene (BP) in presence of short and long chain carboxylic acids is studied. The direct irradiation (295–400 or 320–400 nm) of BP in solution in the presence of saturated carboxylic acids destroys more than 70% of this carcinogen in 72 h with a 150 W Xe arc lamp. Consumption of BP alone under similar conditions is less than 10%. The principal product resulting from direct interaction of BP with carboxylic acids is characterized as 6-acyloxybenzo[a]pyrene by means of UV, IR, NMR and mass spectroscopy. The other pathways of destruction may involve polymerization. Saturated fatty acids are shown to favour photoacyloxyation, while unsaturated fatty acids appear to facilitate polymerization of BP. The effect of different factors, such as the carboxylic acid involved, solvent, and wavelength on photoacyloxylation reaction as well as on the consumption of BP is discussed. Photoinduced interaction of BP with carboxylic acids seems to involve radical cation as well as free radicals of the hydrocarbon. Biological properties of BP esters in terms of primary irritancy and carcinogenic activity have also been tested by mouse skin assay. Both long and short chain esters do not show any carcinogenic activity; conversely, long chain esters are shown to be more severe irritants as compared to short chain esters or BP.     

Complexity in the self-assembly of bifunctional molecules on HOPG: the influence of solvent functionality on self-assembled structures

Self-assembled monolayers of bifunctional molecules HOOC(CH2)nCOOH (n = 20, 18, 16, 14, 12, 10), HOOC(CH2)nCH2OH (n = 13, 14), and HOCH2(CH2)14CH2OH dissolved in octanoic acid were investigated using scanning tunneling microscopy, to understand the self-assembly of bifunctional molecules and the influence of a carboxylic acid solvent on the formation of self-assembled structures on HOPG. In the series of di-acids (HOOC(CH2)nCOOH), only HOOC(CH2)20COOH forms stable coadsorption structures with the solvent octanoic acid. The remaining di-acids form stable single-component monolayers and do not coadsorb with solvent octanoic acid. Coadsorption structures involving mixtures of di-acids were observed. This result suggests that coadsorption with acid solvent or with other di-acids occurs to maximize hydrogen-bond density in the overlayer. A quantitative model based on this concept is proposed. For hetero-bifunctional molecules HOOC(CH2)nCH2OH (n = 13, 14), the coadsorption of HOOC(CH2)14CH2OH and octanoic acid at the molecular level produces a microscopic mesh made of homogeneously arranged openings with a dimension of approximately 12.5 A x approximately 5.0 A x approximately 1.8 A. For the hetero-bifunctional molecule HOOC(CH2)13CH2OH, hydroxyl groups of two adjacent lamellae assemble to form a herringbone geometry, and the two carboxylic acid groups assemble with a straight head-to-head configuration. In addition, a new mixed hydrogen-bonding network of COOH...O-H was observed in another self-assembled structure of this molecule. The bifunctional molecule HOCH2(CH2)14CH2OH exhibits multiple packing patterns on HOPG via different hydrogen-bonding networks. HOCH2(CH2)14CH2OH self-assembles using the H-O...O-H network typical of the n-alcohol herringbone structure, forming an asymmetric adsorbate on HOPG. It also forms domains with another hydrogen-bonding network, in which molecules in adjacent lamellae are parallel to each other. This investigation demonstrates the complexity and diversity of self-assembled structures formed from bifunctional molecules on solid surfaces. It also indicates that a solvent with the same functional group as the solute can significantly impact the formation of the self-assembled structures of these bifunctional molecules.