Vibrational spectra of 1,1,3,3-tetramethyl-2-nitroguanidine and their interpretation with the use of scaling of quantum-chemical force field

The IR (4000–50 cm⁻¹) and Raman (3500–170 cm⁻¹) spectra of solid 1,1,3,3-tetramethyl-2-nitroguanidine (TMNG) were obtained. The spectra were interpreted using the scaling of the TMNG quantum-chemical force field in the B3LYP/6-311G(d,p) approximation. Transferable scale factors necessary for the interpretation of spectra of more complex related compounds were determined. The scaled harmonic force field is supposed to be used in the analysis of the available gas-phase electron diffraction data for TMNG. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 3, pp. 495–498, March, 2008.     

FT-IR, FT-Raman, vibrational assignments, and density functional studies of 1,2,4-triazole-3-carboxylic acid, and its tautomers, dimers

The molecular geometry, relative energy, and vibrational properties (harmonic wavenumbers, total energy distributions) of several plausible tautomers and homodimers of 1,2,4-triazole-3-carboxylic acid (TCA) molecule were analyzed by applying the density functional theory (DFT), with the B3LYP functional and the 6-311++G(d,p) basis set. FT-IR and FT-Raman spectra of the biomolecule TCA were recorded in the regions 4000–100 cm⁻¹ and 3500–100 cm⁻¹, respectively. The calculated vibrational wavenumbers were compared with IR and Raman experimental data. The atomic charges and the dimer forms of the most stable tautomer were also discussed.     

Calculation of normal vibrations of adenine and its deuterium-substituted analogs

The vibrational spectra of adenine and its deuterium-substituted analogs are calculated in the valence force field approximation. The frequencies and forms of normal vibrations of the molecule at 1700–300 cm^-1 are interpreted. Translated fromZhumal Struktumoi Khimii, Vol. 38, No. 2, pp. 324–333, March–April, 1997.     

Intermolecular potentials and force constants from ab initio energies – Application to the N-H…O=C hydrogen bonds in formamide dimers

The ab initio energies and force constants of 38 geometrically optimized formamide dimers which differ in the lengths of the hydrogen bonds, are evaluated using the program GAUSSIAN 90 with the 6–31G** basis set. A potential energy function was fitted simultaneously to the dimerization energies (including vibrational energy contributions to association energies) and the force constants of the N-H…O=C bridge. As an application, the broadening of the signals in vibrational spectra of liquid formamide was simulated by a superposition of spectra of different formamide oligomers. Received: 12 November 1996 / Revised: 27 May 1997 / Accepted: 27 May 1997     

Vibrational spectra and rotational isomerism of bis(N-2-chloroethyl)nitramine

The IR and Raman spectra of bis(N-2-chloroethyl)nitramine (BCENA) in the liquid and crystalline states and in CCl₄ and CH₃CN solutions are studied. The spectra are compared, and it is concluded that BCENA exists as a mixture of conformers of different polarities in the liquid state and as one less polar conformer in the crystalline state. To determine the conformations corresponding to the total electron energy minima and interpret the vibrational spectrum of BCENA, we performed an ab initio quantum chemical calculation of the BCENA molecule in the Hartree-Fock approximation using the 3–21G* and 6–31G* basis sets. Out of twelve possible conformations five are stable; the most stable conformer is C₂(GG). The frequencies and forms of normal vibrations of stable conformers are calculated using scaled quantum chemical force fields. The calculated and experimental frequencies are compared, and the relations between the frequencies of skeletal stretching and bending vibrations are analyzed. It is concluded that the BCENA crystal is formed by the C₂ (GG) conformer. The vibrational spectrum is interpreted, and the frequencies are assigned to vibrations of conformers differing in form. Translated fromZhumal Struktumoi Khimii, Vol. 38, No. 2, pp. 303–317, March–April, 1997.     

Vibrational assignment of the spectral data and thermodynamic properties of 2-chloro-4-fluorobenzophenone using DFT quantum chemical calculations

The FT-Raman (3500-100 cm⁻¹) and FT-IR (4000-450 cm⁻¹) spectra of 2-chloro-4-fluorobenzophenone were recorded in the solid phase. Density functional theory calculations with B3LYP/6-31G (d, p) basis set was used to determine the ground state molecular geometries (bond lengths and bond angles), harmonic vibrational frequencies, infrared intensities and Raman activities of this compound. Potential energy distributions (PEDs) and normal modes, for the spectral data computed at B3LYP/6-31G (d, p) level, have also been obtained from force-field calculations. The wavenumbers found after scaling of the force field showed very good agreement with the experimentally determined values. A comparison of the theoretical spectra and experimental FT-IR and FT-Raman spectra of the title molecule has been made and full vibrational assignments of the observed spectra have been proposed. On the basis of vibrational analyses, the thermodynamic properties of title compound at different temperatures have been calculated.     

Ab initio study of molecular structure and internal rotation in methyldicyanophosphine and methyldiisocyanophosphine. The Raman spectrum of methyldicyanophosphine and its interpretation with the use of scaling ofab initio force fields

The equilibrium geometric parameters and structures of transition states of internal rotation for the molecules of methyldicyanophospine MeP(CN)₂ and its isocyano analog MeP(NC)₂ were calculated by the RHF and MP2 methods with the 6–31G^* and 6–31G^** basis sets. At the MP2 level, the total energy of cyanide is −35 kcal mol⁻¹ lower than that of isocyanide and the barriers to internal rotation of methyl group for MeP(CN)₂ and MeP(NC)₂ are 2.2 and 2.7 kcal mol⁻¹, respectively. For both molecules, the one-dimensionalab initio potential functions of internal rotation approximated by a truncated Fourier series were used to determine the frequencies of torsional transitions by solving direct vibrational problems for a non-rigid model. The Raman spectrum of crystalline MeP(CN)₂ was recorded in the range 3500–50 cm⁻¹. The vibrational spectra of this compound were interpreted by scalingab initio force fields calculated by the RHF and MP2 method. The vibrational spectrum of methyldiisocyanophosphine was predicted with the use of the obtained scale factors. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 1703–1714, September, 1998.     

Synthesis,molecular conformation,vibrational, electronic transition,and chemical shift assignments of 4-(thiophene-3-ylmethoxy)phthalonitrile: a combined experimental and theoretical analysis

This work presents the synthesis and characterization of a novel compound, 4-(thiophene-3-ylmethoxy)phthalonitrile (TMP). The spectroscopic properties of the compound were examined by FT-IR, FT-Raman, NMR, and UV techniques. FT-IR and FT-Raman spectra in solid state were observed in the region 4000–400 cm⁻¹ and 3500–50 cm⁻¹, respectively. The ¹H and ¹³C NMR spectra were recorded in CDCl₃ solution. The UV absorption spectrum of the compound that dissolved in THF was recorded in the range of 200–800 nm. The structural and spectroscopic data of the molecule in the ground state were calculated using density functional theory (DFT) employing B3LYP exchange correlation and the 6-311++G(d,p) basis set. The vibrational wavenumbers were calculated and scaled values were compared with experimental FT-IR and FT-Raman spectra. The complete assignments were performed on the basis of the experimental results and total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanics (SQM) method. Isotropic chemical shifts (¹³C NMR and ¹H NMR) were calculated using the gauge-invariant atomic orbital (GIAO) method. A study on the electronic properties, such as HOMO and LUMO energies, were performed by time-dependent DFT (TD-DFT) approach. The HOMO and LUMO analyses have been used to elucidate information regarding charge transfer within the molecule. Comparison of the calculated frequencies, NMR chemical shifts, absorption wavelengths with the experimental values revealed that DFT method produces good results.     

The thermodynamic properties of delta-lactones

The enthalpies of formation of δ-hexanolactone and δ-nonanolactone were determined by combustion calorimetry. Conformational analysis and quantum-chemical calculations of equilibrium structures, fundamental vibrations, moments of inertia, and total energies were performed for δ-pentanolactone (I), δ-hexanolactone (II), and δ-nonanolactone (III) by the B3LYP/6-311G(d,p), B3LYP/6-311++G(d,p), and G3MP2 methods. The experimental IR spectra and calculated vibrational frequencies were used to suggest the assignment of vibrational frequencies of stable conformations. The thermodynamic properties of I–III in the ideal gas state were determined over the temperature range 0–1500 K. A thermodynamic analysis of mutual isomerization in the gas and liquid phases over the temperature range 298.15–900 K and liquid-phase polymerization of γ- and δ-pentanolactones and 4-pentenoic acid over the temperature range 298.15–500 K was performed.     

Vibrational analysis of 4-amino pyrazolo (3,4-d) pyrimidine A joint FTIR, Laser Raman and scaled quantum mechanical studies

The FTIR and Laser Raman spectra of 4-amino pyrazolo (3,4-d) pyrimidine have been measured in the regions 4000–400 cm⁻¹ and 3500–100 cm⁻¹, respectively. Utilizing the observed FTIR and Laser Raman data, a complete vibrational assignment and analysis of the fundamental modes of the title compound were carried out. The vibrational frequency which were determined experimentally are compared with those theoretically from force field calculation based on ab initio HF/6−311+G**(d,p) and standard B3LYP/6−311+G**(d,p) methods and basis set combinations for optimized geometries. The observed FTIR and Laser Raman vibrational frequencies were analysed and compared with the theoretically predicted vibrational frequencies. The assignments of bands to various normal modes of the molecules were also carried out. A detailed interpretation of the infrared and Raman spectra of 4-amino pyrazolo (3,4-d) pyrimidine [4AP(3,4-D)P] is also reported based on total energy distribution (TED). The calculated HOMO and LUMO energies shows that charge transfer occur within the molecule. The theoretical FT-IR and FT-Raman spectra for the title molecule have also been constructed.     

Vibrational spectroscopic and conformational studies of 1-(4-pyridyl)piperazine

Possible stable conformers of the 1-(4-pyridyl)piperazine (1-4pypp) molecule were experimentally and theoretically studied by FT-IR and Raman spectroscopy. FT-IR and Raman spectra were recorded in the region of 4000–200 cm⁻¹. Optimized geometric structures related to the minimum on the potential energy surface were investigated by the B3LYP hybrid density functional theory method using the 6-31G(d) basis set. Comparison of the experimental and theoretical results indicates that the density functional B3LYP method provides satisfactory results for the prediction of vibrational wavenumbers and structural parameters and equatorial-equatorial (e-e) isomer is supposed to be the most stable form of the 1–4pypp molecule.     

Crystallographic analysis of atomic structures and the phenomenological mechanism of crystallization

A theoretical study of the structure and vibrational spectrum of methyl-β-D-glucopyranoside is performed with allowance for the hydrogen bond effect on them. At the density functional theory level with the use of the B3LYP functional in the 6–31G(d) basis set the structural dynamic models of a free molecule of methyl-β-D-glucopyranoside and its simplest complexes with hydrogen bonding in the form of dimers with different structures are constructed. Energies are minimized; structures, electro optical parameters, force constants, and normal vibrational frequencies in the harmonic approximation and their intensities in IR spectra are calculated; the hydrogen bond energy is estimated. Based on the calculation, the conclusions are drawn about the structure of the methyl-β-D-glucopyranoside sample, the formation and interpretation of its IR spectrum, and the possibilities of the used density functional theory method.     

Experimental and Theoretical Investigation of the Proton-Bound Dimer of Lysine

The structure of the proton-bound lysine dimer has been investigated by infrared multiple photon dissociation (IRMPD) spectroscopy and electronic structure calculations. The structures of different possible isomers of the proton-bound lysine dimer have been optimized at the B3LYP/6-31 + G(d) level of theory and IR spectra calculated using the same computational method. Based on relative Gibbs free energies (298 K) calculated at the MP2/aug-cc-pVTZ//B3LYP/6-31 + G(d) level of theory, LL-CS01, and followed closely (1.1 kJ mol^–1) by LL-CS02 are the most stable non-zwitterionic isomers. At the MP2/aug-cc-pVTZ//6-31 + G(d) and MP2/aug-cc-pVTZ//6-31 + (d,p) levels of theory, isomer LL-CS02 is favored by 3.0 and 2.3 kJ mol^–1, respectively. The relative Gibbs free energies calculated by the aforementioned levels of theory for LL-CS01 and LL-CS02 are very close and strongly suggest that diagnostic vibrational signatures found in the IRMPD spectrum of the proton-bound dimer of lysine can be attributed to the existence of both isomers. LL-ZW01 is the most stable zwitterionic isomer, in which the zwitterionic structure of the neutral lysine is well stabilized by the protonated lysine moiety via a very strong intermolecular hydrogen bond. At the MP2/aug-cc-pVTZ//B3LYP/6-31 + G(d), MP2/aug-cc-pVTZ//6-31 + G(d) and MP2/aug-cc-pVTZ//6-31 + G(d,p) levels of theory, the most stable zwitterionic isomer (LL-ZW01) is less favored than LL-CS01 by 7.3, 4.1 and 2.3 kJ mol^–1, respectively. The experimental IRMPD spectrum also confirms that the proton-bound dimer of lysine largely exists as charge-solvated isomers. Investigation of zwitterionic and charge-solvated species of amino acids in the gas phase will aid in a further understanding of structure, property, and function of biological molecules.     

Conformational structure of divinylacetylene

Ab initio quantum chemical calculations of the divinylacetylene molecule with different mutual orientations of vinyl groups are carried out using the 6–31G*/MP2 basis set. The torsional potential is approximated by a Fourier series. It is shown that the second term of the series dominates. The enthalpies of the cis- and trans-isomers are nearly equal; the maximum corresponds to the gosh-orientation (180.4 cm⁻¹ with respect to the cis-form). The vibrational spectra of the compounds with cis-, gosh-, and trans-orientations of vinyl groups are analyzed based on the ab initio calculations. It is concluded that the experimental data available in the literature agree with the hypothesis that divinylacetylene exists as cis- and trans-isomers. Translated fromZhumal Strukturnoi Khimii, Vol. 39, No. 4, pp. 610–617, July–August, 1998.     

Ab initio HF and DFT calculations on an organic non-linear optical material

The molecular geometric optimization, vibrational frequencies, and gauge-including atomic orbital (GIAO) ¹H and ¹³C chemical shift values of 3-[(1E)-N-ethylethanimidoyl]-4-hydroxy-6-methyl-2H-pyran-2-one have been investigated by using ab initio Hartree–Fock (HF) and density functional method (B3LYP: Becke-3-Lee–Yang–Parr) with 6–31G(d) and 6–31++G(d,p) basis sets. Also, the first hyperpolarizabilities have been calculated at the HF and B3LYP levels employing the corresponding basis sets. To understand this phenomenon in the context of molecular orbital picture, we examined the molecular HOMOs and molecular LUMOs generated via HF and B3LYP levels. The computed vibrational frequencies are used to determine the types of molecular motions associated with each of the experimental bands observed. Data of 3-[(1E)-N-ethylethanimidoyl]-4-hydroxy-6-methyl-2H-pyran-2-one display significant second-order molecular nonlinearity and provide the basis for design of efficient nonlinear optical materials.     

Ab initio and infrared spectral study of 4′-substituted phenylthiolbenzoates

The geometry of the 4′-cyano-(4′-CNPTB) and the 4′-methoxy-(4′-MePTB) phenylthiolbenzoates were obtained by ab initio calculations employing 6–31G basis set at Hartee-Fock level of theory. The results predict an extended form of the molecules and torsional angle between the phenyl rings at 90.85(6)⁰ and 90.87(3)⁰, respectively. On the basis of vibrational analysis the frequency assignment was carried out. The calculated frequencies were compared with the experimental IR spectral data in carbon tetrachloride, carbon disulfide solutions and in solid state.     

Density functional theory study on (F2AlN3) n (n = 1–4) clusters

Possible geometrical structures and relative stabilities of (F₂AlN₃) _n (n = 1–4) clusters were studied using density functional theory at the B3LYP/6-311+G* level. The optimized clusters (F₂AlN₃) _n (n = 2–4) possess cyclic structure containing Al–N_α–Al linkages, and azido in azides has linear structure. The IR spectra of the optimized (F₂AlN₃) _n (n = 1–4) clusters have three vibrational sections, the whole strongest vibrational peaks lie in 2218–2246 cm⁻¹, and the vibrational modes are N₃ asymmetric stretching vibrations. Trends in thermodynamic properties with temperature and oligomerization degree n are discussed, respectively. A study of their thermodynamic properties suggests that monomer 1A forms the most stable clusters (2A, 3A, and 4B) can occur spontaneously in the gas phase at temperatures up to 800 K.     

IR Spectra of N,N′-Ethylene-Bis(salicylaldiminates) and N,N′-ethylene-Bis(acetylacetoniminates) of Ni(II), Cu(II), and Zn(II)

Vibrational spectra of N,N′-ethylene-Bis(salicylaldiminaates) and N,N′-ethylene-Bis(acetylacetoniminates) of nickel (II), copper (II), and zinc (II) are studied experimentally (IR spectroscopy, 400–4000 cm⁻¹) and theoretically (B3LYP), band assignment is given, and the distribution of potential energy of normal vibrations in internal coordinates is studied. Differences between vibrational spectra of the complexes are discussed. Thermodynamic functions of gas-phase complexes corresponding to temperatures of 298 and 800 K are calculated.     

Density functional theory study of vibrational spectra, and assignment of fundamental vibrational modes of succinimide and N-bromosuccinimide

This work deals with the vibrational spectroscopy of succinimide and N-bromosuccinimide. The mid and far FTIR and FT-Raman spectra were measured in the condensed state. The fundamental vibrational frequencies and intensity of vibrational bands were evaluated using density functional theory (DFT) using standard B3LYP/6-31G(*) and B3LYP/6-311+G(**) methods and basis set combinations. The vibrational spectra were interpreted, with the aid of normal coordinate analysis based on a scaled quantum mechanical force field. The infrared and Raman spectra were also predicted from the calculated intensities. Comparison of simulated spectra with the experimental spectra provides important information about the ability of the computational method to describe the vibrational modes. Unambiguous vibrational assignment of all the fundamentals were made using the total energy distribution (TED).