Oligodeoxyribonucleotides Containing 4-Aminobenzimidazole in Place of Adenine: Solid-phase synthesis and base pairing

Oligonucleotides containing 4-aminobenzimidazole 2′-deoxyribofuranoside (1,3-dideaza-2′-deoxyadenosine; c¹c³A_d, 1 ) were synthesized. For this purpose, various NH₂-protecting groups were investigated, and the [(9H-fluoren-9-yl)methoxy]carbonyl group was selected for phosphoramidite protection (→ 4c ). Apart from the phosphoramidite 3 , the phosphonate 2 was prepared. Compound 1 was incorporated in a homooligonuclectide as well as in oligomers containing naturally occurring nucleosides. The T_m values and the thermodynamic data of various duplexes ( 11 · 10 , 17 · 10 , 18 · 10 ) containing 4-aminobenzimidazole were determined. Although d[(c¹c³A)₂₀] ( 11 ) does not form a Hoogsteen duplex with d(T₂₀) ( 10 ) as observed with d[(c¹A)₂₀], it destabilizes the Watson-Crick duplexes to a much smaller extent than it was expected from a bulged loop structure. Apparently, 4-aminobenz-imidazole interacts with regular nucleoside residues within a Watson-Crick duplex structure, most likely by vertical stacking. According to the low basicity of the amino group, only weak H-bonding is expected.     

1-(2′-Deoxy-β-D-xylofuranosyl)cytosine: Base pairing of oligonucleotides with a configurationally altered sugar-phosphate backbone

Solid-phase synthesis of the oligo(2′-deoxynucleotides) 19 and 20 containing 2′-deoxy-β-D -xylocytidine ( 4 ) is described. For this purpose, 1-(2-deoxy-β-D -threo-pentofuranosyl)cytosine ( = 1-(2-deoxy-β-D -xylofuranosyl)-cytosine; 4 ) was protected at its 4-NH₂ group with a benzoyl (→ 5 ) or an isobutyryl (→ 8 ) residue, and a dimethoxytrityl group was introduced at 5′-OH (→ 7, 10 ; Scheme 2). Compounds 7 and 10 were converted into the 3′-phosphonates 11a,b . While 19 could be hybridized with 21 and 22 under formation of duplexes with a two-nucleotide overhang on both termini ( 19 · 21 : T_m 29°; 19 · 22 : T_m 22°), the decamer 20 bearing four xC_d residues could no longer be hybridized with one of the opposite strands. Moreover, the oligonucleotides d[(xC)₈? C] ( 13 ), d[(xC)₄? C] ( 14 ), d[C? (xC)₄? C] ( 15 ), and d[C? (xC)₃? C] ( 16 ) were synthesized. While 13 exhibits an almost inverted CD spectrum compared to d(C₉) ( 17 ), the other oligonucleotides show CD spectra typical for regular right-handed single helices. At pH 5, d[(xC)₈? C] forms a stable hemi-protonated duplex which exhibits a T_m of 60° (d[(CH⁺)₉] · d(C₉): T_m 36°). The thermodynamic parameters of duplex formation of ( 13H ⁺ · 13 ) and ( 17H ⁺ · 17 ) were calculated from their melting profiles and were found to be identical in ΔH but differ in ΔS ( 13H ⁺ · 13 : ΔS = ?287 cal/K mol; 17H ⁺ · 17 : ΔS = ?172 cal/K mol).     

1,7-Dideaza-2′-deoxyadenosine: Building blocks for solid-phase synthesis and secondary structure of base-modified oligodeoxyribonucleotides

The 1,7-dideaza-2′-deoxyadenosine (c¹c⁷A_d; 1 ) was converted into building blocks 3a , b for solid-phase oligodeoxyribonucleotide synthesis. Testing various N-protecting groups – benzoyl, phenoxyacetyl, [(fluoren-9-yl)methoxy]carbonyl, and (dimethylamino)methylidene – only the latter two were found to be suitable ( 1 → 4b, d ). Ensuing 4,4′-dimethoxytritylation of 4d and phosphitylation afforded the 3′-phosphonate 3a or the 3′-[(2-cyanoethyl)diisopropylphosphoramidite] 3b . Self-complementary oligonucleotides with alternating dA or c¹c⁷A_d and dT residues ( 7 and 8 ) as well as palindromic oligomers such as d(C-G-C-G-c¹c⁷ A-c¹c⁷ A-T-T-C-G-C-G) ( 10 ) and d(G-T-A-G-c¹c⁷ A-c¹c⁷ A-T-T-C-T-A-C) ( 12 ) were synthesized. Duplex stability was decreased because 1 cannot form Watson-Crick or Hoogsteen base pairs if incorporated into oligonucleotides. On the other hand, the structural modifications in 10 and 12 forced these palindromic oligomers to form hairpin structures.     

Oligonucleotide Analogues with Integrated Bases and Backbone. Part 17

The formation of cyclic duplexes (pairing) of known oxymethylene‐linked self‐complementary U*[o]A⁽*⁾ dinucleosides contrasts with the absence of pairing of the ethylene‐linked U*[c_a]A⁽*⁾ analogues. The origin of this difference, and the expected association of U*[x]A⁽*⁾ and A*[x]U⁽*⁾ dinucleosides with x=CH₂, O, or S was analysed. According to this analysis, pairing occurs via constitutionally isomeric Watson–Crick, reverse Watson–Crick, Hoogsteen, or reverse Hoogsteen H‐bonded linear duplexes. Each one of them may give rise to three diastereoisomeric cyclic duplexes, and each one of them can adopt three main conformations. The relative stability of all conformers with x=CH₂, O, or S were analysed. U*[x]A⁽*⁾ dinucleosides with x=CH₂ do not form stable cyclic duplexes, dinucleosides with x=O may form cyclic duplexes with a gg‐conformation about the C(4′)? C(5′) bond, and dinucleosides with x=S may form cyclic duplexes with a gt‐conformation about this bond. The temperature dependence of the chemical shift of H? N(3) of the self‐complementary, oxymethylene‐linked U*[o]A⁽*⁾ dinucleosides 1 – 6 in CDCl₃ in the concentration range of 0.4–50 mM evidences equilibria between the monoplex, mainly linear duplexes, and higher associates for 3 , between the monoplex and cyclic duplexes for 6 , and between the monoplex, linear, and cyclic duplexes as well as higher associates for 1, 2, 4 , and 5 . The self‐complementary, thiomethylene‐linked U*[s]A⁽*⁾ dinucleosides 27 – 32 and the sequence isomeric A*[s]U⁽*⁾ analogues 33 – 38 were prepared by S‐alkylation of the 6‐(mesyloxymethyl)uridine 12 and the 8‐(bromomethyl)adenosine 22 . The required thiolates were prepared in situ from the C(5′)‐acetylthio derivatives 9, 15, 19 , and 25 . The association in CHCl₃ of the thiomethylene‐linked dinucleoside analogues was studied by ¹H‐NMR and CD spectroscopy, and by vapour‐pressure osmometric determination of the apparent molecular mass. The U*[s]A⁽*⁾ alcohols 28, 30 , and 31 form cyclic duplexes connected by Watson–Crick H‐bonds, while the fully protected dimers 27 and 29 form mainly linear duplexes and higher associates. The diol 32 forms mainly cyclic duplexes in solution and corrugated ribbons in the solid state. The nucleobases of crystalline 32 form reverse Hoogsteen H‐bonds, and the resulting ribbons are cross‐linked by H‐bonds between HOCH₂? C(8/I) and N(3/I). Among the A*[s]U⁽*⁾ dimers, only the C(8/I)‐hydroxymethylated 37 forms (mainly) a cyclic duplex, characterized by reverse Hoogsteen base pairing. The dimers 34 – 36 form mainly linear duplexes and higher associates. Dimers 34 and particularly 38 gelate CHCl₃. Temperature‐dependent CD spectra of 28, 30, 31 , and 37 evidence π‐stacking in the cyclic duplexes. Base stacking in the particularly strongly associating diol 32 in CHCl₃ solution is evidenced by a melting temperature of ca. 2°.     

Duplex Stability of 7-Deazapurine DNA: Oligonucleotides containing 7-bromo- or 7-iodo-7-deazaguanine

The oligonucleotide building blocks, the phosphonates 1a, b and the phosphoramidites 2a, b derived from 7-iodo- and 7-bromo-7-deaza-2′-deoxyguanosines 3a, b were prepared. They were employed in solid-phase oligonucleotide synthesis of the alternating octamers d(Br⁷c⁷G-C)₄ ( 8 ) and d(I⁷c⁷G-C)₄ ( 9 ) as well as the homo-oligonucleotides d[(Br⁷c⁷G)₅-G] ( 11 ) and d[(I⁷c⁷G)₅-G] ( 12 ). The melting profiles and CD spectra of oligonucleotide duplexes were measured. The T_m values as well as the thermodynamic data were determined and correlated to the major-groove modification of this DNA. The self-complementary octamers 8 and 9 form more stable duplexes compared to the parent oligomer d(G-C)₄. The heteroduplex of d[(I⁷c⁷G)₅-G] ( 12 ) with d(C₆) is slightly destabilized (ΔT_m = ?12°) over that of d[(c⁷G)₅-G] with d(C₆). However, the complex of 12 with poly(C) is more stable than that of d[(c⁷G₅-G)] with poly(C).     

Dipyrido[3,2-a:2′,3′-c]phenazine-Tethered Oligo-DNA: Synthesis and Thermal Stability of Their DNA⋅DNA and DNA⋅RNA Duplexes and DNA⋅DNA⋅DNA Triplexes

Dipyrido[3,2-a:2′,3′-c]phenazine (dppz) derivatives were conjugated to 9-mer and 18-mer DNA (ODN) at a site without nucleobase, either at the 5′- or 3′-end or at a internucleotide position, via linkers of 7, 12, or 18 atoms lengths. These dppz-linked ODNs were synthesized using novel backbone glycerol phosphoramidites: Glycerol, serving as artificial nucleoside without nucleobase, was modified to amines 10 , 23 , and 24 , which were suitable for the subsequent key reaction with dppz-carboxylic acid 3 (Schemes 2 and 3). The products of these reactions (see 5 – 7 ) were then transformed to the standard phosphoramidite derivatives (see 27 , 29 , and 30 ) or used for loading on a CPG support (see 28 , 31 , and 32 ). The dppz-modified ODNs were subsequently assembled in the usual manner using automated solid-phase DNA synthesis. The 9-mer ODN-dppz conjugates 35 – 43 were tested for their ability to form stable duplexes with target DNA or RNA strands (D11 ( 60 ) or R11 ( 61 )), while the 18-mer ODN-dppz conjugates 48 – 56 were tested for their ability to form stable triplexes with a DNA target duplex D24⋅D24 ( 62 ) (see Tables 1 and 2). The presence of the conjugated dppz derivative increases the stability of DNA⋅DNA and DNA⋅RNA duplexes, typically by a ΔT_m of 7.3 – 10.9° and 4.5 – 7.4°, respectively, when the dppz is tethered at the 5′- or 3′-terminal (Table 2). The dppz derivatives also stabilize triplexes when attached to the 5′- or 3′-end, with a ΔT_m varying from 3.8 – 11.1° (Table 3). The insertion of a dppz building block at the center of a 9-mer results in a considerably poorer stability of the corresponding DNA⋅DNA duplexes (ΔT_m=0.5 to 4.2°) and DNA⋅RNA duplexes (ΔT_m=−1.5 to 0.9°), while the replacement of one interior nucleotide by a dppz building unit in the corresponding 8-mer ODN does not reveal the formation of any duplex at all. Different types of modifications in the middle of the 18-mer ODN, in general, do not lead to any triplex formation, except when the dppz derivative is tethered to the ODN through a 12-atom-long linker (Entry 9 in Table 3).     

Formation and Crystal Structure of [(F5TeOXe)+·SO2ClF][Sb(OTeF5)6-]

Xe(OTeF₅)₂ reacts with Sb(OTeF₅)₃ under the formation of [Xe₂(OTeF₅)₃]⁺[Sb(OTeF₅)₆]^-. From SO₂ClF solution a yellow solvate [F₅TeOXe]⁺·SO₂ClF· [Sb(OTeF₅)₆]^- is formed with the crystal data: a = 1028.1(1), b = 1040.9(1), c = 1780.2(3) pm, α = 98.07(1), β = 97.68(1), γ = 105.82(1)°, space group . The O-Xe···O fragment is essentially linear (176.1(2)°), and the two Xe-O distances are quite different 197.1(4) and 242.6(4) pm.     

Metal Derivatives of 1,3‐Imidazolidine‐2‐thione with Divalent d10 Metal Ions (Zn–Hg) : Synthesis and Structures

Reactions of divalent Zn‐Hg metal ions with 1,3‐imidazolidine‐2‐thione (imdtH₂) in 1 : 2 molar ratio have formed monomeric complexes, [Zn(η¹‐S‐imdtH₂)₂(OAc)₂] ( 1 ), [Cd((η¹‐SimdtH₂)₂I₂] ( 2 ), [Cd(η¹‐S‐imdtH₂)₂Br₂] ( 3 ), and [Hg(η¹‐S‐imdtH₂)₂I₂] ( 4 ). Complexes 1 – 4 , have been characterized by elemental analysis (C, H, N), spectroscopy (IR, ¹H, NMR) and x‐ray crystallography ( 1 ‐ 4 ). Hydrogen bonding between oxygen of acetate and imino hydrogen of ligand, {N(2)–H(2C)···O(2)^#} in 1 , ring CH and imino hydrogen, {C(2A)–H(2A)···Br(2)^#} in 3 have formed H‐bonded dimers. Similarly, the interactions between molecular units of complexes 2 and 4 have yielded 2D polymers. The polymerization occurs via intermolecular interactions between thione sulfur and imino hydrogen, {N(2)–H(2)···S(1)^#}, imino hydrogen and the iodine atom, {NH(1)···I(2)^#} in 2 and imino hydrogen – iodine atom {N(2A)–H(2A)···I(2)} and I···I interaction in 4 . Crystal data: [Zn(η¹‐S‐imdtH₂)₂(OAc)₂] ( 1 ), C₁₀H₁₈N₄O₄S₂Zn, orthorhombic, Pbcn, a = 9.3854(7) Å, b = 12.4647(10) Å, c = 13.2263(11) Å; V = 1547.3(2) ų, Z = 4, R = 0.0280 [Cd((η¹‐S‐imdtH₂)₂I₂] ( 2 ), C₆H₁₂CdI₂N₄S₂, orthorhombic, Pnma, a = 13.8487(10) Å, b = 14.4232(11) Å, c = 7.0659(5) Å; Z = 4, V = 1411.36(18) ų, R = 0.0186.     

Oligonucleotide Analogues with Integrated Bases and Backbone. Part 16

The self‐complementary, ethylene‐linked U*[c_a]A⁽*⁾ dinucleotide analogues 8, 10, 12, 14, 16 , and 18 , and the sequence‐isomeric A*[c_a]U⁽*⁾ analogues 20, 22, 24, 26, 28 , and 30 were obtained by Pd/C‐catalyzed hydrogenation of the corresponding, known ethynylene‐linked dimers. The association of the ethylene‐linked dimers was investigated by NMR and CD spectroscopy. The U*[c_a]A⁽*⁾ dimers form linear duplexes and higher associates (K between 29 and 114M ^?1). The A*[c_a]U⁽*⁾ dimers, while associating more strongly (K between 88 and 345M ^?1), lead mostly to linear duplexes and higher associates; they form only minor amounts of cyclic duplexes. The enthalpy–entropy compensation characterizing the association of the U*[c_x]A⁽*⁾ and A*[c_x]U⁽*⁾ dimers (x=y, e, and a) is discussed.     

Oligonucleotide Analogues with Integrated Bases and Backbone. Part 15

The self‐complementary (Z)‐configured U*[c_e]A⁽*⁾ dinucleotide analogues 6, 8, 10, 12, 14 , and 16 , and the A*[c_e]U⁽*⁾ dimers 19, 21, 23, 25, 27 , and 29 were prepared by partial hydrogenation of the corresponding ethynylene linked dimers. Photolysis of 14 led to the (E)‐alkene 17 . These dinucleotide analogues associate in CDCl₃ solution, as evidenced by NMR and CD spectroscopy. The thermodynamic parameters of the duplexation were determined by van't Hoff analysis. The (Z)‐configured U*[c_e]A⁽*⁾ dimers 14 and 16 form cyclic duplexes connected by Watson–Crick H‐bonds, the (E)‐configured U*[c_e]A dimer 17 forms linear duplexes, and the U*[c_e]A⁽*⁾ allyl alcohols 6, 8, 10 , and 12 form mixtures of linear and cyclic duplexes. The C(6/I)‐unsubstituted A*[c_e]U allyl alcohols 19 and 23 form linear duplexes, whereas the C(6/I)‐substituted A*[c_e]U* allyl alcohols 21 and 25 , and the C(5′/I)‐deoxy A*[c_e]U⁽*⁾ dimers 27 and 29 also form minor amounts of cyclic duplexes. The influence of intra‐ and intermolecular H‐bonding of the allyl alcohols and the influence of the base sequence upon the formation of cyclic duplexes are discussed.     

Oligonucleotides Containing Pyrazolo[3,4-d]pyrimidines: The Influence of 7-Substituted 8-Aza-7-deaza-2′-deoxyguanosines on the Duplex Structure and Stability

Oligonucleotides containing 7-substituted 8-aza-7-deazaguanines (=6-amino-1,5-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-ones) were prepared by automated solid-phase synthesis. A series of 7-alkynylated 8-aza-7-deaza-2′-deoxyguanosines (see 4a – d ) were synthesized with the 7-iodonucleoside 3c as starting material and by the Pd⁰/Cu^I-catalyzed cross-coupling reaction with various alkynes. Phosphoramidites were prepared from the 7-substituted 8-aza-7-deaza-2′-deoxyguanosine derivatives carrying halogeno, cyano, and hexynyl substituents. From the melting profiles of oligonucleotide duplexes, the T_m values as well as the thermodynamic data were determined. A significant duplex stabilization by the 7-substituents was observed for the DNA⋅DNA duplexes, but not in the case of DNA⋅RNA hybrids.     

Formation and Stability of Gaseous WS2Cl2, WS2Br2 and WS2I2 – A Combined Experimental and Theoretical Study

Gaseous WS₂Cl₂ and WS₂Br₂ are formed by the reaction of solid WS₂ with chlorine resp. bromine at temperatures of about 1000 K. This could be shown by mass spectrometric measurements. The heats of formation and entropies of WS₂Cl₂ and WS₂Br₂ have been determined by means of mass spectrometry (MS) and quantum chemical calculations (QC). WS₂I₂ could not be detected by experimental methods. This is in line with the quantum chemically determined equilibrium constant of the formation reaction. The following values are given:, Δ_fH⁰₂₉₈(WS₂Cl₂) = –230.8 kJ · mol^–1 (MS), Δ_fH⁰₂₉₈(WS₂Cl₂) = –235.0 kJ · mol^–1 (QC),, S⁰₂₉₈(WS₂Cl₂) = 370.7 J · K^–1 · mol^–1 (QC) and, c_p⁰_T(WS₂Cl₂) = 103.78 + 7.07 × 10^–3 T – 0.93 × 10⁵ T^–2 – 3.25 × 10^–6 T² (298.15 K < T < 1000 K) (QC). Δ_fH⁰₂₉₈(WS₂Br₂) = –141.9 kJ · mol^–1 (MS), Δ_fH⁰₂₉₈(WS₂Br₂) = –131.5 kJ · mol^–1 (QC),, S⁰₂₉₈(WS₂Br₂) = 393.9 J · K^–1 · mol^–1 (QC) and, c_p⁰_T(WS₂Br₂) = 104.84 + 5.32 × 10^–3 T – 0.75 × 10⁵ T^–2 – 2.45 × 10^–6 T² (298.15 K < T < 1000 K) (QC). Δ_fH⁰₂₉₈(WS₂I₂) = –18.0 kJ · mol^–1 (QC), S⁰₂₉₈(WS₂I₂) = 409.9 J · K^–1 · mol^–1 (QC) and, c_p⁰_T(WS₂I₂) = 105.17 + 4.77 × 10^–3 T – 0.67 × 10⁵ T^–2 – 2.19 × 10^–6 T² (298.15 K < T < 1000 K) (QC). These molecules have the expected C_2v‐symmetry.     

Crystal structure,thermal properties and detonation characterization of bis(5‐amino‐1,2,4‐triazol‐4‐ium‐3‐yl)methane dichloride

Bis(5‐amino‐1,2,4‐triazol‐4‐ium‐3‐yl)methane dichloride (BATZM·Cl₂ or C₅H₁₀N₈²⁺·2Cl^?) was synthesized and crystallized, and the crystal structure was characterized by single‐crystal X‐ray diffraction; it belongs to the space group C2/c (monoclinic) with Z = 4. The structure of BATZM·Cl₂ can be described as a V‐shaped molecule with reasonable chemical geometry and no disorder, and its one‐dimensional structure can be described as a rhombic helix. The specific molar heat capacity (C_p,m) of BATZM·Cl₂ was determined using the continuous C_p mode of a microcalorimeter and theoretical calculations, and the C_p,m value is 276.18 J K^?1 mol^?1 at 298.15 K. The relative deviations between the theoretical and experimental values of C_p,m, H_T – H_298.15K and S_T – S_298.15K of BATZM·Cl₂ are almost equivalent at each temperature. The detonation velocity (D) and detonation pressure (P) of BATZM·Cl₂ were estimated using the nitrogen equivalent equation according to the experimental density; BATZM·Cl₂ has a higher detonation velocity (7143.60 ± 3.66 m s^?1) and detonation pressure (21.49 ± 0.03 GPa) than TNT. The above results for BATZM·Cl₂ are compared with those of bis(5‐amino‐1,2,4‐triazol‐3‐yl)methane (BATZM) and the effect of salt formation on them is discussed.     

Synthesis,Structure, and Magnetic Properties of a Series of Dinuclear Lanthanide Complexes Assembled by Acetate and a Schiff Base Ligand

Five dinuclear lanthanide complexes [Ln₂L₂(NO₃)₂(OAc)₄] · 2CH₃CN [Ln = Gd ( 1 ), Tb ( 2 ), Dy ( 3 ), Ho ( 4 ), and Er ( 5 )] [L = 2‐((2‐pyridinylmethylene)hydrazine)ethanol] were synthesized from the reactions of Ln(NO₃)₃ · 6H₂O with L and CH₃COOH in the presence of triethylamine. Their crystal structures were determined. They show similar dinuclear cores with the two lanthanide ions bridged by four acetate ligands in the μ₂‐η¹:η² and μ₂‐η¹:η¹ bridging modes. Each Ln^III ion in complexes 1 – 5 is further chelated by one L ligand and one nitrate ion, leading to the formation of a nine‐coordinated mono‐capped square antiprism arrangement. The dinuclear molecules in 1 – 5 are consolidated by hydrogen bonds and π ··· π stacking interactions to build a two‐dimensional sheet. Their magnetic properties were investigated. It revealed antiferromagnetic interactions between the Gd^III ions in 1 and ferromagnetic interactions between the Tb^III ions in 2 . The profiles of χ_mT vs. T curves of 3 – 5 reveal that the magnetic properties of 3 – 5 are probably dominated by the thermal depopulation of the Stark sublevels of Ln^III ions.     

Analysis of the unimolecular reaction N2O5 + M ⇌ NO2 + NO3 + M

Recent experimental results on the thermal decomposition of N₂O₅ in N₂ are evaluated in terms of unimolecular rate theory. A theoretically consistent set of fall-off curves is constructed which allows to identify experimental errors or misinterpretations. Limiting rate constants k₀ = [N₂] 2.2 × 10^?3 (T/300)^?4.4 exp(?11,080/T) cm³/molec·s over the range of 220–300 K, k_∞ = 9.7 × 10¹⁴ (T/300)^+0.1 exp(?11,080/T) s^?1 over the range of 220–300 K, and broadening factors of the fall-off curve F_cent = exp(-T/250) + exp(?1050/T) over the range of 220–520 K have been derived. NO₂ + NO₃ recombination rate constants over the range of 200–300 K are k_rec,0 = [N₂] 3.7 × 10^?30 (T/300)^?4.1 cm⁶/molec²·s and k_rec,∞ = 1.6 × 10^?12 (T/300)^+0.2 cm³/molec·s.     

Copper(II) Halide Complexes of 2-Aminopyrimidines: Crystal Structures of [(2-aminopyrimidine) n CuCl2] (n=1,2) and (2-amino-5-bromopyrimidine)2CuBr2

The reaction of CuX₂(X=Cl, Br) with 2-aminopyrimidine in aqueous solution, or 2-amino-5-bromopyrimidine in aqueous acid yields compounds of the forms [LCuCl₂] _n (1), [L₂CuCl₂] (2) and [L'₂CuBr₂] (3) [L=2-aminopyrimidine; L'=2-amino-5-bromo-pyrimidine]. The three compounds all form layered structures in which each copper ion is coordinated to two 2-aminopyrimidine molecules and two halide ions. Common structural threads involve bridging ligation [either by monomeric (1) or hydrogen bonded ligand dimers (2 and 3)], N-H···X and N-H···N hydrogen bonding and π-π stacking interactions as well as semi-coordinate Cu···X bond formation (1 and 2) or Br···Br interactions (3). Compounds 1 and 2 crystallize as two-dimensional coordination polymers with asymmetrically bihalide bridged (CuX₂) _n chains cross-linked into sheets by the 2-aminopyrimidine molecules (1) or by hydrogen bonded L₂ dimers (2). The halide bibridged chains expand their primary copper coordination spheres to give 4 + 2 coordination spheres in 1 and 2. In 3, the layer structure involves coordination of the hydrogen bonded L'₂ dimers and C-Br···Br- interactions. Crystal data: (1): monoclinic, P2₁/m, a=3.929(1), b=12.373(2), c=7.050(1)å, β=91.206(4)°, V=342.7(1)&Aringsup3;, Z=2, D _calc= 2.225Mg/m³, μ=3.878 mm^-1, R=0.0269 for [|I|≥3σ(I)]. For (2): triclinic, P-1, a=4.095(4), b=7.309(5), c=10.123(6) å, α=86.28(6), β=78.44(6), γ=74.55(8)°, V=286.1(4) ų, Z=1, D _calc=1.884 Mg/m³, μ=2.360 mm^-1, R=0.0506 for [|I|≥2σ(I)]. For (3): triclinic, P-1, a=6.074(4), b=7.673(3), c=8.887(3) å, α=108.43(3) β=100.86(5), γ=106.96(4)°, V=357.0(3) ų, Z=1, D _calc=2.657 Mg/m³, μ=12.714mm^-1, R=0.0409 for [|I|≥2σ(I)].     

4-硝基苯甲醇的低温热容和标准摩尔生成焓

用精密自动绝热量热计测定了4-硝基苯甲醇（4-NBA）在78 ~ 396 K温区的摩尔热容。其熔化温度、摩尔熔化焓及摩尔熔化熵分别为:(336.426 ± 0.088) K, (20.97 ± 0.13) kJ×mol-1 和 (57.24 ± 0.36) J×K-1×mol-1.根据热力学函数关系式,从热容值计算出了该物质在80 ~ 400 K温区的热力学函数值 [HT - H298.15 K] 和[ST - S298.15 K]. 用精密氧弹燃烧量热计测定了该物质在T＝298.15 K的恒容燃烧能和标准摩尔燃烧焓分别为 (C7H7NO3, s)＝- ( 3549.11 ± 1.47 ) kJ×mol-1 和 (C7H7NO3, s)＝- ( 3548.49 ± 1.47 ) kJ×mol-1. 利用标准摩尔燃烧焓和其他辅助热力学数据通过盖斯热化学循环, 计算出了该物质标准摩尔生成焓 (C7H7NO3, s)＝- (206.49 ± 2.52) kJ×mol-1 .     

Oligonucleotides Containing 7‐Deaza‐2′‐deoxyinosine as Universal Nucleoside: Synthesis of 7‐Halogenated and 7‐Alkynylated Derivatives,Ambiguous Base Pairing,and Dye Functionalization by the Alkyne–Azide ‘Click’ Reaction

Oligonucleotides containing 7‐deaza‐2′‐deoxyinosine derivatives bearing 7‐halogen substituents or 7‐alkynyl groups were prepared. For this, the phosphoramidites 2b – 2g containing 7‐substituted 7‐deaza‐2′‐deoxyinosine analogues 1b – 1g were synthesized (Scheme 2). Hybridization experiments with modified oligonucleotides demonstrate that all 2′‐deoxyinosine derivatives show ambiguous base pairing, as 2′‐deoxyinosine does. The duplex stability decreases in the order C_d>A_d>T_d>G_d when 2b – 2g pair with these canonical nucleosides (Table 6). The self‐complementary duplexes 5′‐d(F⁷c⁷I‐C)₆, d(Br⁷c⁷I‐C)₆, and d(I⁷c⁷I‐C)₆ are more stable than the parent duplex d(c⁷I‐C)₆ (Table 7). An oligonucleotide containing the octa‐1,7‐diyn‐1‐yl derivative 1g , i.e., 27 , was functionalized with the nonfluorescent 3‐azido‐7‐hydroxycoumarin ( 28 ) by the Huisgen–Sharpless–Meldal cycloaddition ‘click’ reaction to afford the highly fluorescent oligonucleotide conjugate 29 (Scheme 3). Consequently, oligonucleotides incorporating the derivative 1g bearing a terminal C?C bond show a number of favorable properties: i) it is possible to activate them by labeling with reporter molecules employing the ‘click’ chemistry. ii) Space demanding residues introduced in the 7‐position of the 7‐deazapurine base does not interfere with duplex structure and stability (Table 8). iii) The ambiguous pairing character of the nucleobase makes them universal probes for numerous applications in oligonucleotide chemistry, molecular biology, and nanobiotechnology.     

Der strukturdirigierende Einfluß von α, ω-Alkandiammoniumionen auf die Bildung von Cyanocupraten(I)

The Structure-directing Influence of α, ω-Alkanediammonium Ions on the Formation of Cyanocuprates(I) The alkane-1, n-diammonium-hexacyanotetracuprates(I) (n = 2 - 4) [NH₃(CH₂)₂NH₃][Cu₄(CN)₆]·2H₂O ( 1 ), [NH₃(CH₂)₃NH₃][Cu₄(CN)₆]·H₂O ( 2 ) and [NH₃(CH₂)₄NH₃][Cu₄(CN)₆]·2H₂O ( 3 ) and the pentane-1, 5-diammonium-tetradecacyanooctacuprate(I) [NH₃(CH₂)₅NH₃]₃[Cu₈(CN)₁₄]·3H₂O ( 4 ) were obtained by hydrothermal reaction of ethane-1, 2-diamine, propane-1, 3-diamine, butane-1, 4-diamine and pentane-1, 5-diamine with CuCN, NaCN and formic acid. In the crystal structures of compounds 1 - 3 anionic layers of connected (CuCN)₆-rings which vary in conformation are piled up containing rigid all-anti α, ω-alkanediammonium ions as spacers. The dications and water molecules are linked to chains by hydrogen bridges, penetrating the anionic layers in a needle-like fashion. In contrast the deformable dications [NH₃(CH₂)₅NH₃]²⁺ in 4 are integrated in cavities of a three-dimensional cyanocuprate(I). Crystal structure data: 1 , monoclinic, P2₁/c, a = 6.982(3) Å, b = 8.579(4) Å, c = 13.054(6) Å, β = 92.806(10)°, V = 780.9(6) ų, Z = 2, d_c = 2.145 gcm^-1, R₁ = 0.094; 2 , orthorhombic, C222₁, a = 8.715(2) Å, b = 14.764(3) Å, c = 12.411(2) Å, V = 1596.7(5) ų, Z = 4, d_c = 2.098 gcm^-1, R₁ = 0.026; 3 , orthorhombic, Pnn2, a = 7.276(2) Å, b = 8.612(2) Å, c = 14.731(3) Å, V = 923.1(3) ų, Z = 2, d_c = 1.916 gcm^-1, R₁ = 0.036; 4 , triclinic, P1, a = 8.113(5) Å, b = 11.068(5) Å, c = 13.689(5) Å, α = 91.270(5)°, β = 99.718(5)°, γ = 103.994(5)°, V = 1173.1(10) ų, Z = 1, d_c = 1.746 gcm^-1, R₁ = 0.057.     

Syntheses and structural determination of binuclear nine-coordinate (NH4)4[SmIII2(Httha)2]·16H2O and 2-D ladder-like binuclear nine-coordinate (NH4)4[SmIII2(dtpa)2]·10H2O

Two rare-earth metal coordination compounds, (NH₄)₄[Sm^III₂(Httha)₂]·16H₂O (1) (H₆ttha?=?triethylenetetramine-N,N,N′,N′′,N′′′,N′′′-hexaacetic acid) and (NH₄)₄[Sm^III₂(dtpa)₂]·10H₂O (2) (H₅dtpa?=?diethylenetriamine-N,N,N′,N′′,N′′-pentaacetic acid), have been synthesized through reflux and characterized by FT-IR spectroscopy, thermal analysis, and single-crystal X-ray diffraction techniques. Sm^III of (NH₄)₄[Sm^III₂(Httha)₂]·16H₂O (1) is nine-coordinate, forming tricapped trigonal prismatic coordination with three amine nitrogens and six oxygens, in which four oxygens are from one ttha and two from the other ttha. (NH₄)₄[Sm^III₂(Httha)₂]·16H₂O (1) crystallizes in the monoclinic crystal system with P2(1)/c space group. The crystal data are: a?=?13.9340(13) Å, b?=?22.890(3) Å, c?=?20.708(2) (14) Å, β?=?99.521(2)°, and V?=?6513.7(13) ų. There are two –NH⁺– groups in the [Sm^III₂(Httha)₂]^4?. The polymeric (NH₄)₄[Sm^III₂(dtpa)₂]·10H₂O (2) also is nine-coordinate with tricapped trigonal prismatic conformation and crystallizes in the triclinic crystal system with P–1 space group. The cell dimensions are: a?=?9.8240(8) Å, b?=?10.0329(9) Å, c?=?13.0941(11) Å, β?=?77.1640(10)°, and V?=?1227.30(18) ų. In (NH₄)₄[Sm^III₂(dtpa)₂]·10H₂O, there are two types of ammonium cations, which connect [Sm^III₂(dtpa)₂]^4? and lattice water through hydrogen bonds, leading to a 2-D ladder-like layer structure.