Collisional cooling rates of infrared excited ions are measured in a quadrupole ion trap (QIT) mass spectrometer at different combinations of temperature and pressure. Measurements are carried out by monitoring fragmentation efficiency of leucine enkephalin as a function of irradiation time by an infrared laser after a short excitation and incrementally increasing cooling periods. Cooling rates are observed to be directly related to bath gas pressure and inversely related to bath gas temperature. The cooling rate at typical ion trap operating pressure (1 mTorr) and temperature (room T) is faster than can be measured. At elevated temperature and the lowest pressure used for the studies, the rate of collisional cooling becomes negligible compared to the rate of radiative cooling. 相似文献
The fragmentation patterns obtained by ultraviolet photodissociation (UVPD) and collision-induced dissociation (CID) in a
quadrupole ion trap mass spectrometer were compared for peptides modified at their C-termini and at acidic amino acids. Attachment
of Alexa Fluor 350 or 7-amino-4-methyl-coumarin chromophores at the C-terminal and acidic residues enhances the UV absorptivity
of the peptides and all fragment ions that retain the chromophore, such as the y ions that contain the chromophore-modified
C-terminus. Whereas CID results in the formation of the typical array of mainly y-type and a/b-type fragment ions, UVPD produces
predominantly a/b-type ions with greatly reduced abundances of y ions. Immonium ions, mostly ones from aromatic or basic amino
acids, are also observed in the low m/z range upon UVPD. UVPD of peptides containing two chromophore moieties (with one at the C-terminus and another at an acidic
residue) results in even more efficient photodissociation at the expense of the annihilation of almost all diagnostic b and
y ions containing the chromophore. 相似文献
Infrared multiphoton photodissociation (IRMPD) in a quadrupole ion trap is not selective for a parent ion. Product ions are
decreased in abundance by continuous sequential dissociation and may be lost below the low mass cut-off. The IRMPD process
is made selective by resonantly exciting trapped ions into an axially offset laser path. Product ions form and collisionally
relax out of the laser path to accumulate in the center of the trap. The technique, termed selective broadband (SB) IRMPD,
limits sequential dissociation to preserve first generation product ion abundance. The abundances of larger product ions are
maximized by completely dissociating the parent ion, but continuous sequential dissociation does not form small product ions
below the low mass cut-off associated with conventional IRMPD. Smaller product ions are further increased in abundance in
another tandem mass spectrum by performing sequential stages of SB-IRMPD, adjusting the trapping rf amplitude to dissociate
larger product ions at the same qz range. Thermal assistance is used to perform SB-IRMPD at higher bath gas pressures for increased sensitivity. 相似文献
There is a continuous quest to enhance the limits of detection in ICP-MS for geoanalysis and geochemistry. Recently, a high transmission ICP-MS interface (S-mode) was designed to facilitate direct microanalysis of solids using a UV laser microprobe. 相似文献
A new, variable-temperature mass spectrometer system is described. By applying polyimide heating tape to the end-cap electrodes of a Bruker (Bremen, Germany) Esquire ion trap, it is possible to vary the effective temperature of the system between 40 and 100°C. The modification does not impact the operation of the ion trap and the heater can be used for extended periods without degradation of the system. The accuracy of the ion trap temperatures was assessed by examining two gas-phase equilibrium processes with known thermochemistry. In each case, the variable-temperature ion trap provided data that were in good accord with literature data, indicating the effective temperature in the ion trap environment was being successfully modulated by the changes in the set-point temperatures on the end-cap electrodes. The new design offers a convenient and effective way to convert commercial ion trap mass spectrometers into variable-temperature instruments.
Laser-induced fluorescence is used to visualize populations of gaseous ions stored in a quadrupole ion trap (QIT) mass spectrometer. Presented images include the first fluorescence image of molecular ions collected under conditions typically used in mass spectrometry experiments. Under these “normal” mass spectrometry conditions, the radial (r) and axial (z) full-width at half maxima (FWHM) of the detected ion cloud are 615 and 214 μm, respectively, corresponding to ~6 % of r0 and ~3 % of z0 for the QIT used. The effects on the shape and size of the ion cloud caused by varying the pressure of helium bath gas, the number of trapped ions, and the Mathieu parameter qz are visualized and discussed. When a “tickle voltage” is applied to the exit end-cap electrode, as is done in collisionally activated dissociation, a significant elongation in the axial, but not the radial, dimension of the ion cloud is apparent. Finally, using spectroscopically distinguishable fluorophores of two different m/z values, images are presented that illustrate stratification of the ion cloud; ions of lower m/z (higher qz) are located in the center of the trapping region, effectively excluding higher m/z (lower qz) ions, which form a surrounding layer. Fluorescence images such as those presented here provide a useful reference for better understanding the collective behavior of ions in radio frequency (rf) trapping devices and how phenomena such as collisions and space-charge affect ion distribution.
A theoretical method was proposed in this work to study space charge effects in quadrupole ion traps, including ion trapping, ion motion frequency shift, and nonlinear effects on ion trajectories. The spatial distributions of ion clouds within quadrupole ion traps were first modeled for both 3D and linear ion traps. It is found that the electric field generated by space charge can be expressed as a summation of even-order fields, such as quadrupole field, octopole field, etc. Ion trajectories were then solved using the harmonic balance method. Similar to high-order field effects, space charge will result in an “ocean wave” shape nonlinear resonance curve for an ion under a dipolar excitation. However, the nonlinear resonance curve will be totally shifted to lower frequencies and bend towards ion secular frequency as ion motion amplitude increases, which is just the opposite effect of any even-order field. Based on theoretical derivations, methods to reduce space charge effects were proposed.
A new technique has been developed which allows the direct measurement of frequencies of ions trapped in a quadrupole ion trap mass spectrometer. This pump/probe method employs a fast direct current (DC) pulse (pump) to displace a kinetically cooled ion population from the center of the trap, and a laser (probe) which recognizes when ions reappear at the center of the trap by the formation of photodissociation fragments. The translationally excited ions undergo periodic motion within the confines of the ion trap, and this periodic motion can be followed by recording the intensity of the photodissociation fragment as a function of the delay time between the DC pump and the laser probe. The DC pulse has a rise time of 15 ns; data are taken 1 ms after its application to allow stable ion motion to be sampled. Sampling of the ion cloud is done at 50 ns intervals, and fast Fourier transformation of the time-based data yields the ion frequencies and their relative magnitudes. Data are reported for ions derived from acetophenone (m/z 105) and 1,4-cyclohexadiene (m/z 80) under various trapping conditions corresponding to different Mathieu qz values. The measured fundamental secular frequencies, fz and fr, are found to agree well with those predicted. The presence of higher order multipole contributions to the trapping field is evident from such ion frequencies as the drive frequency, fRF,. The ability to measure ion frequencies under operating conditions provides a new tool for comparing simulated and experimental data. Simulation data from the program ITSIM, modified to account for the effects of collisions, are shown to predict the major frequency components observed in the experimental data. 相似文献
A method of fragmenting ions over a wide range of m/z values while balancing energy deposition into the precursor ion and available product ion mass range is demonstrated. In the method, which we refer to as “multigenerational collision-induced dissociation”, the radiofrequency (rf) amplitude is first increased to bring the lowest m/z of the precursor ion of interest to just below the boundary of the Mathieu stability diagram (q = 0.908). A supplementary AC signal at a fixed Mathieu q in the range 0.2–0.35 (chosen to balance precursor ion potential well depth with available product ion mass range) is then used for ion excitation as the rf amplitude is scanned downward, thus fragmenting the precursor ion population from high to low m/z. The method is shown to generate high intensities of product ions compared with other broadband CID methods while retaining low mass ions during the fragmentation step, resulting in extensive fragment ion coverage for various components of complex mixtures. Because ions are fragmented from high to low m/z, space charge effects are minimized and multiple discrete generations of product ions are produced, thereby giving rise to “multigenerational” product ion mass spectra.
Examination of the collisional cooling effect of the buffer gases on ion trapping and detection in an ion trap mass spectrometer has been undertaken by the SIMION 3D program. Computation for the kinetic energy of ions under various conditions was used to account for the effects of collisional cooling of ions. Several parameters that may affect the collisional cooling effects of ions are evaluated including the existence and the variation of pressure of the buffer gas; the temperature of the ion trap; the size of the inner radius of the ion trap electrodes; the mass to charge ratio of ions; the alternative buffer gases and the qz. values which establish the ion trap trapping environment. 相似文献
Hydrogen/deuterium exchange (HDX) mass spectrometry (MS) for protein structural analysis has been adopted for many purposes, including biopharmaceutical development. One of the benefits of examining amide proton exchange by mass spectrometry is that it can readily resolve different exchange regimes, as evidenced by either binomial or bimodal isotope patterns. By careful analysis of the isotope pattern during exchange, more insight can be obtained on protein behavior in solution. However, one must be sure that any observed bimodal isotope patterns are not artifacts of analysis and are reflective of the true behavior in solution. Sample carryover and certain stationary phases are known as potential sources of bimodal artifacts. Here, we describe an additional undocumented source of deuterium loss resulting in artificial bimodal patterns for certain highly charged peptides. We demonstrate that this phenomenon is predominantly due to gas-phase proton exchange between peptides and bulk solvent within the initial stages of high-transmission conjoined ion guides. Minor adjustments of the ion guide settings, as reported here, eliminate the phenomenon without sacrificing signal intensity. Such gas-phase deuterium loss should be appreciated for all HDX-MS studies using such ion optics, even for routine studies not focused on interpreting bimodal spectra.
The extent of internal energy deposition into ions upon storage, radial ejection, and detection using a linear quadrupole ion trap mass spectrometer is investigated as a function of ion size (m/z 59 to 810) using seven ion-molecule thermometer reactions that have well characterized reaction entropies and enthalpies. The average effective temperatures of the reactants and products of the ion-molecule reactions, which were obtained from ion-molecule equilibrium measurements, range from 295 to 350 K and do not depend significantly on the number of trapped ions, m/z value, ion trap qz value, reaction enthalpy/entropy, or the number of vibrational degrees of freedom for the seven reactions investigated. The average of the effective temperature values obtained for all seven thermometer reactions is 318?±?23 K, which indicates that linear quadrupole ion trap mass spectrometers can be used to study the structure(s) and reactivity of ions at near ambient temperature.
Means to allow for the application of a dipolar DC pulse to the end-cap electrodes of a three-dimensional (3-D) quadrupole
ion trap for as short as a millisecond to as long as hundreds of milliseconds are described. The implementation of dipolar
DC does not compromise the ability to apply AC waveforms to the end-cap electrodes at other times in the experiment. Dipolar
DC provides a nonresonant means for ion acceleration by displacing ions from the center of the ion trap where they experience
stronger rf electric fields, which increases the extent of micro-motion. The evolution of the product ion spectrum to higher
generation products with time, as shown using protonated leucine enkephalin as a model protonated peptide, illustrates the
broad-band nature of the activation. Dipolar DC activation is also shown to be effective as an ion heating approach in mimicking
high amplitude short time excitation (HASTE)/pulsed Q dissociation (PQD) resonance excitation experiments that are intended
to enhance the likelihood for observing low m/z products in ion trap tandem mass spectrometry. 相似文献
UV–vis photodissociation action spectroscopy is becoming increasingly prevalent because of advances in, and commercial availability of, ion trapping technologies and tunable laser sources. This study outlines in detail an instrumental arrangement, combining a commercial ion-trap mass spectrometer and tunable nanosecond pulsed laser source, for performing fully automated photodissociation action spectroscopy on gas-phase ions. The components of the instrumentation are outlined, including the optical and electronic interfacing, in addition to the control software for automating the experiment and performing online analysis of the spectra. To demonstrate the utility of this ensemble, the photodissociation action spectra of 4-chloroanilinium, 4-bromoanilinium, and 4-iodoanilinium cations are presented and discussed. Multiple photoproducts are detected in each case and the photoproduct yields are followed as a function of laser wavelength. It is shown that the wavelength-dependent partitioning of the halide loss, H loss, and NH3 loss channels can be broadly rationalized in terms of the relative carbon-halide bond dissociation energies and processes of energy redistribution. The photodissociation action spectrum of (phenyl)Ag2+ is compared with a literature spectrum as a further benchmark.
Using the strategy of template polymerization, a presynthesized specific metal‐complexing polymer (poly(methacryloylhistidine‐Ni(II)‐CN?), Ni‐CN/IP) has been specifically used to recognize cyanide ion. As described previously, nickel(II)‐methacryloylhistidine dihydrate complex monomer was synthesized and reacted with KCN to produce the monomer‐template complex. This monomer‐template complex phase was polymerized in a dispersion medium. After polymerization, the template (CN?) was removed from the Ni‐CN/IP, producing CN? ion imprinted metal‐chelate polymer. The synthesized ion imprinted polymer is examined as a novel potential cyanide selective ionophore in polymeric membrane type ion selective electrodes. Membranes formulated with Ni‐CN/IP are shown to exhibit enhanced potentiometric selectivity for cyanide over more lipophilic anions including perchlorate, iodide, and thiocyanate. Addition of lipophilic cationic sites into the organic membranes enhanced the response and selectivity towards CN? ion, while addition of lipophilic anionic sites deteriorated the response but enhanced the selectivity, indicating that the Ni‐CN/IP particles behaves via the so‐called “mixed‐mode” response mechanism. The fabricated sensors possessed good performance characteristics, in terms of life span, selectivity for CN? ion over a wide range of other interfering anions, fast response, stability and high reproducibility. Applications for direct determination of cyanide ion in hazardous wastes using the proposed sensors showed good correlation with data obtained using commercial solid state cyanide electrode, with no significant difference in the t‐test values with 95 % confidence level. An F‐test revealed that the standard deviations of the replicate sample measurements obtained by the two methods were not significantly different. 相似文献
Boundary-Activated Dissociation (BAD) of multiple charge ions has been investigated in a low pressure linear ion trap (LIT) in the presence of nonlinear DC fields. Nonlinear DC fields allowed ions to be stored for a long duration at working points beyond the βy?=?0 stability boundary of the regular quadrupole fields. The ions reached large stable radial amplitude trajectories gaining high kinetic energies from the drive RF field. This led to collision activation and the formation of fragments. Experimental and simulation data showed that the degree of fragmentation was strongly dependent on the q value, Mathieu stability parameter, and the strengths of nonlinear fields. In the absence of the nonlinear fields the fragmentation efficiency was 0?% at q?=?0.23 and 17?% at q?=?0.4. In the presence of nonlinear fields BAD efficiency increased to up to 94?% at q?=?0.23 and 84?% at q?=?0.4. The broadening of the stability diagram at the βy?=?0 boundary also enabled the observation of fragment ions with higher mass-to-charge ratios (m/z) than the m/z of the precursor ions thus overcoming a major drawback of BAD of multiple-charged ions. 相似文献
Radiofrequency (rf) multipole ion guides are widely used to transfer ions through the strong magnetic field gradient between
source and analyzer regions of external source Fourier transform ion cyclotron resonance mass spectrometers. Although ion
transfer as determined solely by the electric field in a multipole ion guide has been thoroughly studied, transfer influenced
by immersion in a strong magnetic field gradient has not been as well characterized. Recent work has indicated that the added
magnetic field can have profound effects on ion transfer, ultimately resulting in loss of ions initially contained within
the multipole. Those losses result from radial ejection of ions due to transient cyclotron resonance that occurs when ions
traverse a region in which the magnetic field results in an effective cyclotron frequency equal to the multipole rf drive
frequency divided by the multipole order (multipole order is equal to one-half the number of poles). In this work, we describe
the analytical basis for ion resonance in a rf multipole ion guide with superposed static magnetic field and compare with
results of numerical trajectory simulations. 相似文献
We provide modeling and experimental data describing the dominant ion-loss mechanisms for differential mobility spectrometry (DMS). Ion motion is considered from the inlet region of the mobility analyzer to the DMS exit, and losses resulting from diffusion to electrode surfaces, insufficient effective gap, ion fragmentation, and fringing field effects are considered for a commercial DMS system with 1-mm gap height. It is shown that losses due to diffusion and radial oscillations can be minimized with careful consideration of residence time, electrode spacing, gas flow rate, and waveform frequency. Fragmentation effects can be minimized by limitation of the separation field. When these parameters were optimized, fringing field effects at the DMS inlet contributed the most to signal reduction. We also describe a new DMS cell configuration that improves the gas dynamics at the mobility cell inlet. The new cell provides a gas jet that decreases the residence time for ions within the fringing field region, resulting in at least twofold increase in ion signal as determined by experimental data and simulations.
