A new method for the detection of racemization during peptide synthesis: stereoselective hydrolysis of diastereomeric peptides by leucine aminopeptidase

A suitably protected dipeptide of configuration L -D , e.g. Z-L -Ala-D -Ala is coupled with an all L alanine peptide, e.g. L -Ala-L -Ala-ONb

1 Abbreviations according to the IUPAC-IUB rules, ‘Symbols for Amino-Acid Derivatives and Peptides, Recommendations (1971)’'. see e.g. J. biol. Chemistry 247, 977 (1972). In particular the following abbreviations have been used: Z = benzyloxycarbonyl-, -ONb = p-nitrobenzyloxy-, -ONSu = succinimido-oxy-. Additional abbreviations are LAP = leucine aminopeptidase, DCCI = N,N′-dicyclohexylcarbodiimide, DMF = dimethylformamide.

. The blocking groups are removed and the free peptide hydrolyzed by leucine amino peptidase (E.C. 3.4.1.1). This enzyme shows absolute L -specificity for the penultimate peptide bond from the amino end and therefore cleaves only the all L peptide formed through racemization. The amount of free alanine determined by amino acid analysis gives a multiple of the degree of racemization. The sensitivity of the test allows 0.1% of (L -Ala)₄ to be detected in the synthesis of L -Ala-D -Ala-L -Ala-L Ala. Coupling of Z-L -Ala-D -Ala and Z-L -Ala-D -Phe with di- and trialanine peptides has been studied using DCCI and DCCI + 1-hydroxybenzotriazole as coupling reagents. The degree of racemization was around 80% for the coupling by DCCI in DMF but was reduced to 0.2–0.4% in the presence of 2 equivalents of 1-hydroxybenzotriazole. Coupling using the succinimide esters Z-L -Ala-D -Ala-ONSu and Z-L -Ala-D -Phe-ONSu resulted in 0.8 to 10% racemization, depending on the solvent and base used.     

The Effect of Electron-Donating and Electron-Withdrawing Substituents on 1H-and 13C-NMR chemical shifts of novel 7′-aryl-substituted 7′-apo-β-carotenes

The synthesis of 7′-aryl-7′-apo-β-carotenes, where aryl (Ar) is Ph, 4-NO₂C₆H₄, 4-MeOC₆H₄, 4-(MeO₂C)C₆H₄, C₆F₅, and 2,4,6-Me₃C₆H₂, is described. NMR Chemical shifts of all H- and C-atoms are presented, together with specific examples of the spectra. In contrast to ¹H chemical shifts which, except for H? C(8′) and H? C(7′), did not differ greatly from those of β,β-carotene, considerable variations in ¹³C chemical shifts were observed. Signals of the C(α) atoms of the polyene chain [C(β)? C(α)] +_n Ar were shielded, those of the C(β) atoms were deshielded, with some exceptions when n = 1; the effects decreased with increasing n.     

Protonenresonanz-Spektroskopie ungesättigter Ringsysteme—XVI 7,7-Difluor-benzo-cyclopropen

The NMR-spectrum of 7·7-difluoro-benzo-cyclopropene ( 2 ) has been analysed to obtain chemical shifts and spin, spin-coupling constants: δ_AA′ = 7·6026, δ_BB′ = 7·4834 ppm; J_AB = 6·86, J_AA′ = 7·45, J_AB′ = 0·34 and J_BB′ = 1·89 Hz. Heteronuclear double resonance experiments have been used to establish a positive sign for ⁴J(H? F) (3.64 Hz) and a negative sign for ⁵J(H? F) (?0·33 Hz) in this molecule. The results are discussed with reference to the structure of 2 and the NMR data found for benzo-cyclopropene.     

1H- und 13C-NMR-Untersuchungen zur Struktur N-substituierter Tetrazole—Die Strukturen des N-Methoxycarbonyl-, N-Acetyl- und N-(Tri-n-butylstannyl)-tetrazols sowie Substituenteneffekte auf δ13C und 1J(CH)

The ¹H and ¹³C NMR spectra of several isomeric N-substituted tetrazoles have been investigated. ¹³C NMR is shown to be more useful for distinguishing between structural isomers of N-substituted tetrazoles except for those carrying electropositive substituents like SnBu₃. Correlations of δC-5 (inverse) and ¹J(C-5,H) with s?₁ found for 1-substituted tetrazole allowed the identification of the N SnBu₃ derivative as 1-(tri-n-butylstannyl)tetrazole. The phenyl carbon chemical shift difference ΔC′ = δC-3′-δC-2′ is insignificant for structure elucidation and conformational studies of N-substituted 5-phenyltetrazoles; ΔH′ from ¹H NMR spectra seems to be more useful.     

Etude par Résonance Magnétique Nucléaire de dérivés phosphores. Etude de dithiaphospholanes-1,3,2

The proton NMR spectral analysis of eight different 1,3,2-dithiaphospholanes with various groups attached to the phosphorus atom has been performed. The AA′BB′X (X phosphorus atom) system shows that the two ³J(P? S? C? H) coupling constants have a small magnitude and opposite signs. Using the ³J(HH) values, the torsion about the C₄—C₅ bond has been evaluated. The conformational requirements in the two isomers of the 2 phenyl-4-methyl-1,3,2-dithiaphospholane are also discussed.     

187Os subspectra in 1H and 31P{1H} spectra of triosmium carbonyl clusters

A survey of the use of ¹⁸⁷Os satellite subspectra in ¹H and ³¹P{¹H} spectra of triosmium carbonyl clusters is reported. By varying evolution delays in HMQC spectra of [Os₃(µ‐H)₂(CO)₁₀] we have selectively extracted the values for ¹J(Os,H) and ²J(Os,H), respectively. An analysis of the principal modes of phosphine coordination in triosmium clusters demonstrates that ³¹P{¹H}¹⁸⁷Os satellite subspectra are diagnostic for equatorial coordination [¹J(Os,P) = 211–223 Hz] or for axial coordination (perpendicular to the plane of the cluster) [¹J(Os,P) ≈ 147 Hz]. Chelating and bridging diphosphines yield ¹⁸⁷Os satellite subspectra which are the sum of A₂X and AA′X spin systems. If significant P–P coupling is present, the AA′X component requires simulation. All observed ²J(Os,P) trans‐equatorial couplings fall in the range 38–65 Hz. Copyright © 2001 John Wiley & Sons, Ltd.     

Preferred spatial arrangement of the aromatic side chains in linear oligopeptides containing tyrosine.

¹H-NMR. studies of the protected linear tetrapeptides CF₃CO-Gly-Gly-L -Tyr-L -Ala-OCH₃, CF₃CO-Gly-L -Ala-L -Tyr-L -Ala-OCH₃ and CF₃CO-Gly-L -Ala-L -Tyr-Gly-OCH₃ showed that the side chain of the tyrosyl residue was in all three peptides preferentially oriented towards the amino terminus of the peptide chain. This preferred spatial arrangement of the aromatic side chain was manifested in the chemical shifts of the amino acid residue preceding tyrosine and in the vicinal spin-spin coupling constants ³J_HCαCβH of tyrosine.     

1H, 13C, 15N and 195Pt NMR studies of Au(III) and Pt(II) chloride organometallics with 2‐phenylpyridine

¹H, ¹³C, ¹⁵N and ¹⁹⁵Pt NMR studies of gold(III) and platinum(II) chloride organometallics with N(1),C(2′)‐chelated, deprotonated 2‐phenylpyridine (2ppy*) of the formulae [Au(2ppy*)Cl₂], trans(N,N)‐[Pt(2ppy*)(2ppy)Cl] and trans(S,N)‐[Pt(2ppy*)(DMSO‐d₆)Cl] (formed in situ upon dissolving [Pt(2ppy*)(µ‐Cl)]₂ in DMSO‐d₆) were performed. All signals were unambiguously assigned by HMBC/HSQC methods and the respective ¹H, ¹³C and ¹⁵N coordination shifts (i.e. differences between chemical shifts of the same atom in the complex and ligand molecules: Δ^1H_coord = δ^1H_complex ? δ^1H_ligand, Δ^13C_coord = δ^13C_complex ? δ^13C_ligand, Δ^15N_coord = δ^15N_complex ? δ^15N_ligand), as well as ¹⁹⁵Pt chemical shifts and ¹H‐¹⁹⁵Pt coupling constants discussed in relation to the known molecular structures. Characteristic deshielding of nitrogen‐adjacent H(6) protons and metallated C(2′) atoms as well as significant shielding of coordinated N(1) nitrogens is discussed in respect to a large set of literature NMR data available for related cyclometallated compounds. Copyright © 2009 John Wiley & Sons, Ltd.     

Die Konformativen Umwandlungen des Ungesättigten Siebenringes in 4.5.6-Trithia-1.2-Benzocycloheptenen-(1) Konformative Beweglichkeit Flexibler Ringsysteme—XVI. Untersuchungen mit Hilfe Der Protonenresonanzspektroskopie

The conformational equilibria and conversions of 4.5.6-trithia-1.2-benzocycloheptene-(1) ( 1 ) and the 3′.6′-dimethoxy-, 3′.6′-dimethyl- and 3′.6′-diphenyl- derivatives ( 2, 3 and 4 ) were investigated by NMR spectroscopy. Solutions of these substances are equilibrium mixtures of two conformers, one presumably having a chair form and the other a boat form. The free enthalpy of the boat conformer ΔG_B is dependent on the size of the substituents (R) in the 3′ and 6′ positions. The ΔG_B values for R = H, OCH₃, C₆H₅ and CH₃ are 1,03, 0,82, 0,50 and ?0,19 kcal/moles, respectively. By slow crystallization one conformer of the substituted trithiabenzocycloheptenes may be obtained in a pure crystalline form. The dimethoxy derivative crystallizes in the chair form, whereas the dimethyl and the diphenyl derivatives crystallize in the boat form. After dissolving the crystals, the conformational equilibrium is restored; at 0°C the half-lifes range from 2 to 15 minutes. By means of the temperature dependence of the NMR spectra two different types of conformational changes may be distinguished experimentally: the slower one is assigned to the inversion of the seven membered ring and the faster one to its pseudorotation. The free enthalpy of activation ΔG_v^≠ of the inversion was determined for 4.5.6-trithia-1.2-benzocycloheptene-(1) by the ‘line-shape’ method and for the diphenyl derivative by the ‘equilibration’ method. Both methods were applied to the other derivatives. The ΔG_v^≠ values obtained by the two different methods agree well with one another. The free enthalpy of activation of the inversion ΔG_v^≠ and of the pseudorotation ΔG_p^≠ both depend on the nature of the substituents. The ΔG_v^≠ values range from 17,9 to 20,5 kcal/mole and the ΔG_p^≠ values are equal to or lower than 11,4 kcal/mole.     

Configurational assignment in alkyl‐branched sugars via the geminal C,H coupling constants

The measurement of the magnitude and sign of ²J(C,H) couplings offers a reliable way to determine the absolute configuration at a carbon center in a fixed cyclic system. A decrease of the dihedral angle ? in the O—C_A—C_B—H fragment always leads to a change of the ²J(C_A,H_B) coupling to more negative values, independent of the type and position of substituents at the two carbon centers. The orientations of the two substituents at C‐3 of the epimeric pair 1 and 2 were determined unambiguously through the measurement of the geminal coupling constants between C‐3 and the hydrogen atoms at C‐2 and C‐4. In particular, ²J(C‐3,H‐2ax) with ?1.5 Hz, ? = 174° in 1 and ?6.6 Hz, ? = 47° in 2 , and ²J(C‐3,H‐4) with +1.5 Hz, ? = 175° in 1 and ?4.7 Hz, ? = 49° in 2 showed the greatest differences between the two epimers. Both couplings therefore allow the determination of the absolute configuration at C‐3. It should be noted, however, that the size of the coupling constants can be different for dihedral angles of nearly identical size, when there are different numbers of electronegative substituents on the two coupling pathways, i.e. no O‐substituent at C‐2, but one axial O‐substituent at C‐4. It becomes clear that it is not sufficient to measure the magnitude of ²J coupling constants only, but that the sign of the geminal coupling is needed to identify the absolute configuration at a chiral center. The coupling of C‐3 with H‐2eq is not useful for the determination of the configuration at C‐3, as the similarity of the dihedral angles ? (O—C‐3—C‐2—H‐2eq) (57° in 1 and 70° in 2 ) leads to identical coupling constants (?6.1 Hz) for both epimers. Copyright © 2003 John Wiley & Sons, Ltd.     

Fluoro(phenylsufinyl)methyllithium. Note on the 13C-NMR Spectrum of a Flourocarbenoid

The title compound is synthesized with ¹³C- and ⁶Li-labelling on the fluorinated carbon atom. H/Li-Exchange in fluoromethyl phenyl sulfoxide (1→2) causes a Δδ(¹³C) = + 11.4 ppm, a ΔJ(¹³C,¹H) ≈ 0 Hz, and a ΔJ(¹⁹F,¹³C) = + 80.4 Hz. Tentative conclusions bout the struture of the title compound are drawn from these changes.     

From As‐Zincoarsasilene (LZn‐As=SiL′) to Arsaethynolato (As≡C−O) and Arsaketenylido (O=C=As) Zinc Complexes

The reactivity of the As‐zincosilaarsene LZn?As=SiL′ A (L=[CH(CMeNDipp)₂]^?, Dipp=2,6‐ⁱPr₂C₆H₃, L′=[{C(H)N(2,6‐ⁱPr₂‐C₆H₃)}₂]^2?) towards small molecules was investigated. Due to the pronounced zwitterionic character of the Si=As bond of A , it undergoes addition reactions with H₂O and NH₃, forming LZnAs(H)SiOH(L′) 1 and LZnAs(H)SiNH₂(L′) 2 . Oxygenation of A with N₂O at ?60 °C furnishes the deep blue 1,2‐disiloxydiarsene, [LZnOSi(L′)As]₂ 4 , presumably via dimerization of the arsinidene intermediate LZnOSi(L′)As 3 . Oxygenation of A with CO₂ leads to the monomeric arsaethynolato siloxido zinc complex LZnOSi(L′)(OC≡As) 5 , essentially trapping the intermediary arsinidene 3 with liberated CO following initial oxidation of the Si=As bond. DFT calculations confirm the ambident coordination mode of the anionic [AsCO] ligand in solution, with the O‐arsaethynolato [As≡C?O]^.? in 5 , and the As‐arsaketenylido ligand mode [O=C=As]^? present in LZnO?Si(L′)(?As=C=O) 5′ akin to the analogous phosphorus system, [PCO]^?.     

Long range H,H coupling constants in cycloheptatrienes

The ¹H NMR spectra of 1,6-dicarbomethoxycyclohepta-1,3,5-triene ( 2 ) and 3,4-benzocyclohepta-1,3,5-triene ( 3 ) have been analysed in terms of chemical shifts and coupling constants. A method for the assignment of δ(AA′) and δ(BB′) in AA′BB′ systems, based on the observation of ¹³C satellites in the ¹H NMR spectrum, is described. For J(1,5) in 3 , a negative sign was established. Spin tickling experiments were used to determine the positive sign for J(2,5) in 2 and the negative sign for J(2,7) in 3. The conformation of 3 is discussed.     

Resonance in the rotational dependence of the isotope-selective reaction between IiCl(A 3Π1) and acetylene

The rotational dependence of the isotope selective reaction between IⁱCl(A ³Π_l, υ′, J′) and acetylene (C₂H₂, C₂D₂) forming the photoaddition product 1,2-iodo-chloro-ethyene was studied for ν′ = 19 and ν′ = 20. The enrichment factor in the photoproduct shows resonances for J′ = 32, ν′ = 19 and J′ = 6, υ′ = 20.     

Bestimmung der Struktur von Phenyläthinyllithium in Lösung mittels Tieftemperatur-NMR-Spektroskopie

The dimeric and tetrametic structures of complexes of phenylethinyllithium, as recently discovered by X-ray analysis in the solid state, were also found to be present in solution. Tetrahydrofuran solutions of 1-(⁶Li)-[1-¹³C]-2-phenylethyne in the presence or absence of N,N,N′,N′-tetramethylpolymethylenediamines show a pentuplett ¹³C-NMR signal [δ=140 ppm, J(C,Li)=8.2 Hz] from the labelled C-atom at low temperatures (?95 to ?110°). This proves the dimeric structure. When (⁶Li)BuLi is added, a mixed dimer [(C₆H₅C?CLi)(C₄H₉Li)] is formed [δ=142 ppm, J(C,Li) = 7.8 Hz]. This is converted to a mixed tetramer [(C₆H₅C?CLi)(C₄H₉Li)₃] upon addition of larger amounts of (⁶Li)BuLi, as concluded from a signal at δ = 133.5 ppm, J(C,Li) = 5.6 Hz. The multiplicity of this signal suggests that a static tetramer is present, in which the C-atoms couple only with three next Li-neighbors.     

The 7‐bromo derivative of 2‐amino‐2′‐deoxytubercidin fluorinated at the sugar moiety

The title compound, 2,4‐diamino‐5‐bromo‐7‐(2‐deoxy‐2‐fluoro‐β‐d ‐arabinofuranosyl)‐7H‐pyrrolo[2,3‐d]pyrimidine, C₁₁H₁₃BrFN₅O₃, shows two conformations of the exocyclic C4′—C5′ bond, with the torsion angle γ (O5′—C5′—C4′—C3′) being 170.1 (3)° for conformer 1 (occupancy 0.69) and 60.7 (7)° for conformer 2 (occupancy 0.31). The N‐glycosylic bond exhibits an anti conformation, with χ = −114.8 (4)°. The sugar pucker is N‐type (C3′‐endo; ³T₄), with P = 23.3 (4)° and τ_m = 36.5 (2)°. The compound forms a three‐dimensional network that is stabilized by several intermolecular hydrogen bonds (N—H...O, O—H...N and N—H...Br).     

Halogenomercury Salts of Sterically Crowded Triazenides – Convenient Starting Materials for Redox‐Transmetallation Reactions

Diaryl‐substituted triazenides Ar(Ar′)N₃HgX [Ar/Ar′ = Dmp/Mph, X = Cl ( 2a ), Br ( 3a ), I ( 4a ); Ar/Ar′ = Dmp/Tph, X = Cl ( 2b ), I ( 4b ) with Mph = 2‐MesC₆H₄, Mes = 2,4,6‐Me₃C₆H₂, Tph = 2′,4′,6′‐triisopropylbiphenyl‐2‐yl and Dmp = 2,6‐Mes₂C₆H₃] were synthesized by salt‐metathesis reactions in ethyl ether from the readily available starting materials Ar(Ar′)N₃Li and HgX₂. These compounds may be used for redox‐transmetallation reactions with rare‐earth or alkaline earth metals. Thus, reaction of 4b or 2b with magnesium or ytterbium in tetrahydrofuran afforded the triazenides Dmp(Tph)N₃MX(thf) ( 5b : M = Mg, X = I; 6b : M = Yb, X = Cl) in good yield. All new compounds were characterized by melting point, ¹H and ¹³C NMR spectroscopy and for selected species by IR spectroscopy or mass spectrometry. In addition, the solid‐state structures of triazenides 2a , 2b , 3a , 4b , 5b and 6b were investigated by single‐crystal X‐ray diffraction.     

C3(SINGLE BOND)Mα Bond contribution to polarizability tensor and 3J(C1Mα) NMR coupling constant in 1-X-3-M-bicyclo[1.1.1]pentanes

In the present work, the relationship between the large substituent effects on ³J(C₁H) in 1-X-3-M-bicyclo[1.1.1]pentanes, I , and the polarizability of the bridgehead C₃(SINGLE BOND)M_α bond is investigated. The existence of such a relationship is suggested by the finding that the effect of an electronegative substituent X on ³J(C₁M_α) couplings in I (M=H) is due to a distortion of the C₃(SINGLE BOND)H bond toward the C₁ center, which enhances the Fermi contact interaction. If such distortion originates in an electrostatic effect, then in other members of this series it can be expected that the substituent effects on ³J(C₁M_α) couplings should depend strongly on the C₃(SINGLE BOND)M_α bond polarizability. Two approaches are followed. First, the ab initio CLOPPA-IPPP method is applied to study the C₃(SINGLE BOND)M_α bond contribution to the molecular static polarizability tensor in I (M=H, F, CH₃). Such bond polarizabilities are found to follow the same trend as calculated as well as experimentally determined substituent effects on ³J(C₁M_α) couplings, which were measured as part of this work in I [X=H, Cl; M=F, CH₃ and X=OCH₃; M=Sn(CH₃)₃]. Second, ³J(C₁M_α) couplings (M=H, CH₃) are calculated at an ab initio level for X=H, F, and they are compared with those obtained in the parent compound (X=H) if the calculation is carried out in the presence of an inhomogeneous electric field. © 1998 John Wiley & Sons, Inc. J Comput Chem 19: 181–188, 1998     

Zur Reaktivität von Titanocenkomplexen [Ti(Cp′)2(η2‐Me3SiC≡CSiMe3)] (Cp′ = Cp,Cp*) gegenüber Benzoldicarbonsäuren

On the Reactivity of Titanocene Complexes [Ti(Cp′)₂(η²‐Me₃SiC≡CSiMe₃)] (Cp′ = Cp, Cp*) towards Benzenedicarboxylic Acids Titanocene complexes [Ti(Cp′)₂(BTMSA)] ( 1a , Cp′ = Cp = η⁵‐C₅H₅; 1b , Cp′ = Cp* = η⁵‐C₅Me₅; BTMSA = Me₃SiC≡CSiMe₃) were found to react with iodine and methyl iodide yielding [Ti(Cp′)₂(μ‐I)₂] ( 2a / b ; a refers to Cp′ = Cp and b to Cp′ = Cp*), [Ti(Cp′)₂I₂] ( 3a / b ) and [Ti(Cp′)₂(Me)I] ( 4a / b ), respectively. In contrast to 2a , complex 2b proved to be highly moisture sensitive yielding with cleavage of HCp* [{Ti(Cp*)I}₂(μ‐O)] ( 7 ). The corresponding reactions of 1a / b with p‐cresol and thiophenol resulted in the formation of [Ti(Cp′)₂{O(p‐Tol)}₂] ( 5a / b ) and [Ti(Cp′)₂(SPh)₂] ( 6a / b ), respectively. Reactions of 1a and 1b with 1,n‐benzenedicarboxylic acids (n = 2–4) resulted in the formation of dinuclear titanium(III) complexes of the type [{Ti(Cp′)₂}₂{μ‐1,n‐(O₂C)₂C₆H₄}] (n = 2, 8a / b ; n = 3, 9a / b ; n = 4, 10a / b ). All complexes were fully characterized analytically and spectroscopically. Furthermore, complexes 7 , 8b , 9a ·THF, 10a / b were also be characterized by single‐crystal X‐ray diffraction analyses.     

Designed Beta‐Turn Mimic Based on the Allylic‐Strain Concept: Evaluation of Structural and Biological Features by Incorporation into a Cyclic RGD Peptide (Cyclo(‐L‐arginylglycyl‐L‐α‐aspartyl‐))

The (3R,5S,6E,8S,10R)‐11‐amino‐3,5,8,10‐tetramethylundec‐6‐enoic acid (ATUA; 1 ), which was designed as a βII′‐turn mimic according to the concepts of allylic strain and 2,4‐dimethylpentane units, was incorporated into a cyclic RGD peptide. The three‐dimensional structure of cyclo(‐RGD‐ATUA‐) (=cyclo(‐Arg‐Gly‐Asp‐ATUA‐)) 4 in H₂O was determined by NMR techniques, distance geometry calculations and molecular‐dynamics simulations. The RGD sequence of 4 shows high conformational flexibility but some preference for an extended conformation. The structural features of the RGD sequence of 4 were compared with the RGD moiety of cyclo(‐RGDfV‐) (=cyclo(‐Arg‐Gly‐Asp‐D ‐Phe‐Val‐)). In contrast to cyclo(‐RGDfV‐), which is a highly active αvβ3 antagonist and selective against αIIbβ3, cyclo(‐RGD‐ATUA‐) shows a lower activity and selectivity. The structure of the ATUA residue in the cyclic peptide resembles a βII′‐turn‐like conformation. Its middle part, adjacent to the C?C bond, strongly prefers the designed and desired structure.