Einflüsse von substituenten in 6-stellung auf die 13C-chemischen verschiebungen der kohlenstoffatome des purins

The ¹³C chemical shifts of purines substituted in the 6 position are reported. Signals are assigned on the basis of general chemical shift rules and by proton “off-resonance” decoupling. Substituent effects (Z_6i) of the substituent X in the 6 position of purine on the ¹³C chemical shifts of purine ring carbon atoms are determined. A linear correlation exists between the substituent effects of X on C-6 (Z₆₆) and Pauling's electronegativity values E_x of the substituent X.     

1H and 13C NMR study of 8-hydroxyquinoline and some of its 5-substituted analogues

¹H and ¹³C NMR spectra of 8-hydroxyquinoline (oxine) and its 5-Me, 5-F, 5-Cl, 5-Br and 5-NO₂ derivatives have been studied in DMSO-d₆ solution. The ¹H and ¹³C chemical shifts and proton–proton, proton–fluorine, carbon–proton and carbon–fluorine coupling constants have been determined. The ¹H and ¹³C chemical shifts have been correlated with the charge densities on the hydrogen and carbon atoms calculated by the CNDO/2 method. The correlation of the ¹H and ¹³C chemical shifts with the total charge densities on the carbon atoms is approximately linear (r_H² = 0.85, r_C² = 0.84). The proton in peri position to the nitro group in 5-NO₂-oxine is an exception.     

Charge calculations in molecular mechanics. III: Amino acids and peptides

Atomic charges obtained with a previously published charge scheme are given for amino acids and peptides. In order to do this, a method of handling charged species with the basic scheme^2,3 has been developed. The charges obtained for alkylammonium ions and carboxylate ions with the scheme are presented and compared with CNDO and ab initio values. The calculated experimental dipole moments of the zwitterionic forms of glycine, alanine and β-alanine are then discussed. Finally, the atomic charges obtained for the naturally occurring amino acids are given, both in the form of the N-acetyl-N′-methyl amino acid amides, used as models for the amino acid residues in enzymes, and as the free zwitterionic amino acids. The charges obtained show a good correlation with n. m. r. chemical shifts of both carbon and hydrogen atoms.     

13C Chemical shifts of some azaindolizines versus electron charge distribution

Azaindolizines, which contain all possible combinations of nitrogen atoms within the five-membered ring moiety, are used as models for the investigation of a relationship between electron charge distribution and ¹³C shifts. A linear correlation is observed between the shifts and total rather than π-charge densities as calculated by the INDO-MO method. The average excitation energy (AEE) approximation in the theory of nuclear screening is shown to hold separately for the CH moieties and the carbon atoms at the ring junction in indolizines. An empirical correlation with charge densities is obtained from the AEE method, as a result of the compensation of effects within the local paramagnetic term and the prevailing contribution to the latter of the effective nuclear charge.¹³C shifts afford a reasonable measure of the total net charges at the carbon atoms of indolizines. The INDO calculations indicate that the π-charges follow the pattern suggested by simple resonance structures but the overall charge density depends heavily on σ-core polarization effects.     

A Quantum Chemical and Electrostatic Study of Alkyl and Substituted Benzenonium Cations and Related Molecules: The Effect of Atomic Charge Distribution on Carbocation Energy and Geometry

Geometries, NMR chemical shifts, atomic charges, and bond orders were calculated at the MP2/6-31G* level of theory for the isopropyl, sec-butyl, tert-butyl, benzenonium, and six methyl- and trifluoromethyl-substituted benzenonium ions. The NPA charges correlate better than the CHELPG, MK, and AIM charges with the experimental and calculated carbon chemical shifts. The electrostatic energies of isomeric ions, calculated by treatment of the NPA charges as point charges, are comparable to their MP2 energy differences. The electrostatic calculations, although classical approximations, provide a qualitative understanding of the coulombic basis of the methyl and trifluoromethyl substituent effects. It is apparent that these species are stabilized by having adjacent, oppositely charged atoms (for example, having the negatively charged carbon of a methyl group bonded to a positive carbon). It is proposed that a methyl group be termed a nucleophilic (rather than electron-donating) substituent and that a trifluoromethyl group be termed an electrophilic substituent. In the benzenonium ions and in toluene, fluoromethylbenzene, difluoromethylbenzene, and benzotrifluoride, the endocyclic angle at the substituent increases with increasing electrophilicity of the substituent. An electrostatic calculation again provides some insight into the coulombic basis of these changes.     

1H and 13C nmr studies of salicylalanilines

Several substituted salicylanilines (I) are studied by ¹H (chemical shifts) and ¹³C (chemical shifts and T₁ relaxation times) NMR in order to obtain information on molecular geometry changes and the transmission of the electronic effects due to substituents, as well as on the relative rates of the overall molecular tumbling and of the flipping of the phenyl rings. In particular, a good linear correlation of the OH proton shifts (affected by intramolecular hydrogen bonding) with Hammett's σ constants for p-substitution in the aniline moiety is found. Changes in rigidity of the rings expected as a result of the OH...N interaction and of p-substitution are reflected on the phenyl carbon relaxation times.     

On the alleged correlations between simple LCAO-MO reactivity indices and proton chemical shifts in planar,condensed, benzenoid hydrocarbons

Previous investigations into the proposed correlations between proton chemical shifts in conjugated hydrocarbons and the various LCAO-MO ‘reactivity indices’ (at the corresponding carbon atoms to which the peripheral protons are bonded), are here reassessed in the light of more-recently acquired experimental data, for the case of the planar, alternant, condensed, benzenoid hydrocarbons. A correlation coefficient of 0·73, statistically ‘significant’ at less than the ½% level, is obtained. Nevertheless, there are several unsatisfactory features of such proposed correlations (which are discussed), and, in the final analysis, no causative relation is expected between proton chemical shifts and reactivity indices in these molecules. Furthermore, the relative chemical shifts of the sterically unhindered protons in planar, alternant, benzenoid hydrocarbons can be accounted for by the ‘ring current’ effect alone, without the need to postulate a dependence of the proton chemical shifts on reactivity indices, which is in any case considered to be unlikely on physical grounds.     

Evaluation of the reactivity of new activated difluoroaromatic compounds

To evaluate the reactivity of new difluroroaromatic compounds in nucleophilic substitution, the positive charges on carbon atoms of C−F bonds were calculated using the quantum-chemical semiempirical PM3 method. A correlation between the charges calculated and the chemical shifts in the¹⁹F NMR spectra was established. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 4, pp. 623–625, April, 1998.     

Etudes des sélénophènes mono et bisubstitués par Résonance Magnétique de 1H et de 13C

Proton and carbon magnetic resonance spectra of mono-and disubstituted selenophenes are investigated. The proton chemical shifts are discussed in terms of magnetic anisotropy and electric field effects of the substituents, with a view to studying the conformational equilibrium of the carbonyl group. π Electronic charges, computed by the PPP method, are correlated with the proton and carbon chemical shifts. The coupling constants between ¹³C and ¹H (1, 2 or 3 bonds) and ¹³C? ⁷⁷Se are shown to be good structural parameters and a set of substituent additivity constants is calculated.     

Benchmarking computational chemistry approaches on iminodiacetic acid

In the present study, theoretical harmonic vibrational frequencies (IR and Raman), carbon and proton NMR chemical shifts, geometric parameters, atomic charges (only for heteroatoms), reactivity indices (eLUMO, eHOMO, electronegativity, and hardness), and thermodynamical data (inner energy, enthalpy, Gibbs free energy, and entropy) of iminodiacetic acid (IDA) molecule have been investigated. We utilized ORCA software for B3LYP and HF (combined with Pople and Karlsruhe basis sets) calculations and MOPAC2016 software for semi-empirical calculations (AM1, PM3, and PM6). Theoretical vibrational frequencies and carbon and proton NMR chemical shifts have been compared with the corresponding experimental data. Although there was a strong correlation between the experimental and computational vibrational frequencies at low frequencies (<2200 cm^?1), the computational predictions of vibrational frequencies were unsuccessful at high frequencies (>2200 cm^?1). Distinctly, the studied computational approaches appeared to perform better in the prediction of carbon and proton NMR chemical shifts. Theoretical vibrational frequencies were also compared to each other to understand the impact of method choice (HF vs B3LYP D3 vs semi-empirical methods), dispersion correction (B3LYP D3 vs B3LYP), water solvation (SMD supplemented vs non-supplemented calculations), the family of basis set (Pople vs Karlsruhe basis sets), numbers of zeta (double vs triple zeta), polarization function (polarized vs nonpolarized basis sets), and diffusion function (diffusion supplemented vs non-supplemented basis sets). Moreover, geometric parameters, heteroatom charges, reactivity indices, and thermodynamical data produced by distinct computational approaches, as well, were compared to each other. Based on these comparisons, we detected critical factors (such as water solvation) acting on the computation of geometries, energies, and charges.     

Correlations between the quantum-chemical parameters of amino acids and regioselectivity of isotope exchange with the spillover hydrogen

The effective charges and the proton affinity of carbon atoms of α-amino acids were calculated by quantum-chemical methods. The relative reactivity of the C−H bonds of amino acids under conditions of high-temperature solid-state catalytic isotope exchange (HSCIE) was studied. Correlations between the electron structure of amino acids and the regioselectivity of the solid-state isotope exchange were established. The reactivity of the carbon atoms with high proton affinity increases under HSCIE conditions. An assumption was made that the interaction of a solid organic compound with the spillover hydrogen can be described as the electrophilic substitution at the saturated and aromatic carbon atoms. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 9, pp. 1611–1617, September, 1997.     

New deuterium isotope effects on C and F chemical shifts across intramolecular hydrogen bonds of non-resonance assisted systems

A series of thioanilides and corresponding anilides, some of which contain fluorinated phenyl rings, have been synthesized as model compounds. They all contain rather strong intramolecular hydrogen bonds, the strength of which varies. Deuterium isotope effects on ¹⁹F and ¹³C chemical shifts due to deuteriation at the NH proton show interesting new long-range isotope effects on chemical shifts that may be related to the existence of an intramolecular hydrogen bond and to transmission of the isotope effect due to an electric field effect. Deuterium isotope effects on chemical shifts report on variations in hydrogen bonding, for example, as a function of changes in substituents or temperature. Deuteriation leads to a strengthening of the hydrogen bond.     

Hydrogen-bonding partner of the proton-conducting histidine in the influenza m2 proton channel revealed from (1)h chemical shifts

The influenza M2 protein conducts protons through a critical histidine (His) residue, His37. Whether His37 only interacts with water to relay protons into the virion or whether a low-barrier hydrogen bond (LBHB) also exists between the histidines to stabilize charges before proton conduction is actively debated. To address this question, we have measured the imidazole (1)H(N) chemical shifts of His37 at different temperatures and pH using 2D (15)N-(1)H correlation solid-state NMR. At low temperature, the H(N) chemical shifts are 8-15 ppm at all pH values, indicating that the His37 side chain forms conventional hydrogen bonds (H-bonds) instead of LBHBs. At ambient temperature, the dynamically averaged H(N) chemical shifts are 4.8 ppm, indicating that the H-bonding partner of the imidazole is water instead of another histidine in the tetrameric channel. These data show that His37 forms H-bonds only to water, with regular strength, thus supporting the His-water proton exchange model and ruling out the low-barrier H-bonded dimer model.     

Carbon-13 NMR spectroscopy of the biological pigments luteoskyrin and rugulosin and some polyhydroxyanthraquinone analogues

The bianthraquinonic biological pigments luteoskyrin and rugulosin and five polyhydroxyanthraquinone derivatives are studied by carbon-13 NMR in DMSO solution. Peak assignment for the fourteen carbon atoms of these compounds is achieved by proton spin decoupling and by investigating the effect of ionisation of the hydroxyl groups upon the carbon chemical shifts. Carbon chemical shifts in the planar hydroxyanthraquinones can be rationalised in terms of conjugation and intramolecular hydrogen bonding. The latter is responsible for the relative acidity of the hydroxyl groups in the analogues, and for the different conformations proposed for luteoskyrin and rugulosin. Tautomeric equilibria occur in DMSO and water–DMSO solutions for the anionic species [LS]^2? and [RG]^2?. This can account for the binding of luteoskyrin and rugulosin to nucleic acids.     

Pyrroles from ketoximes and acetylene. 13. Study of some substituted pyrroles by13C NMR spectroscopy and calculations with the CNDO/2 approximation

The¹³C chemical shifts of six substituted pyrroles are compared with the calculated charges of the corresponding carbon atoms. The correlation is linear only when the charges of the immediate environment are taken into account. The sensitivity of the¹³C chemical shift to a change in the charge is increased substantially in 1-vinylpyrroles as compared with their NH analogs. The energetically favorable conformations of the 2-methyl-1-vinyl molecule were established by the CNDO/2 method.See [18] for communication 12.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 5, pp. 627–631, May, 1980.     

Towards Accurate Predictions of Proton NMR Spectroscopic Parameters in Molecular Solids

The factors contributing to the accuracy of quantum-chemical calculations for the prediction of proton NMR chemical shifts in molecular solids are systematically investigated. Proton chemical shifts of six solid amino acids with hydrogen atoms in various bonding environments (CH, CH₂, CH₃, OH, SH and NH₃) were determined experimentally using ultra-fast magic-angle spinning and proton-detected 2D NMR experiments. The standard DFT method commonly used for the calculations of NMR parameters of solids is shown to provide chemical shifts that deviate from experiment by up to 1.5 ppm. The effects of the computational level (hybrid DFT functional, coupled-cluster calculation, inclusion of relativistic spin-orbit coupling) are thoroughly discussed. The effect of molecular dynamics and nuclear quantum effects are investigated using path-integral molecular dynamics (PIMD) simulations. It is demonstrated that the accuracy of the calculated proton chemical shifts is significantly better when these effects are included in the calculations.     

Simultaneous Estimation of Two Coupled Hydrogen Bond Geometries from Pairs of Entangled NMR Parameters: The Test Case of 4-Hydroxypyridine Anion

The computational method for estimating the geometry of two coupled hydrogen bonds with geometries close to linear using a pair of spectral NMR parameters was proposed. The method was developed based on the quantum-chemical investigation of 61 complexes with two hydrogen bonds formed by oxygen and nitrogen atoms of the 4-hydroxypyridine anion with OH groups of substituted methanols. The main idea of the method is as follows: from the NMR chemical shifts of nuclei of atoms forming the 4-hydroxylpyridine anion, we select such pairs, whose values can be used for simultaneous determination of the geometry of two hydrogen bonds, despite the fact that every NMR parameter is sensitive to the geometry of each of the hydrogen bonds. For these parameters, two-dimensional maps of dependencies of NMR chemical shifts on interatomic distances in two hydrogen bonds were constructed. It is shown that, in addition to chemical shifts of the nitrogen atom and quaternary carbon, which are experimentally difficult to obtain, chemical shifts of the carbons and protons of the CH groups can be used. The performance of the proposed method was evaluated computationally as well on three additional complexes with substituted alcohols. It was found that, for all considered cases, hydrogen bond geometries estimated using two-dimensional correlations differed from those directly calculated by quantum-chemical methods by not more than 0.04 Å.     

Characterization of fluxional hydrogen-bonded complexes of acetic acid and acetate by NMR: geometries and isotope and solvent effects

1H, (2)H, and (13)C NMR spectra of enriched CH(3)(13)COOH acid without and in the presence of tetra-n-butylammonium acetate have been measured around 110 K using a liquefied Freon mixture CDF(3)/CDF(2)Cl as a solvent, as a function of the deuterium fraction in the mobile proton sites. For comparison, spectra were also taken of the adduct CH(3)(13)COOH.SbCl(5) 1 and of CH(2)Cl(13)COOH under similar conditions, as well as of CH(3)(13)COOH and CH(3)(13)COO(-) dissolved in H(2)O and D(2)O at low and high pH at 298 K. The low temperatures employed allowed us to detect several well-known and novel hydrogen-bonded complexes in the slow hydrogen bond exchange regime and to determine chemical shifts and coupling constants as well as H/D isotope effects on chemical shifts from the fine structure of the corresponding signals. The measurements show that self-association of both carboxylic acids in Freon solution gives rise exclusively to the formation of cyclic dimers 2 and 3 exhibiting a rapid degenerate double proton transfer. For the first time, a two-bond coupling of the type (2)J(CH(3)COOH) between a hydrogen-bonded proton and the carboxylic carbon has been observed, which is slightly smaller than half of the value observed for 1. In addition, the (1)H and (2)H chemical shifts of the HH, HD, and the DD isotopologues of 2 and 3 have been determined as well as the corresponding HH/HD/DD isotope effects on the (13)C chemical shifts. Similar "primary", "vicinal", and "secondary" isotope effects were observed for the novel 2:1 complex "dihydrogen triacetate" 5 between acetic acid and acetate. Another novel species is the 3:1 complex "trihydrogen tetraacetate" 6, which was also characterized by a complex degenerate combined hydrogen bond- and proton-transfer process. For comparison, the results obtained previously for hydrogen diacetate 4 and hydrogen maleate 7 are discussed. Using an improved (1)H chemical shift-hydrogen bond geometry correlation, the chemical shift data are converted into hydrogen bond geometries. They indicate cooperative hydrogen bonds in the cyclic dimers; i.e., widening of a given hydrogen bond by H/D substitution also widens the other coupled hydrogen bond. By contrast, the hydrogen bonds in 5 are anticooperative. The measurements show that ionization shifts the (13)C signal of the carboxyl group to low field when the group is immersed in water, but to high field when it is embedded in a polar aprotic environment. This finding allows us to understand the unusual ionization shift of aspartate groups in the HIV-pepstatin complex observed by Smith, R.; Brereton, I. M.; Chai, R. Y.; Kent, S. B. H. Nature Struct. Biol. 1996, 3, 946. It is demonstrated that the Freon solvents used in this study are better environments for model studies of amino acid interactions than aqueous or protic environments. Finally, a novel correlation of the hydrogen bond geometries with the H/D isotope effects on the (13)C chemical shifts of carboxylic acid groups is proposed, which allows one to estimate the hydrogen bond geometries and protonation states of these groups. It is shown that absence of such an isotope effect is not only compatible with an isolated carboxylate group but also with the presence of a short and strong hydrogen bond.     

Towards a quantum chemical software package utilizing transferable fragments as molecular building blocks

Computer programs have been developed or are under development for the IBM personal computer that enable their users to get information on atomic charges, electrostatic potentials, conformational and other properties of molecular systems containing H, C, N, O, F, Si, P, S, or Cl atoms. The zero-order wavefunction is constructed of strictly localized molecular orbitals with fixed atomic orbital coefficients. The wave function can be refined by optimizing these coefficients, i.e., considering inductive effects via a coupled set of 2 × 2 secular equations within the CNDO /2 approximation. Delocalization and exchange effects are accounted for by expanding the wavefunction on a basis of the aforementioned strictly localized orbitals, instead of conventional atomic orbitals, and solving the corresponding SCF equations. Our method has been applied to the study of large systems. We calculated the electrostatic field of the complex of β-trypsin and basic pancreatic trypsin inhibitor and it has been found that strong field regions more or less coincide with hydration sites. A further potential application of protein electrostatic fields is in NMR spectroscopy. We found a linear correlation between C^αH or backbone NH proton chemical shifts and the protein field at the site of the corresponding proton. At last, we propose a simple method to mimic the bulk around atomic clusters modeling crystalline and amorphous silicon. Based on this method we found a linear correlation between atomic net charges and bond angle distortions in silicon clusters with 35 atoms.     

Nitrogen nuclear magnetic resonance spectroscopy. Nitrogen-15 and proton chemical shifts of methylanilines and methylanilinium ions

Nitrogen and carbon electron densities of the toluidines and xylidines have been recalculated by the INDO method; previously published errors have been corrected. Although the nitrogen-15 chemical shifts of these compounds still display the earlier suggested correlation with σ and total electron densities, the calculated inverse correlation with proton electron densities has been shown to be incorrect. Methyl proton chemical shifts of these compounds display no meaningful correlation with the nitrogen shifts. The nitrogen chemical shifts of the toluidinium and xylidinium ions correlate moderately well with the ¹³C chemical shifts of the analogous di- and tri-methylbenzenes.