Functional monomers and polymers. XXXXVII. Complex formation of stereoregular methacryloyl-type polymers containing nucleic acid bases

The complex formation between a poly(N-β-methacryloyloxyethyl) derivative of adenine with one of thymine or uracil was studied in dimethyl sulfoxide and ethylene glycol mixture by ultraviolet (UV) spectroscopy. For the polymer pairs containing complementary nucleic acid bases both hypochromicity and hyperchromicity were found. Stereoregularity of the polymers, as well as the conditions for measurement of, for example, solvent, temperature, and time, affected the complex formation. Both inter- and intramolecular interaction of polymers in solution were discussed in some detail.     

Functional monomers and polymers. CXXI. Methylation and interaction studies on adenine containing polymethacrylate derivatives

Studies of the methylation of polymethacrylate derivatives with adenine bases were made in comparison to those with uracil bases. The polymethacrylate derivatives with adenine bases were methylated by using methyl iodide in dimethyl sulfoxide solution to produce polymers that contained N¹-methyladenine and N¹, N⁶-dimethyladenine units. The products were identified by spectroscopic data and by preparing their model compounds. The methylated polymers obtained were further applied in a study of polymer complex formation with uracil-base polymers.     

Functional monomers and polymers. XXXXI. Template polymerization of methacryloyl-type monomers containing nucleic acid bases

In due consideration of the specific base–base interaction that exists between nucleic acid molecules, the free radical polymerization of N-β-methacryloyloxyethyl derivatives of adenine, thymine, and theophylline initiated by azobisisobutyronitrile (AIBN) was studied in the presence of N-β-methacryloyloxyethyl-type polymers which have complementary nucleic acid bases as template polymers. The rate of polymerization of N-β-methacryloyloxyethyladenine was accelerated when poly(N-β-methacryloyloxyethyluracil) or -thymine was present in the polymerization system. The effect of the stereoregularity of the template polymers, as well as polymerization temperature and the sort of solvents used on the rate of polymerization, was studied and discussed in some detail. The results suggest that the interaction between complementary bases plays a role in template polymerization behavior.     

Functional monomers and polymers. XXXXVI. A copolymerization study of methacryloyl-type monomers containing nucleic acid bases in chloroform solution

Behavior of the free radical copolymerization of N-β-methacryloyloxyethyl derivatives of adenine with that of thymine was studied in chloroform solution, taking account of the specific base-base interaction of these monomers. Hydrogen bonding interaction between such monomers was observed by NMR spectroscopy. The acceleration of copolymerization was found to be greater either at lower monomer concentration or at lower polymerization temperature. When N-β-methacryloyloxyethylcarbazole was used as a comonomer, the rate of copolymerization showed a similar trend as in the case of usual free radical copolymerizations. From r₁ and r₂ values obtained, the copolymerization was found to be alternating, particularly in the case of copolymerization between monomers having complementary nucleic acid bases. The results suggest that the hydrogen bonding interaction between adenine and thymine plays a role in the propagation step.     

Functional monomers and polymers. CXVII. Photochemical reactions on oligo- and polyethyleneimines containing pendant thymine bases: Effect of the spacer

The photodimerization reaction of thymine bases incorporated in the modified oligo- and polyethyleneimines, in which α-alanine or ß-alanine unit was inserted between the main chain and the pendant thymine bases, was studied both in aqueous and in dimethyl sulfoxide solutions. It was found that the quantum yields for the photodimerization for the oligomers were closely related to the intramolecular interaction in the ground state, while those of the copolymers were not related to the ground state interaction. It was suggested that the singlet energy migration was present in the case of the polyethyleneimine derivatives. This result is discussed in terms of the effects of the nearest-neighboring thymine units, the structure of the side chain, and the singlet energy migration, particularly for the copolymers.     

Functional monomers and polymers. LXXXVI. Photochemical reactions on synthetic polymers with pendant thymine bases: Effect of solvents

Photodimerization of thymine bases present on the side chain of acryloyl and methacryloyl-type polymers was studied in dimethyl sulfoxide, dimethylformamide, and dimethyl sulfoxide—ethylene glycol mixture. Quantum efficiencies for photodimerization and quenching with isoprene were influenced by the solvents. The self-association of thymine bases estimated from their ultraviolet (UV) spectra and intrinsic viscosity were related to the effect of solvent on the photodimerization.     

Functional monomers and polymers. CIV. Synthesis and properties of oligomer models of polyethyleneimine derivatives with spacer-separated nucleic acid bases

A series of polyethyleneimine derivatives and their oligomer models with pendant thymine or adenine bases separated by β-alanyl groups as spacers were prepared by an activated ester method. To elucidate the nature of intramolecular interaction of thymine and adenine bases ultraviolet (UV) spectrophotometric studies were undertaken for the series of compounds and the results were compared with those obtained for the corresponding oligomers without spacers. In the thymine derivatives, the nature of the intramolecular interaction resembled that of the corresponding compounds without β-alanyl units, although larger hypochromicities were found in the series with β-alanyl units. In the adenine derivatives, contrary to the corresponding thymine systems, UV hypochromicities of the compounds decreased by incorporation of the spacer group into side chains. It became evident that the intramolecular interaction of adenine bases was due to stacking neutral species, hydrogen bonding, and residual hypochromicity for the protonated species.     

Functional monomers and polymers. XCVI. Photochemical reactions on oligo- and polyethyleneimines which contain pendant thymine bases

The photodimerization reaction of oligo- and polyethyleneimine derivatives which contain pendant thymine bases in various amounts was studied in aqueous solution in a wide pH range and in N, N-dimethylformamide solution. The photodimerization reaction of these derivatives in poly(methyl methacrylate) was also studied. It was found that its quantum efficiency tended to increase as thymine units were added to the oligomers and copolymers. This result is discussed in terms of the effect of the nearest neighboring thymine units and singlet energy migration, particularly in the polymers.     

Functional monomers and polymers. CII. Synthesis and properties of oligomer models of polyethyleneimine derivatives containing pendant adenine bases

A series of oligomer model compounds of polyethyleneimine derivatives with pendant adenine bases were prepared by the reaction of a carboxyethyl derivative of adenine with oligomeric amines, using an activated ester method. To evaluate the intramolecular interaction between pendant adenine bases in these compounds, ultraviolet spectra at various pH regions were measured. Ultraviolet hypochromicities and pK_a values depended linearly on the chain length of the oligomers. The results showed that the intramolecular interactions of adenine bases were realized less in their protonated than neutral forms.     

Functional monomers and polymers. XIX. Copolymerization of vinyl monomers containing nucleic acid bases

Taking into account the specific base–base interaction existing between nucleic acid molecules, we studied the free-radical copolymerization of N-β-methacryloyloxyethyl derivative of uracil with that of adenine at 60°C in various solvents. N-β-Methacryloyloxyethyltheophylline as well as methyl methacrylate were used also as comonomers. From the data on the rates in different comonomer feed ratios and the r₁ and r₂ values obtained, copolymerizability was discussed in some detail. The results suggest that the interaction between uracil and adenine bases plays a role in the copolymerization behavior.     

Vinylsulfonylethyl derivatives of nucleic acid bases and their graft polymers on polyethyleneimine

Vinylsulfonylethyl (VSE) derivatives of the nucleic acid bases adenine, thymine, cytosine, and the nucleosides inosine and uridine have been prepared via a simple Michael reaction with divinyl sulfone. The VSE derivatives were grafted on a polyethyleneimine (PEI) backbone. PEI of different molecular weights (1400, 1800 and 50,000–100,000) were used and also two different molar ratios (1:1 and 1:2) of monomer to PEI were employed. From the ¹H-NMR and elemental analysis, it appeared that in almost all instances the grafting was quantitative. In one case, both 1-VSE-thymine and 9-VSE-adenine were grafted on the same PEI backbone. Interactions between some of these polymers were investigated by UV spectroscopy. The expected complementary base pairing was observed only in DMSO–ethylene glycol solvent system but not in DMSO. The adenine polymer showed a one-to-one interaction with the thymine polymer.     

1,2,4-Triazolo[4,3-c]pyrimidines from 4-acylhydrazinopyrimidines

The reaction of N¹-acetylacetamidrazones 1 with N-[bis(methylthio)methylene]cyanamide (2) at room temperature in the presence of potassium carbonate in dimethyl sulfoxide affords good yields of ethyl 4-acylhydrazino-2-amino-6-methylthio-5-pyrimidine carboxylate 3 . By briefly refluxing compounds 3 in dimethyl sulfoxide, 1,2,4-triazolo[4,3-c]pyrimidine derivatives 4 were obtained. When equimolecular amounts of N¹-acylacetamidrazones and compounds 2 were refluxed in dimethyl sulfoxide/toluene, compounds 4 were obtained directly.     

Functional monomers and polymers. CLIV. Application of nucleic acid base containing polymers to high performance liquid chromatography

Poly-L -lysine (PLL) derivatives containing pendant nucleic acid base, such as thymine or adenine, were bonded successfully to 3-aminopropylsilanized silica (APS-silica) and silica gel. These resins were found to be useful as the column of high performance liquid chromatography (HPLC) for the selective separation of oligoethyleneimine derivatives having pendant thymine or adenine bases.     

Functional monomers and polymers. LXXI. Conformation and interaction studies of poly-L-lysine derivatives with pendant nucleic acid bases

Copolymers of L -lysine and L -lysine derivatives which contained nucleic acid bases substituted on the N^ε position were synthesized by grafting nucleic acid derivatives onto poly-L -lysine. The conformation and interaction of these copolymers in solution were studied by using spectroscopic measurements. They existed in helical conformation at neutral pH values, and the polymer complex formation among them was examined by ultraviolet (UV) measurements in organic solvents. A decrease in the nucleic acid base content of the copolymers resulted in a decrease in helical structures and also in interactions with the polymer-containing complementary bases.     

Effect of Aprotic Solvents on Intermolecular Interaction of Cellulose Macromolecule with N-Methylmorpholine N-Oxide Monohydrate

The influence of aprotic cosolvents dimethyl sulfoxide, dimethylformamide, and dimethylacetamide on interaction of N-methylmorpholine N-oxide with cellulose was studied.     

Functional monomers and polymers. LXI. Photochemical reactions on the synthetic polymers containing thymine bases

Photodimerization of N-2-isobutyloxyethyl thymine (T-M), bis[2-(5-methyl-1-primidinyl)-ethyl] glutarate (T-T), poly(N-2-methacryloyloxyethyl thymine) (polyMAOT), and poly(N-2-acryloyloxyethyl thymine) (poly AOT) was studied in dimethylformamide solution. The rate of intramolecular photodimerization of polyMAOT and polyAOT was 5.7 and 7.2 times faster, respectively, than that of T-T. In T-M, however, intermolecular photodimerization did not occur under the reaction condition used. Quenching studies with isoprene suggest that the photodimerization of T-T occurs predominantly in an excited triplet state, whereas that of polyMAOT and polyAOT occur in singlet and triplet states. It was concluded that the photodimers of T-T, polyMAOT, and polyAOT are two syn-fused cyclobutane-type dimers (cis-syn and trans-syn). Quantum efficiencies of thymine base disappearance were determined by ultraviolet (UV) analysis to be 0.0012 for T-T, 0.0084 for polyMAOT, and 0.010 for polyAOT.     

Interaction Between DNA and Some Salicylic Acid Derivatives and Characterization of Their DNA Targets

A nanofiber polypyrrole (PPy) film was electrochemically deposited on a Pt electrode and used for immobilization of single‐stranded DNA (ssDNA) and investigation of hybridization events. Then, the interaction of DNA with four salicylic acid (SA) derivatives was studied with electrochemical methods. The oxidation peak of guanine was decreased by increasing the concentrations of salicylic acid derivatives. The binding constants of these compounds with four different sequences of DNA including different percentages of guanine‐cytosine and adenine‐thymine bases were calculated and it was clarified that sequences with higher percentage of adenine‐thymine bases have a higher binding constant in their interaction with SA derivatives.     

Synthesis of pyrimidine derivatives using N-bis(methylthio)methylenecyanamide

N-Bis(methylthio)methylenecyanamide ( 1 ) was allowed to react with active methylene compounds (methyl cyanoacetate, dimethyl malonate, ethyl acetoacetate, ethyl phenylacetate) in the presence of potassium carbonate or potassium hydroxide in dimethyl sulfoxide followed by the treatment using appropriate a base or an acid to give the corresponding 6-methylthiouracil derivatives in 15–80% yields. These uracil derivatives are found to be useful intermediates for the synthesis of 6-aminouracils and fused pyrimidine derivatives.     

Mechanism of the formation of 1,2,4‐thiadiazoles by condensation of aromatic thioamides and of N‐substituted thioureas

The condensation reaction of thiobenzamide, (as well as thionicotinamide and isothionicotinamide) in the presence of dimethyl sulfoxide and of an acid, affords 3,5‐diphenyl‐1,2,4‐thiadiazole. Under the same experimental conditions, N‐substituted thioureas are also condensed to 1,2,4‐thiadiazole derivatives; their structure is ascertained by spectroscopic properties and by X‐ray diffraction. Some information on the mechanism of thiadiazoles formation from both starting classes of compounds, thiobenzamides and N‐substituted thiourea, is collected and discussed.     

Semi‐interpenetrating polymer networks based on crosslinked poly(N‐isopropyl acrylamide) and methylcellulose prepared by frontal polymerization

In this work, semi‐interpenetrating gels of poly(N‐isopropyl acrylamide) and methylcellulose were successfully synthesized by using the Frontal Polymerization (FP) technique. The gels were obtained in the presence of dimethyl sulfoxide and trihexyltetradecylphosphonium persulfate, as polymerization solvent and radical initiator, respectively, hence avoiding the formation of bubbles during polymerization. Then, some of the gels containing dimethyl sulfoxide were thoroughly washed with water, hence obtaining the corresponding hydrogels. The effects of the ratio between poly(N‐isopropyl acrylamide) and methylcellulose, the amount of crosslinker and solvent medium (i.e., dimethyl sulfoxide and water) were thoroughly studied, assessing the influence of temperature and velocity of FP fronts on the glass transition temperature values (dried samples), on the swelling behavior and on the dynamic‐mechanical properties (gels swollen both in water and dimethyl sulfoxide). © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2018 , 56, 437–443