Are Boryl Radicals from Amine–Boranes and Phosphine–Boranes the Most Stable Radicals?

The relative stability of the radicals that can be produced from amine–boranes and phosphine–boranes is investigated at the G3‐RAD level of theory. Aminyl ([RNH]^.:BH₃) and phosphinyl ([RPH]^.:BH₃) radicals are systematically more stable than the boryl analogues, [RNH₂]:BH₂^. and [RPH₂]:BH₂^.. Despite similar stability trends for [RNH]^.:BH₃ and [RPH]^.:BH₃ radicals with respect to boryl radicals, there are significant dissimilarities between amine– and phosphine–boranes. The homolytic bond dissociation energy of the N?H bond decreases upon association of the amines with BH₃, whereas that of the P?H bond for phosphines increases. The stabilization of the free amine is much smaller than that of the corresponding aminyl radical, whereas for phosphines this is the other way around. The homolytic bond dissociation energy of the B?H bond of borane decreases upon complexation with both amines and phosphines.     

Hairy Core–Shell Nanoparticles via RAFT: Where are the Opportunities and Where are the Problems and Challenges?

The preparation of hairy core–shell nanoparticles including (crosslinked) micelles, unimolecular micelles such as star polymers with block structures in each arm and surface grafted nanoparticles such as inorganic particles via the RAFT process are discussed. The RAFT process is certainly a highly versatile process. However, it should not be forgotten that RAFT polymerization is a process, i.e., superimposed on a conventional free radical process. Furthermore, the livingness of the process is dependent on the accessibility of the RAFT group, which can be hampered in certain approaches such as star synthesis and surface grafting from nanoparticles. Nevertheless, the RAFT process is a versatile toolbox that offers good solutions to a range of problems in the preparation of hairy nanoparticles.

     

Why does the Cassie–Baxter equation apply?

Application of the Cassie–Baxter equation to the calculation of apparent contact angles is discussed. It is demonstrated that taking into account the precursor film surrounding the drop justifies the application of the Cassie–Baxter equation. Consideration of the precursor film is important for design of self-cleaning superhydrophobic surfaces.     

“What is KRI?” – R&D based on excellent tradition and innovation –

As far as KRI's clients were concerned, KRI's appeal was not only in having researchers who had a high level of expert knowledge, but it was also in the efficiency with which high risk jobs were conducted, and the speed of response time, especially when corporations made comparisons with their own in‐house labs. KRI, while being a facility for contract research, is also capable of becoming a profitable corporation, mostly thanks to the adoption of this system. KRI sincerely hopes to continue serving as a group made up of quality professionals who embrace a dream, and to contribute to society through its achievements. At the same time, the company strives to be sensitive to changing needs, and, of course, to conduct R&D and consulting activities which will ensure success for its clients.     

Strong interactions through the XAu–Y bridge: the Au bond?

The interaction between AuOH and the lone-pair donors (HF, H₂O) is shown to result in well-bound complexes whose structure resembles that of the corresponding H-bonded systems with the gold atom replacing hydrogen. The dissociation energies are estimated to be 10.7 and 27.4 kcal/mol for HFAu–OH and H₂OAu–OH, respectively. However, the interaction between AuOH and the lone pair donors is found to involve significant charge transfer. Furthermore, the Au–O stretching frequency increases upon the complex formation. It is concluded that, in spite of certain similarity to the H-bonded species, the Au-bonded complexes should be considered as Lewis acid–base pairs.     

Is the DPT tautomerization of the long A·G Watson–Crick DNA base mispair a source of the adenine and guanine mutagenic tautomers? A QM and QTAIM response to the biologically important question

Herein, we first address the question posed in the title by establishing the tautomerization trajectory via the double proton transfer of the adenine·guanine (A·G) DNA base mispair formed by the canonical tautomers of the A and G bases into the A*·G* DNA base mispair, involving mutagenic tautomers, with the use of the quantum‐mechanical calculations and quantum theory of atoms in molecules (QTAIM). It was detected that the A·G ? A*·G* tautomerization proceeds through the asynchronous concerted mechanism. It was revealed that the A·G base mispair is stabilized by the N6H···O6 (5.68) and N1H···N1 (6.51) hydrogen bonds (H‐bonds) and the N2H···HC2 dihydrogen bond (DH‐bond) (0.68 kcal·mol^?1), whereas the A*·G* base mispair—by the O6H···N6 (10.88), N1H···N1 (7.01) and C2H···N2 H‐bonds (0.42 kcal·mol^?1). The N2H···HC2 DH‐bond smoothly and without bifurcation transforms into the C2H···N2 H‐bond at the IRC = ?10.07 Bohr in the course of the A·G ? A*·G* tautomerization. Using the sweeps of the energies of the intermolecular H‐bonds, it was observed that the N6H···O6 H‐bond is anticooperative to the two others—N1H···N1 and N2H···HC2 in the A·G base mispair, while the latters are significantly cooperative, mutually strengthening each other. In opposite, all three O6H···N6, N1H···N1, and C2H···N2 H‐bonds are cooperative in the A*·G* base mispair. All in all, we established the dynamical instability of the А*·G* base mispair with a short lifetime (4.83·10^?14 s), enabling it not to be deemed feasible source of the A* and G* mutagenic tautomers of the DNA bases. The small lifetime of the А*·G* base mispair is predetermined by the negative value of the Gibbs free energy for the A*·G* → A·G transition. Moreover, all of the six low‐frequency intermolecular vibrations cannot develop during this lifetime that additionally confirms the aforementioned results. Thus, the A*·G* base mispair cannot be considered as a source of the mutagenic tautomers of the DNA bases, as the A·G base mispair dissociates during DNA replication exceptionally into the A and G monomers in the canonical tautomeric form. © 2013 Wiley Periodicals, Inc.     

How good is a Broyden–Fletcher–Goldfarb–Shanno-like update Hessian formula to locate transition structures? Specific reformulation of Broyden–Fletcher–Goldfarb–Shanno for optimizing saddle points

Based on a study of the Broyden–Fletcher–Goldfarb–Shanno (BFGS) update Hessian formula to locate minima on a hypersurface potential energy, we present an updated Hessian formula to locate and optimize saddle points of any order that in some sense preserves the initial structure of the BFGS update formula. The performance and efficiency of this new formula is compared with the previous updated Hessian formulae such as the Powell and MSP ones. We conclude that the proposed update is quite competitive but no more efficient than the normal updates normally used in any optimization of saddle points. © 1998 John Wiley & Sons, Inc. J Comput Chem 19: 349–362, 1998     

Does Hydrogen‐Bonding Donation to Manganese(IV)–Oxo and Iron(IV)–Oxo Oxidants Affect the Oxygen‐Atom Transfer Ability? A Computational Study

Iron(IV)–oxo intermediates are involved in oxidations catalyzed by heme and nonheme iron enzymes, including the cytochromes P450. At the distal site of the heme in P450 Compound I (Fe^IV–oxo bound to porphyrin radical), the oxo group is involved in several hydrogen‐bonding interactions with the protein, but their role in catalysis is currently unknown. In this work, we investigate the effects of hydrogen bonding on the reactivity of high‐valent metal–oxo moiety in a nonheme iron biomimetic model complex with trigonal bipyramidal symmetry that has three hydrogen‐bond donors directed toward a metal(IV)–oxo group. We show these interactions lower the oxidative power of the oxidant in reactions with dehydroanthracene and cyclohexadiene dramatically as they decrease the strength of the O? H bond (BDE_OH) in the resulting metal(III)–hydroxo complex. Furthermore, the distal hydrogen‐bonding effects cause stereochemical repulsions with the approaching substrate and force a sideways attack rather than a more favorable attack from the top. The calculations, therefore, give important new insights into distal hydrogen bonding, and show that in biomimetic, and, by extension, enzymatic systems, the hydrogen bond may be important for proton‐relay mechanisms involved in the formation of the metal–oxo intermediates, but the enzyme pays the price for this by reduced hydrogen atom abstraction ability of the intermediate. Indeed, in nonheme iron enzymes, where no proton relay takes place, there generally is no donating hydrogen bond to the iron(IV)–oxo moiety.     

Generating CuII–Oxyl/CuIII–Oxo Species from CuI–α‐Ketocarboxylate Complexes and O2: In Silico Studies on Ligand Effects and C?H‐Activation Reactivity

Theoretically speaking : The mechanistic details associated with the generation and reaction of [CuO]⁺ species from Cu^I–α‐ketocarboxylate complexes, especially with respect to modifications of the ligand supporting the copper center, were investigated (see scheme). Theoretical models were used to characterize the electronic structures of different [CuO]⁺ species and their reactivity in C? H activation and O‐atom transfer reactions.

     

Structural-dimensional effects and their application in the "core—nanoshell" systems synthesized by the molecular layering

In connection with the development of nanotechnology in the last 15—20 years, the method of molecular layering (ML), created in the middle of the last century in the USSR, has attracted increasing attention. The features of structural-dimensional effects in the products obtained by new chemical nanotechnology and promising directions of their practical application in "core—nanoshell" compositions are considered in the review. In accordance with the synthetic capabilities of the ML method, the functional properties of the "core—nanoshell" type materials are affected by the "monolayer effect" and the substrate shielding effect, as well as the multicomponent nature of the system, and mutual structural coordination effect of the substrate and the build-up nanolayer. The review presents theoretical and experimental data on the application of the observed effects in the creation of shell pigments and fillers, modified sorbents, catalytic membrane reactors, nanodoped ceramic materials, polymers, quartz fibers with adjustable optical characteristics, electrets, etc.     

Multicenter Homogeneous Dendritic Catalysts: The Higher the Generation,the Better the Reactivity and Selectivity? – A Comparative Study of the Catalytic Efficiency of Dendrimeric [1,1′‐Binaphthalene]‐2,2′‐diol‐Derived Catalysts

The G0 and G1 generations of optically active, multicenter 1,1′‐binaphthalene‐based dendritic ligands 4 and 5 constructed on a rigid oligo(arylene) framework were prepared by divergent synthesis. Their corresponding aluminum complexes 1 and 2 , respectively, were shown to possess slightly better reactivity and enantioselectivity than those of a monomeric 1,1′‐binaphthalene catalyst 3 in the Diels–Alder reaction between cyclopentadiene and 3‐[(E)‐but‐2‐enoyl]‐oxazolidin‐2‐one.     

Towards a universal LC–MS screening procedure – can an LIT LC–MSn screening approach and reference library be used on a quadrupole‐LIT hybrid instrument?

In contrast to libraries with highly reproducible gas chromatography electron ionization mass spectra, current liquid chromatography (LC–MS) libraries are limited to specific instrument types. Therefore, the aim of the study was to prove whether a recently developed linear ion trap (LIT) LC–MSⁿ screening approach and reference library can be transferred to an LC–MS/MS system with a quadrupole‐LIT hybrid mass analyzer using SmileMS, a sophisticated search algorithm. The LIT reference library was built with MS² and MS³ wideband spectra recorded on a ThermoFisher LXQ LIT with electrospray ionization in positive mode and full‐scan data‐dependent acquisition (DDA). Collision parameter optimizations, including different scan types and energies, were performed on an Applied Biosystems QTRAP 4000 system using electrospray ionization in positive mode and full‐scan DDA. Modified library sets were generated to improve the detection of a compound by the used search algorithm. Additionally, 100 authentic human urine samples were screened by both systems for proof of applicability. In the applicability study, 533 compounds were detected by the LXQ and 477 by the QTRAP system using enhanced product ion scan and a modified database. The presented data showed that the LIT screening approach and reference library could be used successfully on a QTRAP instrument with some limitations. These should be overcome by further optimizations regarding DDA settings for better sensitivity and further library modifications to reduce spectra mismatches. Copyright © 2012 John Wiley & Sons, Ltd.     

Comparison of the Active Species in the RF and Microwave Flowing Discharges of N<Subscript>2</Subscript> and Ar–20 %N<Subscript>2</Subscript>

We report a detailed comparison between RF and microwave (HF) plasmas of N₂ and Ar–20 %N₂ as well as in the corresponding afterglows by comparing densities of active species at nearly the same discharge conditions of tube diameter (5–6 mm), gas pressure (6–8 Torr), flow rate (0.6–1.0 slm) and applied power (50–150 W). The analysis reveals an interesting difference between the two cases; the length of the RF plasma (~25 cm) is measured to be much longer than that of HF (6 cm). This ensures a much longer residence time (10^?2 s) of the active species in the N₂ RF plasma [compared to that (10^?3 s) of HF], providing a condition for an efficient vibrational excitation of N₂(X, v) by (V–V) climbing-up processes, making the RF plasma more vibrationally excited than the HF one. As a result of high V–V plasma excitation in RF, the densities of the vibrationally excited N₂(X, v > 13) molecules are higher in the RF afterglow than in the HF afterglow. Destruction of N₂(X, v) due to the tube wall is estimated to be very similar between the two system as can be inferred from the γ_v destruction probability of N₂(X, v > 3–13) on the tube wall (2–3 × 10^?3 for both cases) obtained from a comparison between the density of N₂(X, v > 3–9) in the plasmas to that of the N₂(X, v > 13) in the long afterglows. Interestingly enough, densities of N-atoms and N₂(A) metastable molecules in the afterglow regions, however, are measured to be very similar with each other. The measured lower density of N₂ ⁺ ions than expected in the HF afterglow is rationalized from a high oxygen impurity in our HF setup since N₂ ⁺ ions are very sensitive to oxygen impurity .     

Ketone–Alcohol Hydrogen‐Transfer Equilibria: Is the Biooxidation of Halohydrins Blocked?

To ensure the quasi‐irreversibility of the oxidation of alcohols coupled with the reduction of ketones in a hydrogen‐transfer (HT) fashion, stoichiometric amounts of α‐halo carbonyl compounds have been employed as hydrogen acceptors. The reason that these substrates lead to quasi‐quantitative conversions has been tacitly attributed to both thermodynamic and kinetic effects. To provide a clear rationale for this behavior, we investigate herein the redox equilibrium of a selected series of ketones and 2‐propanol by undertaking a study that combines experimental and theoretical approaches. First, the activity of the (R)‐specific alcohol dehydrogenase from Lactobacillus brevis (LBADH) with these substrates was studied. The docking of acetophenone/(R)‐1‐phenyethanol and α‐chloroacetophenone/(S)‐2‐chloro‐1‐phenylethanol in the active site of the enzyme confirms that there seems to be no structural reason for the lack of reactivity of halohydrins. This assumption is confirmed by the fact that the corresponding aluminum‐catalyzed Meerwein–Ponndorf–Verley–Oppenauer (MPVO) reactions afford similar conversions to those obtained with LBADH, showing that the observed reactivity is independent of the catalyst employed. While the initial rates of the enzymatic reductions and the IR ν(C?O) values contradict the general belief that electron‐withdrawing groups increase the electrophilicity of the carbonyl group, the calculated ΔG values of the isodesmic redox transformations of these series of ketones/alcohols with 2‐propanol/acetone support the thermodynamic control of the reaction. As a result, a general method to predict the degree of conversion obtained in the HT‐reduction process of a given ketone based on the IR absorption band of the carbonyl group is proposed, and a strategy to achieve the HT oxidation of halohydrins is also shown.     

Should the Woodward–Hoffmann Rules be Applied to Mechanochemical Reactions?

Since decades, pericyclic reactions have been well‐understood by means of the Woodward–Hoffmann rules and their classification as thermally or photochemically “allowed” or “forbidden”. Recently, stunning results on such reactions subject to mechanochemical activation by external forces instead of heat or light have revealed reaction pathways at sufficiently large forces, which are not expected from the Woodward–Hoffmann rules. This led to the much reiterated idea that the “Woodward–Hoffmann rules are broken in mechanochemistry”. Here, by studying ring‐opening of cyclopropane, we show that the electronic structure underlying the dis‐ and conrotatory pathways, which are greatly distorted upon applying forces to an extent that eventually the “thermally forbidden” process becomes “mechanochemically allowed”, does not change along both pathways. It is rather the mechanical work that lowers the activation barrier of the thermally forbidden conrotatory process relative to the disrotatory one at large forces.