Ultraviolet Spectroscopic Study of Cu2+ Induced DNA Melting at Room Temperature

Complexes of Calf thymus DNA with Cu²⁺ ions have been studied using ultraviolet (UV) absorption spectroscopy to probe the binding and melting behavior of DNA in the complex at 25°C, causing a melting of DNA as effectively as heating to 100°C. This strengthens the concept of Cu²⁺ binding to the DNA bases as recently demonstrated by Richard et al.¹     

Gas phase interaction of L‐proline with Be2+, Mg2+ and Ca2+ ions: a computational study

Geometry optimisation and metal ion affinities (MIAs) of the binding configurations of Be²⁺, Mg²⁺ and Ca²⁺ to L ‐proline were calculated using the hybrid Density Functional Theory (DFT‐B3LYP) and second order Møllet?Plesset perturbation theory (MP2) methods. Be²⁺ was found to bind preferentially in a charge transfer type arrangement through the carbonyl oxygen (? C?O) and the lone pair of the imino‐group nitrogen atom (? NH? ). On the contrary Mg²⁺ and Ca²⁺ were found to prefer binding in a bi‐dentate manner through the carboxylate group of L ‐proline (OCO) in a zwitterion form. The main types of interactions found to influence the binding preference of M²⁺ ions to L ‐proline were (i) charge transfer in the case of Be²⁺ ions and (ii) electrostatic interactions in the case of Mg²⁺ and Ca²⁺ ions. Inspection of the IR stretching of the N? H and the O? H groups of L ‐proline with M²⁺ ions in a chelating configuration (to both O and N atoms) indicated a considerable shift to higher frequency with decreasing MIA. On the other hand, the MIA for the zwitterion L ‐proline with M²⁺ tracks the reciprocal distance of the M²⁺? OCO bond further confirming that the nature of the bond is mainly electrostatic. Comparison with other molecules containing the carboxylic function is also included in order to gain more insight on the types of interaction of this amino acid with metal ions in general. Copyright © 2007 John Wiley & Sons, Ltd.     

Investigation of the Cu2+ and VO2+states in synthetic ion-exchange resins of varying sorts by E.P.R. method

The interaction of Cu²⁺ and VO²⁺ ions with high-molecular ligands of the sulpho, carboxyl, phosphor, amino and aminophosphorus resins were studied by E.P.R. The influence of an active resin group on the formation of the intra complex compounds with metal ions and, hence, on the sorption selectivity has been investigated; the influence of moisture content and temperature on the state of the paramagnetic ions in the resin has been studied. Inhomogeneous distribution of metal ions in the resin matrix which leads to the formation of both individual and exchange-coupled systems has been established. The influence of changes in polymer conformation on the stability of ion-exchange complexes is shown.

The data obtained from the E.P.R. spectra of Cu²⁺ and VO²⁺ complexes in a high polymeric matrix were compared with the corresponding monomeric systems having identical structures for the complex sites.     

A Selective Fluorescent Sensor for Hg2+

A novel rhodamine based fluorescent chemosensor RQP was prepared and characterized by ¹HNMR, ¹³CNMR and HR-MS. The properties of RQP were studied through UV–Vis spectroscopy and fluorescence spectroscopy. RQP showed highly selectivity toward Hg²⁺ over other metal ions, including Ag⁺, Cd²⁺, Cu²⁺, Na⁺, Mg²⁺, Ni²⁺, Pb²⁺, Fe³⁺, and Zn²⁺ in aqueous solutions. The recognition process is reversible and confirmed by EDTA experiment.     

Fluorescence Sensors for Selective Detection of Hg2+ Ion Using a Water-Soluble Poly(vinyl alcohol) Bearing Rhodamine B Moieties

The novel water-soluble poly(vinyl alcohol) with pendant rhodamine B moiety as colorimetric and fluorescene chemosensor for Hg²⁺ ions was prepared by grafting poly(vinyl alcohol) using rhodamine B hydrazide and hexamethylenediisocyanate as fluorescent dye and coupling agent, respectively. Because of their good water-solubility, the polymers binding rhodamine B can be used as chemosensors in aqueous media. With the addition of Hg²⁺ ions into the aqueous solution, visual color changes and fluorescence enhancements were detected. In addition, we also noticed that other metal ions such as Ag⁺, Cd²⁺, Co²⁺, Cu²⁺, K⁺, Mg²⁺, Ba²⁺, Fe²⁺, Ni²⁺, Pb²⁺, Cr³⁺, Fe³⁺ and Zn²⁺ cannot induce obvious changes to the fluorescence spectra of the polymer chemosensors. The combination of water solubility and positive fluorescence response as well as color change are hence particularly promising for the practical utility of the sensors.     

A New Fluorescent Chemosensor Detecting Co<Superscript>2+</Superscript> and K<Superscript>+</Superscript> in DMF Buffered Solution

A new fluorescent chemosensor 2-(2-thiophene)imidazo [4,5,f]-1,10-phenanthroline (L) was prepared and characterized. By adding univalent or divalent metal ions such as Na⁺, K⁺, Mg²⁺, Ba²⁺, Mn²⁺, Fe²⁺, Co²⁺, Ni²⁺, Cu²⁺, Ag⁺, Zn²⁺, Cd²⁺ and Hg²⁺ ions into the solution of L in DMF under buffered conditions with the working pH ranging from 7.0 to 8.0, we found that L could be used to detect K⁺ ratiometricly and it could also be applied to sense Co²⁺ with the phenomenon of fluorescence quenching of L. While the response behavior of L was not discernibly affected by other examined metal ions.     

Interaction studies of cysteine with Li+, Na+, K+, Be2+, Mg2+, and Ca2+ metal cation complexes

The coordination geometries, electronic features, metal ion affinities, entropies, and the energetics of Li⁺, Na⁺, K⁺, Be²⁺, Mg²⁺, and Ca²⁺ metal cations with different possible conformations of cysteine complexes were studied. The complexes were optimized using density functional theory (B3LYP) and second order Moller–Plesset Perturbation (MP2) theory methods using 6‐311 + +G** basis set. The interactions of the metal cations at different nucleophilic sites of cysteine conformations were considered after a careful selection among several binding sites. All the metal cations coordinate with cysteine in a tridentate manner and also the most preferred position for the interaction. It is found that, the overall structural parameters of cysteine are not altered by metal ion substitution, but, the metal ion‐binding site has undergone a noticeable change. All the complexes were characterized by an electrostatic interaction between ligand and metal ions that appears slightly more pronounced for lithium and beryllium metal complexes. The metal ion affinity (MIA) and basis set superposition error (BSSE) corrected interaction energy were also computed for all the complexes. The effect of metal cations on the infrared (IR) stretching vibrational modes of amino N? H bond, side chain thiol group S? H bond, hydroxyl O? H bond, and Carbonyl C?O bond in cysteine molecules have also been studied. The nature of the metal ion‐ligand bond and the coordination properties were examined using natural bond order (NBO) at bond critical point (electron density and their Laplacian of electron density) through Atoms in Molecules (AIM) analyses. Copyright © 2010 John Wiley & Sons, Ltd.     

Metal ion interaction with ribosomal RNA

Summary We have used UV differential spectroscopy in order to detect small modifications in the ribosomal RNA absorption spectrum due to the binding of rRNA molecules with the metal ions Na⁺, K⁺, Mg²⁺, Ca²⁺, Mn²⁺, Co²⁺ and Ni²⁺. Our data show that all the ions, investigated are involved in ion-type bond with the phosphate groups of rRNA and cause a refolding of the molecules with an overall increase in basebase ?stacking? interactions. Besides this ion-type binding with phosphate groups, transition metal ions Mn²⁺, Co²⁺, and Ni²⁺ are also able to bond directly to the bases To speed up publication, the authors of this paper have agreed to not receive the proofs for correction.     

Gas-phase reactivity of lactones: structure and stability of their Cu+ complexes

The structure and relative stability of different lactone-Cu⁺ complexes, including cycles changing from four to six-membered rings, have been investigated through the use of density functional theory methods. The geometries and vibrational frequencies were calculated at the B3LYP/6-311G(d,p) level. Final energies were obtained in single point calculations carried out at the B3LYP/6-311+G(2df,2p) level of theory. Upon interaction with Cu⁺ in the gas phase, lactones behave in a rather similar way as they do in protonation processes. Systematically the global minimum of the potential energy surface corresponds to the attachment of the metal cation to the carbonyl oxygen cis with respect to the ether-like oxygen. Also, similarly to proton affinities, the calculated Cu⁺ binding energies increase with the size of the system. The unsaturated compounds are found to be only slightly more basic than the saturated counterparts. Cu⁺ attachment leads to significant bond activation and bond reinforcement effects, reflected in redshiftings and blueshiftings of the stretching frequencies, respectively. Cu⁺ is able to form agostic bonds with some of the CH² groups of the lactone moiety. These agostic complexes can be good precursors for the unimolecular loss of H², which very likely should be observed in the mass spectra.     

The effect of the next nearest neighbor ion on the X-ray photoelectron spectra of 2p levels for Co2+, Ni2+ and Cu2+ in MgO

The X-ray photoelectron spectra of Co, Ni and Cu 2p levels for samples of M_xMg_1-xO (M = Co, Ni, Cu), CoO, NiO and CuO were compared. The binding energies of metal 2p_{$\text{3}\text{2}$} levels did not change with their concentration. The shake-up satellite main peak intensity ratios and FWHM of metal 2p levels for Co²⁺ and Cu²⁺ in MgO were smaller than those for CoO and CuO. The Ni 2p_{$\text{3}\text{2}$} spectrum for Ni²⁺ in MgO had no shoulder, unlike NiO. Results indicate that next nearest neighbor ions (metal ions) may influence the final states after photoelectron ejection.     

Insights into copper coordination in the EcoRI–DNA complex by ESR spectroscopy

The EcoRI restriction endonuclease requires one divalent metal ion in each of two symmetrical and identical catalytic sites to catalyse double-strand DNA cleavage. Recently, we showed that Cu²⁺ binds outside the catalytic sites to a pair of new sites at H114 in each sub-unit, and inhibits Mg²⁺-catalysed DNA cleavage. In order to provide more detailed structural information on this new metal ion binding site, we performed W-band (～94 GHz) and X-band (～9.5 GHz) electron spin resonance spectroscopic measurements on the EcoRI–DNA–(Cu²⁺)₂ complex. Cu²⁺ binding results in two distinct components with different g_zz and A_zz values. X-band electron spin echo envelope modulation results indicate that both components arise from a Cu²⁺ coordinated to histidine. This observation is further confirmed by the hyperfine sub-level correlation results. W-band electron nuclear double resonance spectra provide evidence for equatorial coordination of water molecules to the Cu²⁺ ions.     

Local coordination geometry around Cu and Cu ions in silicate glasses: an X-ray absorption near edge structure investigation

We present an X-ray absorption near edge structure (XANES) study on Cu⁺ and Cu²⁺ ions in silicate glasses at the Cu K-edge, aimed to determine the geometry of the local structure around the metal. This study is based on the comparison between experimental data and theoretical calculations made in the framework of multiple scattering theory. The XANES signals relative to several clusters are simulated on the basis of known crystalline structures involving Cu⁺ and Cu²⁺ ions in silicate matrices. Concerning the Cu²⁺ in glass, the simulations suggest the presence of a square coordination of oxygen atoms around the absorber, with a possible presence of metal ions in the second shell. As for the Cu⁺ ions, the metal clustering is excluded and a linear O-Cu-O coordination is evidenced. Received 30 April 1999     

Methylene blue as a DNA probe for a comparative study of Cd, Pb and Cr ions binding to calf thymus DNA

Methylene blue (MB) was developed as a sensitive DNA probe for a comparative study of Cd²⁺, Pb²⁺ and Cr³⁺ ions binding with calf thymus DNA (ctDNA). The fluorescence intensity of the MB-ctDNA system increased dramatically when heavy metal ions (Cd²⁺, Pb²⁺ and Cr³⁺ ions) were added, which indicated that some of the bound MB molecules were released from the ctDNA base pairs. To compare the binding affinity of these three different heavy metal ions with ctDNA, the relationships between the fluorescence intensity of the MB-ctDNA-M (Metal ions) system and the concentration ratio of [M]/[DNA(p)] were investigated. The results showed that the order of the binding affinity of heavy metal ions with ctDNA had the following sequence: Cr³⁺> Cd²⁺>Pb²⁺. This order was further proved by the effects of heavy metal ions on the number of MB bound to ctDNA, the measurements of binding constants of these heavy metal ions to ctDNA, and the effects of heavy metal ions on the absorption of the MB-ctDNA system. In addition, the interaction mechanisms of Cd²⁺, Pb²⁺ and Cr³⁺ ions with ctDNA were also discussed in detail. These results indicated that their interaction mechanisms are related to the concentration ratios of heavy metal ions to DNA.     

Interaction between 1-[p-(dimethylamino) benzoyl]-4′-phenyl-semicarbazide and Cu

A new compound, 1-[p-(dimethylamino)benzoyl]-4′-phenyl-semicarbazide (1) was synthesized and showed highly selective response to Cu²⁺ over other metal ions such as Pb²⁺, Mg²⁺, Fe²⁺, Co²⁺, Zn²⁺, Cd²⁺, Hg²⁺, Ni²⁺, Ca²⁺, Ag⁺, Na⁺, K⁺, and Li⁺. The control compound, 1-[p-(dimethylamino)benzoyl]-4-phenyl-thiosemicarbazide (2), showed different fluorescence spectral response to Cu²⁺. A 1:1 complex between Cu²⁺ and 1 was formed while 1:1 and 1:2 complexes between Cu²⁺ and 2 were formed. The binding model between the receptor (1 or 2) and Cu²⁺ was supported by IR spectra, mass spectra, and computation model. 1 possessed higher selectivity towards Cu²⁺ compared with 2 owing to the difference of complexation ability between urea and thiourea groups.     

Spectrophotometric studies on the interaction between myricetin and lysozyme in the absence or presence of Cuor Fe

The binding of myricetin to lysozyme (Lys) in aqueous solution was investigated by fluorescence spectroscopy, ultraviolet-visible absorption spectroscopy (UV) and circular dichroism (CD) spectra under physiological conditions. There are also many metal ions present in body, thus the research about the effect of metal ions on the interaction of drugs with proteins is crucial. In this study, we have investigated the effect of both familiar metal ions Cu²⁺ and Fe³⁺ on the interaction between myricetin and Lys by using spectroscopy technique at pH 7.40, for the first time. Spectrophotometric observations are rationalized in terms of a static quenching process in a static quenching way. The cause of showing upward curvy patterns in Stern-Volmer plots was analyzed. The binding constants and binding sites of myricetin with Lys with or without Cu²⁺ and Fe³⁺ at different concentrations of myricetin were calculated. UV/vis measurements on the enzymatic activity of Lys with or without Cu²⁺ in the absence or presence of myricetin indicated that the interaction between myricetin and Lys led to a reduction in the activity of Lys. Furthermore, the effect of pH on the binding constant of myricetin with Lys was also examined.     

8-Hydroxyquinoline Functionalized Graphene Oxide: an Efficient Fluorescent Nanosensor for Zn<Superscript>2+</Superscript> in Aqueous Media

A nanosensor, based on 8-hydroxyquinoline functionalized graphene oxide, was developed for the fluorescence detection of Zn²⁺. It showed high selectivity and sensitivity for Zn²⁺ion in aqueous solution over other metal ions such as Li⁺, Na⁺, Ca²⁺, Mg²⁺, Al³⁺, Cd²⁺, Co²⁺, Cu²⁺, Hg²⁺, Ni²⁺, Pb²⁺, Fe²⁺, Fe³⁺and Cr³⁺. Due to the linearity of the emission intensity toward Zn²⁺ concentration, fluorescent technique could be used for the detection of Zn²⁺ ion even at very low concentrations.     

Condensation Product of Phenylalanine and Salicylaldehyde: Fluorescent Sensor for Zn<Superscript>2+</Superscript>

The condensation product of phenylalanine and salicylaldehyde (L) was synthesised and characterised which was found to be selective fluorescent “off-on” sensor for Zn²⁺ ion with the detection limit 10^?5 M. The sensor is free of interferences from metal ions - Na⁺, K⁺, Al³⁺, Mn²⁺, Co²⁺, Ni²⁺, Cu²⁺, Pb²⁺, Cd²⁺ and Hg²⁺. The Fluorescence and the UV/visible spectral data reveals a 1:1 interaction between the sensor and Zn²⁺ ion with binding constant 10⁸. The DFT and TDDFT calculations confirm the structures of the sensor and the sensor-Zn²⁺ complex.     

Determination of the Association Constants of Macrocyclic Ethers by the Aid of 13C Dipole-dipole Relaxation Time Measurements. I.,: Li+, Mg2+ and Ca2+ complexes of 1,4,7,10-tetraoxacyclododecane

Abstract

The association constants of Li⁺, Ca⁺² and Mg⁺² ions complexing with 1, 4, 7, 10-tetraoxcyclododecane in DHO were determined by the aid of ¹³C dipole-dipole relaxation time measurements. To obtain the K_a, association constant, the T^O ₁ values of the stoichiometric complex solutions and the T₁₀ of the free molecules were applied to the equation derived, 1/K_a· A_o + 2 = 1/P + P, for the 1:1 ratio of the complexing and to the equation 1/2K_a·A_o + 3/2 = P + 1/2P for the 1:2 ratio of the complexing where P, is molar ratio of the crown complexed ions.

Accordingly we found that the binding ability of the macrocyclic ether towards to the cations is in the following order of Li⁺ < Mg⁺² ? Ca⁺² in DHO solutions.     

A Pyrene-based Highly Selective Turn-on Fluorescent Sensor for Copper(II) Ion and its Application in Live Cell Imaging

A new pyrene derivative (chemosensor 1) containing a picolinohydrazide moiety exhibits high selectivity for Cu²⁺ ion detection in mixed aqueous media (CH₃OH:H₂O = 7:3). Significant fluorescence enhancement was observed with chemosensor 1 in the presence of Cu²⁺. However, the metal ions Ag⁺, Ca²⁺, Cd²⁺, Co²⁺, Cu²⁺, Fe²⁺, Fe³⁺, Hg²⁺, K⁺, Mg²⁺, Mn²⁺, Ni²⁺, Pb²⁺, and Zn²⁺ produced only minor changes in fluorescence for the system. The apparent association constant (K _a) of Cu²⁺ binding in chemosensor 1 was found to be 2.75*10³ M⁻¹. The maximum fluorescence enhancement caused by Cu²⁺ binding in chemosensor 1 was observed over the pH range 5–8. Moreover, by means of fluorescence microscopy experiments, it is demonstrated that 1 can be used as a fluorescent probe for detecting Cu²⁺ in living cells.     

A Novel Ratiometric Fluorescent Chemosensor for Cd2+

Novel ratiometric fluorescent chemosensor C7 was synthesized and characterized by UV–vis and fluorescence spectroscopy. C7 showed high sensitivity for Cd²⁺ among Na⁺, Mg²⁺, Cu²⁺, Pb²⁺, Ni²⁺, Fe³⁺, Zn²⁺, Ag⁺ Hg²⁺ and Cd²⁺ in ethanol.