To the problem of the reaction mechanism of 2-methoxybenzo[d]-1,3,2-dioxaphosphorin-4-one with chloral on the basis of quantum-chemical calculations: II. The perkov reaction

The Perkov reaction mechanism on an example of 2-methoxybenzo[d]-1,3,2-dioxaphosphorin-4-one reaction with chloral was investigated by means of quantumchemical calculations [PM3, DFT (PBE functional, “Triple z” basis, “Priroda” program)]. The primary reaction step is shown to include [1+2]-cycloaddition to form an intermediate with pentacoordinated phosphorus atom (oxaphosphirane-containing spirophosphorane) which transforms further to vinyl phosphate. Structure of the transition state on the pathway to vinyl phosphate is close to dichlorovinyloxyquasiphosphonium cation with the chloride counterion. Thermodynamic parameters of the starting compounds and reaction products as well as activation energies of the processes are evaluated.     

Preparation and crystal structure of 1,1-tetramethylethylenedioxy-3,4-diphenyl-6-trichloromethyl-2,5,7,1-trioxaphosphabicyclo[2.2.1<Superscript>1,4</Superscript>]heptane and 2-(1-hydroxy-2,2,2-trichloroethoxy)-4,4,5,5-tetramethyl- 2-oxo-1,3,2-dioxaphospholane

The state of the art of chloral applications in the chemistry of tricoordinate phosphorus derivatives has been analyzed. The highly stereoselective reaction of 4,4,5,5-tetramethyl-2-(2-oxo-1,2-diphenylethoxy)-1,3,2-dioxaphospholane with chloral has been shown to afford a caged phosphorane with the phosphorus–carbon bond, 1,1-tetramethylethylenedioxy-3,4-diphenyl-6-trichloromethyl-2,5,7,1-trioxaphosphabicyclo- [2.2.1^1,4]heptane. Structure of the phosphorane and its hydrolysis product, 2-(1-hydroxy-2,2,2-trichloroethoxy)- 4,4,5,5-tetramethyl-2-oxo-1,3,2-dioxaphospholane, has been elucidated by X-ray diffraction analysis.     

Formation of unsymmetrical 1,4-dithiins from fused 1,2,3,4,5-pentathiepins: synthesis,structural, and computational study

Pentathiepinopyrroles reacted with methyl propiolate and triphenylphosphine to give regioselectively dithiinopyrroles in agreement with the electron distribution in the proposed reaction intermediate. Thieno[2,3-f][1,2,3,4,5]pentathiepin when treated with methyl propiolate and triphenylphosphine gave a pair of regioisomers where the higher yielding regioisomer contained the same mode of junction as in the case of pentathiepinopyrroles. X-ray crystal structures are provided for the thieno[2,3-b][1,4]dithiine carboxylate isomers. Quantum-chemical calculations B3LYP/6-31G(d) and B3LYP/6-311⁺⁺G(d,p) have been carried out for better understanding of the reaction mechanisms; the index of synchronism of the S_h addition and the index of a relative difference in bond orders in transition states are in good agreement with the formation of the regioisomers by the reaction of unsymmetrical pentathiepins with alkynes containing one electron-withdrawing group.     

Camphor-based α-bromoketones for the asymmetric darzens reaction: Insights into the mechanism using density functional theory

Density functional theory (DFT) calculations at B3LYP/6-31G(d,p) level were carried out to investigate the mechanism of the reaction of benzaldehyde (BA) or acetaldehyde (AD) with (1R)-2-endo-bromoacetyl-1,7,7-trimethylbicyclo[2.2.1]heptan-2-ol (endo-2-bromoacetylisoborneol) 1 (Scheme 1). The calculations indicate that the reactions are diastereoselective, in good agreement with the experimental results [1]. Moreover, the calculations show that these reactions proceed via two steps: (1) an aldol-like reaction and (2) the formation of an epoxide. Our calculation study of the transition states demonstrates that the terminal hydroxyl group in compound 1 is vital for the stereoselectivity of the reactions.     

Nucleophilic Substitution at Tetracoordinate Phosphorus. Stereochemical Course and Mechanisms of Nucleophilic Displacement Reactions at Phosphorus in Diastereomeric cis- and trans-2-Halogeno-4-methyl-1,3,2-dioxaphosphorinan-2-thiones: Experimental and DFT Studies

Geometrical cis- and trans- isomers of 2-chloro-, 2-bromo- and 2-fluoro-4-methyl-1,3,2-dioxaphosphorinan-2-thiones were obtained in a diastereoselective way by (a) sulfurization of corresponding cyclic P^III-halogenides, (b) reaction of cyclic phosphorothioic acids with phosphorus pentachloride and (c) halogen–halogen exchange at P^IV-halogenide. Their conformation and configuration at the C₄-ring carbon and phosphorus stereocentres were studied by NMR (¹H, ³¹P) methods, X-ray analysis and density functional (DFT) calculations. The stereochemistry of displacement reactions (alkaline hydrolysis, methanolysis, aminolysis) at phosphorus and its mechanism were shown to depend on the nature of halogen. Cyclic cis- and trans-isomers of chlorides and bromides react with nucleophiles (HO⁻, CH₃O⁻, Me₂NH) with inversion of configuration at phosphorus. DFT calculations provided evidence that alkaline hydrolysis of cyclic thiophosphoryl chlorides proceeds according to the S_N2-P mechanism with a single transition state according to the potential energy surface (PES) observed. The alkaline hydrolysis reaction of cis- and trans-fluorides afforded the same mixture of the corresponding cyclic thiophosphoric acids with the thermodynamically more stable major product. Similar DFT calculations revealed that substitution at phosphorus in fluorides proceeds stepwise according to the A–E mechanism with formation of a pentacoordinate intermediate since a PES with two transition states was observed.     

Ab initio studies of the allylic hydroxylation: DFT calculation on the reaction of 2-methyl-2-butene with selenium dioxide

The mechanism of the allylic oxidation of 2-methyl-2-butene with selenium dioxide has been investigated by ab initio quantum mechanics. Transition states for two major steps (an ene reaction and a [2,3]-sigmatropic rearrangement) of this reaction have been optimized by the B3LYP/6-311+G(d,p) method. A comparison of the energies of the transition states shows that the anti-endo and syn-endo approaches are the efficient routes in the ene reaction and the methyl (C4) group is sited in a pseudo-equatorial environment in cyclic transition states during the [2,3]-rearrangement. Calculations also show the kind of the terminal alkyl (C4) substituents may control (E)-selectivity in the formation of the allylic alcohols.     

The adenine ring influences the adenosine 5′-triphosphate hydrolysis

DFT calculations (ωB97X-D) of the adenosine 5′-triphosphate (ATP) hydrolysis were carried out. Four reactions (A), (B), (C), and (D) were investigated. Reaction (A) is of the acid catalysis and (B) is of the Mg²⁺ one with (H₂O) _n, n = 5, 11, and 17. (C) is of the myosin-model catalysis, and (D) is of the F₁-ATPase one. Transition states were determined precisely. For reaction (A), the experimental activation energy was reproduced well by the n = 11 and 17 models. For the Mg²⁺-containing hydrolysis, (B), 2 reactions (a) [without the Mg²⁺-adenine linkage] and (b) [with the connection] were examined and were compared. The reaction (b) was found to be more likely than (a) in both total and activation energies. The adenine ring works to enhance the polarity of transition states. For the myosin catalyzed (C) and in F₁-ATPase (D) hydrolyses, again, the reaction (b) is much more likely than (a). The proton transfer from the lytic water molecule leads to the protonation of the carboxylate of Glu459 in (C). The adenine ring was suggested to influence and promote the ATP hydrolysis.     

Ab initio and density functional studies of cooperative hydrogen bonding in calix[4]-and calix[6]arenes

The cone conformation of C ₄ symmetry is shown by the Hartree-Fock method (3-21G basis) to be the predominant conformer of calix[4]arene; the compressed cone of C ₂ symmetry is the major conformer of calix[6]arene. Using quantum chemical methods we calculated hydrogen bond cleavage energies for calix[4]-(ab initio and density functional methods) and calix[6]arene (ab initio), and also for the complex of calix[4]arene with carbon disulfide. These energies along with structural data point to the cooperative effect of hydrogen bonds. The results of these studies provided an explanation to the greater conformational lability of calix[6]arene compared with calix[4]arene molecules. It is also predicted that the nucleophilic substitution reaction involving calix[6]arene in the presence of weak bases and in aprotic solvents, as well as in the gas phase, will occur via diastereomeric transition states.     

激发态Ti＋(3d14s2)与丙炔醇气相反应理论研究

用量子化学密度泛函(DFT)方法研究了激发态Ti^＋(3d¹4s²)与丙炔醇(PPA)气相反应的机理. 在B3LYP/DZVP水平上, 优化了反应的两个通道的反应物、中间体、过渡态和产物的几何构型, 并在MP4/[6-311＋G**(C,H,O)＋Lanl2dz (Ti)]水平上计算了各驻点的单点能量. 为了确证过渡态的真实性, 在B3LYP/DZVP水平上进行了内禀坐标(IRC)计算和频率分析, 获得了二重态反应势能面, 确定了反应机理. 研究结果表明生成产物为[C₃H₃O]^＋和Ti—H的通道是主要反应途径.     

Kinetics and mechanism of oxidation of 2-Aminoethanol and 3-Amino-1-propanol by diperiodatoargentate(III) in alkaline medium

The kinetics of oxidation of 2-aminoethanol and 3-amino-1-propanol by diperiodatoargentate(III) (DPA) were carried out spectrophotometrically in alkaline medium in the temperature range of 293.2-308.2 K. The reaction showed first order with respect to [DPA] and each reductant. The observed rate constant (k _obs) decreased with the increase of [IO₄ ^-] and increased with the increase of [OH^-]. Increasing ionic strength of the medium decreased the rate. Investigations of the reaction at different temperatures allowed the determination of the activation parameters for the slow step of proposed mechanism. The proposed mechanism and the derived rate laws found consistent with the observed kinetics.     

Diastereo- and regioselectivity in Diels-Alder reaction of [1,4,2]diazaphospholo[4,5-a]pyridines

[1,4,2]Diazaphospholo[4,5-a]pyridines undergo diastereoselective Diels-Alder reaction at the >CP- functionality with 2,3-dimethylbutadiene and isoprene in the presence of sulfur or selenium. The reaction with isoprene occurs regioselectively. On carrying out the reaction with diene in presence of methyl iodide, the initially formed [2+4] cycloadduct is methylated regioselectively at the σ²,λ³-nitrogen. The results of the DFT calculations of the Diels-Alder reaction with isoprene are in accord with the observed regioselectivity. The relative stabilities of the two transition structures have been explained on the basis of NBO analysis.     

Structures of the phosphinidene germylenoid HP=GeLiF and its cycloaddition reaction with ethylene

The structures of phosphinidene germylenoid HP=GeLiF were studied for the first time by using DFT (density functional theory) calculations. The geometries were optimized at the B3LYP/6-311+G (d, p) level at first and then the single-point energies were calculated at QCISD/6-311++G (d, p) level. Theoretical calculations predicted that HP=GeLiF has two equilibrium structures, the p-complex (1) and the three-membered-ring (2) structures, in which structure 1 has the lower energy and is more stable than 2. To exploit the reactivity of HP=GeLiF, the cycloaddition reaction of 1 and ethylene was investigated at the same level of theory. From the potential energy profile, we predicted that the cycloaddition reaction has one dominant reaction pathway. The calculated result shows that the dominant reaction pathway is a [2?+?2] cycloaddition reaction which is the interaction of two π bonds in HP=GeLiF and ethylene molecule, and a four-membered-ring P-heterocyclic germylene is formed. Since sp³ hybridization of Ge atom in this four-membered-ring germylene, it may further react with another ethylene and finally forming a spiro-Ge-heterocyclic compound involving phosphorus. This means that this reaction involves a [2?+?2] cycloaddition as the initial step, and then a [2?+?1] cycloaddition carried out.     

气相中CrO2+活化甲烷C—H键的理论研究

用密度泛函UB3LYP/6-311＋＋G**方法计算研究了气相中CrO₂⁺ (²A₁/⁴A")活化甲烷C—H键的微观机理, 找到了四条反应通道. 对其中涉及的两态反应(TSR)进行了分析, 并对影响反应机理和反应速率的势能面交叉现象(potential energy surfaces crossing)进行了详细讨论, 进而运用Hammond假设和Yoshizawa等的内禀坐标单点垂直激发计算的方法找出了一系列势能面交叉点[crossing points (CPs)], 并作了相应的讨论. 进一步用碎片分子轨道理论[fragment molecular orbital (FMO)]对TS1中的轨道相互作用进行了分析, 解释了CrO₂⁺活化甲烷C—H键的机理.     

Nucleophilic substitution of (sulfonyloxymethyl)aziridines: an asymmetric synthesis of both isomers of mexiletine

The nucleophilic substitution reactions of 1-[1′(R)-α-methylbenzyl]-(2R)- and (2S)-(sulfonyloxymethyl)aziridines were carried out with various nucleophiles including N₃⁻, MeO⁻, CN⁻, SCN⁻, and diarylcuprates. The reaction pathway is influenced by the stereochemistry of the substrates, nucleophiles, and also the structure of the leaving groups. When the reaction site is less sterically hindered for the reactive nucleophiles to approach to the substrate 1-[1′(R)-α-methylbenzyl]-(2S)-(p-toluenesulfonyloxymethyl)aziridines, product is obtained as a single isomer while all the other starting materials afford a mixture of two isomers from two different reaction pathways. Application of this method enabled us to prepare both isomers of orally effective antiarrhythmic agent mexiletine.     

Asymmetric reduction of aromatic ketones in pyridinium-based ionic liquids

The asymmetric reduction of aromatic ketones has been studied in pyridinium-based room temperature ionic liquids, namely, 1-ethyl-pyridinium tetrafluoroborate, [EtPy]⁺[BF₄]⁻ and 1-ethyl-pyridinium trifluoroacetate, [EtPy]⁺[CF₃COO]⁻. Ionic liquids were employed as solvents, while (R)-BINOL and (R)-BINOL-Br were used as chiral promoters. The effects of solvent, reaction time, temperature, catalyst loading and substituents were investigated. The reduction could be easily carried out in both ionic liquids with lower catalyst loading. 1-Ethyl-pyridinium tetrafluoroborate was recycled and reused efficiently.     

Origin of the stereo- and regioselectivities in the Diels-Alder reactions of azaphospholes: a DFT investigation

Computations of the Diels-Alder (DA) reactions of azaphosphole representative namely, thiazolo[3,2-d][1,4,2]diazaphosphole with 1,3-butadiene and isoprene at the density functional theory level reveal concerted mechanisms via asynchronous transition states. The activation energies (B3LYP/6-311++G**// B3LYP/6-311G**), 16-19 kcal mol⁻¹, are much smaller than the value (32.57 kcal mol⁻¹) calculated for the DA reaction of the non-phosphorus analogue, imidazo[2,1-b]thiazole with 1,3-butadiene. An electron-withdrawing group at the 3-position of the dienophile enhances both stereo- and regioselectivities, which agree nicely with the experimental values. Inclusion of solvent effect (PCM model) reveals that the stereo- and regioselectivities are not affected appreciably. The relative stabilities of the transition structures corresponding to the endo/exo stereoisomers and meta (P/Me, 1:3)/para (P/Me, 1:4) regioisomers have been rationalized on the basis of the secondary molecular orbital interactions.     

Identification of a four-center intermediate in a Grignard addition reaction to a P-S bond

The reaction between tert-butylmagnesium chloride (or tert-pentylmagnesium chloride) and the particular phosphorus-sulfur bond of a benzothiadiphospholic system showed, for the first time, evidence of formation of intermediates with a four-center structure. The possibility, for the phosphorus atom, to have very stable hypervalent coordinations makes it possible to observe its hypervalent states during the course of a reaction. The benzothiadiphosphole, with its bicyclic folded structure, further stabilizes the hypervalent coordinations thus making the intermediates sufficiently stable to be detected during the course of the reaction by ³¹P NMR spectroscopy, which revealed the nature and the stability of the species involved in this reaction, carried out also using other Grignard reagents.     

Dianionic amidinates at silicon and germanium centers: Four-, six- and eight-membered rings

At variance to an earlier finding, the reaction of Me₂SiCl₂ with Li[(Me)N-C(Ph)-NH] (1a), in the presence of a base, gives a six-membered ring molecule μ-[(Ph)(MeN)C-N][-SiMe₂-N-C(Ph)-N(Ph)-SiMe₂-] (s3a), whereas with Li[ⁱPrN-C(Ph)-NH] (1b), a four-membered ring molecule μ-[ⁱPrN(Ph)C-N]₂(SiMe₂)₂ (s4b) was formed. In contrast, with Li[^tBuN-C(Ph)-NH] (1c), no such reaction occurred. Obviously, a delicate influence of steric effects has to be taken into account. In fact, the latter amidinate reacts with GeCl₂ to form an eight-membered ring molecule [^tBuN-C(Ph)-N-Ge]₄ (5c) without adding an additional base.The compounds are fully characterized and their structures determined by X-ray diffraction. DFT calculations confirm the dependence on steric influences. The relative energies of ground and transition states give a rationalization the ease of transformations of the various rings via pathways with penta- and hexacoordinate silicon centers, which in turn relates to the experimental results on penta- and hexacoordinate silicon amidinates and their fluctional behavior in solution.     

Selective construction of indeno[1,2-b]phenothiazine and indeno[2,1-c]phenothiazine via tandem annulation reaction

AcOH promoted annulation reaction of 2-arylideneindane-1,3-diones with methyl 2-(benzo[b][1,4]thiazin-3-ylidene)acetate in refluxing ethanol afforded pentacyclic tetrahydroindeno [1,2-b]phenothiazine in satisfactory yields and with high diastereoselectivity according to the unexpected tandem annulation process. When the above reaction was carried out in refluxing acetic acid, isomeric dihydroindeno [1,2-b]phenothiazines and dihydroindeno [2,1-c]phenothiazines were obtained in comparable yields according to alternate tandem annulation process.