PCl3水解反应机理的理论研究

用密度泛函理论对PCl3水解反应机理进行了研究.优化了反应物、产物、中间体及过渡态的几何构型,通过频率计算和内禀反应坐标分析对过渡态结构及连接性进行了验证,对反应物、产物、中间体及过渡态的总能量进行了零点能校正,得到了各步水解反应的活化能.研究表明,PCl3同时发生亲电和亲核水解反应机理更易进行.     

CH_3SH+CN微观反应机理的理论研究

采用BMC-CCSD//B3LYP/6-311G(d,p)方法对CH3SH+CN反应机理进行了详细的理论研究.反应中涉及的各稳定点的构型、振动频率和零点能在B3LYP/6-311G(d,p)水平下计算得到,计算结果表明,该反应存在两种反应机理,5条可能的反应通道.SN2机理由于能垒太高,与直接氢抽提机理相比可以忽略.该反应的最可行通道为CN中的C原子进攻SH中的H原子经由一个前期和一个后期分子络合物生成产物CH3S和HCN.计算得到的反应焓变与已有实验值非常吻合.     

HCN消除反应机理的理论研究

采用密度泛函理论方法从HCN氧化和水解两个方面研究了HCN消除反应机理,并考虑了HCN的直接消除反应(途径Ⅰ和途径Ⅱ)和CuO上的HCN消除反应(途径Ⅲ和途径Ⅳ)。途径Ⅰ为HCN与2个O2分子生成CO2、NO和H原子;途径Ⅱ为HCN与1个O2分子和1个H2O分子生成 CO2和NH3;途径Ⅲ为CuO上HNCO水解为CO2和NH3;途径Ⅳ为CuO上HCN水解为CO和NH3。研究发现,途径III速控步骤的活化自由能垒为157.32 kJ/mol,比途径Ⅱ中HNCO水解降低12.34 kJ/mol;比途径Ⅳ降低了63.8 kJ/mol。可见,HNCO是HCN净化过程中的重要中间体,CuO的加入降低了反应能垒,促进了HCN消除。     

C_2H_3·与NO反应机理的理论研究

采用密度泛函B3LYP/6-311G**和高级电子相关耦合簇CCSD(T)/6-311G**方法计算研究了C2H3·与NO反应的机理,全参数优化了反应势能面上各物种的几何构型,用内禀反应坐标(IRC)计算和频率分析方法,对过渡态进行了验证.研究结果表明,C2H3·与NO是一多通道多步骤的反应,经过缔合、氢转移和离解等复杂过程,最终得到5种产物(P1～P5).     

烯丙醇与臭氧反应机理的密度泛函理论研究

应用密度泛函理论的MPW1K,BHandHLYP和MPWB1K方法,结合6-31+G(d,p)基组优化了烯丙醇与臭氧反应势能面上各驻点的几何构型,通过同一水平的振动频率分析确认了中间体和过渡态.反应路径上的驻点都在HL理论水平下进行单点能量校正,并进行了MPW1K/6-31+G(d,p)水平下的零点振动能校正(ZPE).对反应机理的详尽分析表明臭氧抽取烯丙醇羟基基团中H的通道的反应势垒比臭氧加合烯丙醇双键基团通道的反应势垒高,臭氧与烯丙醇双键加合生成臭氧化物为最可几反应路径.在加合反应历程中,氢迁移通道需经过氢迁移和离解等复杂过程,最终要产生少量的OH自由基,与烃烯类臭氧化反应产生大量OH自由基的结果相反.     

过氧亚硝酸与苯酚的反应机理理论研究

采用量子化学密度泛函理论(DFT)研究了过氧亚硝酸分解产生的自由基(•OH和•NO2)与苯酚的反应机理. 在B3LYP/6-311++G(d, p)//B3LYP/6-311G(d, p)水平上对该反应体系的反应物、中间体、过渡态及产物进行了几何构型优化并计算了振动频率和能量. 计算结果表明, 过氧亚硝酸与苯酚的反应生成两种主要产物, 分别为邻羟基苯酚和对羟基苯酚, 这一结论与实验结果一致. 此外在同一计算水平上采用SCRF(PCM)方法计算了溶剂化效应, 结果表明, 极性溶剂可以降低各反应通道的活化能, 有利于反应的进行.     

丙三醇脱水反应机理的密度泛函理论研究

为了理解纤维素热解初期的脱水反应机理, 采用Gaussian 03程序中的密度泛函理论UB3LYP/6-31＋＋G(d,p) 方法, 对模型化合物丙三醇脱水反应机理进行了量子化学理论研究. 设计了6种可能的脱水反应途径, 对各种反应的反应物、产物和过渡态的结构进行了能量梯度全优化, 计算了不同温度下各反应途径的标准热力学和动力学参数. 计算结果表明: 除了形成中间体IM_a和IM_b的反应外, 其它反应均为吸热反应; 温度高于400 K时, 丙三醇开始发生脱水反应; 与1-2-脱水反应相比, 1-3-脱水反应的反应势垒更低, 其活化能为233.75 kJ/mol; 当反应加入金属离子Li^＋时, 有利于脱水反应的发生, 这时1-2-脱水反应的活化能为201.95 kJ/mol, 1-3-脱水反应的活化能为202.14 kJ/mol.     

理论研究连接方式对低聚(3-己基噻吩)结构和电子光谱的影响

用密度泛函理论优化了不同连接方式的低聚(3-己基噻吩)((3HT)n,n=2~8)异构体的几何结构,并得到了相对能量,接着用含时密度泛函理论计算了不同异构体的垂直激发能,并优化了(3HT)8第一激发态的几何结构.结果表明,不同连接方式异构体的相对能量接近,但它们的轨道能级和垂直激发能差异都较大;第一激发态比基态共平面性更好.     

OClO与OH反应机理的理论研究

用密度泛函B3LYP/-311+G~(* *)和级电子相关倒映 合簇CCSD(T)/6-311+G~(* *)方法研究了OClO与OH反应的微观机理，研究结果表明：该反应经过缔合、H转移 和离解等复杂过程，最终得到四种产物，分别为HOCl+O_2，HCl+O_3,ClO+HO_2和 HOClO_2,从能量上看，形成HOCl+O_2和HCl+O_3的通道更容易进行，而形成 ClO+HO_2的通首在动力学上是最不利的。     

Direct Acyl Substitution of Carboxylic Acids: A Chemoselective O‐ to N‐Acyl Migration in the Traceless Staudinger Ligation

A chlorophosphite‐modified, Staudinger‐like acylation of azides involving a highly chemoselective, direct nucleophilic acyl substitution of carboxylic acids is described. The reaction provides the corresponding amides with analytical purity in 32–97 % yield after a simple aqueous workup without the need for a pre‐activation step. The use of chlorophosphites as dual carboxylic acid–azide activating agents enables the formation of acyl C? N bonds in the presence of a wide range of nucleophilic and electrophilic functional groups, including amines, alcohols, amides, aldehydes, and ketones. The coupling of carboxylic acids and azides for the formation of alkyl amides, sulfonyl amides, lactams, and dipeptides is described.     

Theoretical study on formation of thioesters via O-to-S acyl transfer

Peptide thioester preparation via intramolecular O-to-S acyl transfer is a recently developed method for protein chemical synthesis through Fmoc chemistry. Theoretical calculations have been carried out to study the mechanism for the formation of thioesters via O-to-S acyl transfer. It is found that the O-to-S acyl transfer occurs via an anionic stepwise mechanism in which the cleavage of the C-O bond is the rate-limiting step. The side reaction of hydrolysis also proceeds through an anionic stepwise process, and its rate-limiting step is the attack of the hydroxide ion on the carbonyl carbon. Increase of the chain length between the ester O atom and the S atom can increase the energy barrier of the O-to-S acyl transfer. On the other hand, substituents at the α-position of the ester can reduce the energy barrier.     

Traceless Purification and Desulfurization of Tau Protein Ligation Products

We present a novel strategy for the traceless purification and synthetic modification of peptides and proteins obtained by native chemical ligation. The strategy involves immobilization of a photocleavable semisynthetic biotin–protein conjugate on streptavidin‐coated agarose beads, which eliminates the need for tedious rebuffering steps and allows the rapid removal of excess peptides and additives. On‐bead desulfurization is followed by delivery of the final tag‐free protein product. The strategy is demonstrated in the isolation of a tag‐free Alzheimer's disease related human tau protein from a complex EPL mixture as well as a triphosphorylated peptide derived from the C‐terminus of tau.     

Theoretical Analysis of the Detailed Mechanism of Native Chemical Ligation Reactions

The method of native chemical ligation between an unprotected peptide α‐thioester and an N‐terminal cysteine–peptide to give a native peptide in aqueous solution is one of the most effective peptide ligation methods. In this work, a systematic theoretical study was carried out to fully understand the detailed mechanism of ligation. It was found that for the conventional native chemical ligation reaction between a peptide thioalkyl ester and a cysteine in combination with an added aryl thiol as catalyst, both the thiol‐thioester exchange step and the transthioesterification step proceed by an anionic concerted S_N2 displacement mechanism, whereas the intramolecular rearrangement proceeds by an addition–elimination mechanism, and the rate‐limiting step is the thiol‐thioester exchange step. The theoretical method was then extended to study the detailed mechanism of the auxiliary‐mediated peptide ligation between a peptide thiophenyl ester and an N‐2‐mercaptobenzyl peptide in which both the thiol‐thioester exchange step and intramolecular acyl‐transfer step proceed by a concerted S_N2‐type displacement mechanism. The energy barrier of the thiol‐thioester exchange step depends on the side‐chain steric hindrance of the C‐terminal amino acid, whereas that of the acyl‐transfer step depends on the side‐chain steric hindrance of the N‐terminal amino acid.     

Theoretical Study on Reaction Mechanism of Aluminum-Water System

A theoretical study on the reaction of aluminum with water in the gas phase was performed using the hybrid density functional B3LYP and QCISD(T) methods with the 6-311+G(d,p) and the 6-311++G(d,p) basis sets. The results show that there are three possible reaction pathways that involve four isomers, seven transition structures, and two possible products for the reaction of aluminum with water. The two most favorable reaction pathways were found, whose intermediates and products agreed quite well with experimental results. The enthalpy and Gibbs free energy change of the reaction between Al and H2O at 298 and 2000 K were calculated. Some results are also in good agreement with the previous calculations or experimental results.     

羟基化氧化锌催化甲醇裂解反应机理的理论研究

采用密度泛函理论的B3LYP方法在两种基组水平上研究了羟基化氧化锌催化裂解甲醇反应机理, 优化了反应过程中各反应物、中间体、过渡态和产物几何构型, 并且应用了自然轨道理论(NBO)和分子中的原子理论(AIM)分析了这些物质的成键特征和轨道间的相互作用. 研究中分别采用了羟基化一个ZnO和羟基化两个ZnO作为催化剂的两种简化模型. 结果表明两种不同基组研究所得的反应历程及相应能量变化趋势一致; 羟基化两个ZnO催化剂活化裂解甲醇反应更容易发生.     

Theoretical Study on the NO2＋NO2^— Electron Transfer Reaction

The NO2 NO2^- electron transfer reaction was studied with DFT-B3LYP method at 6-311 G^* basis set level for the eight selected structures:four species favor the structure of “head to head”.The geometry of transition state was obtained by the linear corrdinate method.Three parameters,non-adiabatic activation energy(Ead),coupling matrix element(Hif) and reorganization energy(λ) for electron transfer reaction can be calculated.According to the reorganization energy of the ET reaction,the values obtained from George-Griffith-Marcus (GGM) method(the contribution only from diagonal elements of force constant matrix) are larger than those obtained from Hessian matrix method(including the contribution from both diagonal and off-diagonal elements), which suggests that the coupling interactions between different vibrational modes are important to the inner-sphere reorganization energy for the ET reactions in gaseous phase.The value of rate constant was obtained by using above three activation parameters.     

二氯亚甲基锗烯与乙烯环加成反应机理的理论研究

The mechanism of a cycloaddition reaction between singlet dichloromethylene germylene and ethylene has been investigated with B3LYP/6-31G＊ method, including geometry optimization and vibrational analysis for the involved stationary points on the potential energy surface. Energies for the involved conformations were calculated by CCSD（T）//B3LYP/6-31G＊ method. On the basis of the surface energy profile obtained with CCSD（T）// B3LYP/6-31G＊ method for the cycloaddition reaction between singlet dichloromethylene germylene and ethylene, it can be predicted that the dominant reaction pathway is that an intermediate INT1 is firstly formed between the two reactants through a barrier-free exothermic reaction of 61.7 kJ/mol, and the intermediate INT1 then isomerizes to an active four-membered ring product P2.1 via a transition state TS2, an intermediate INT2 and a transition state TS2.1, in which energy barriers are 57.7 and 42.2 kJ/mol, respectively.