[MoFe3S4]3+ and [MoFe3S4]2+ cubane clusters containing a pentamethylcyclopentadienyl molybdenum moiety

A series of organometallic molybdenum/iron/sulfur clusters of the general formula [Cp¹MoFe₃S₄L_n]^m (Cp¹ = η⁵-C₅Me₅; L = S^tBu, SPh, Cl, I, n = 3, m = 1−; L_n = I₂(P^tBu₃), m = 0; L = 2,6-diisopropylphenylisocyanide (ArNC), n = 7, m = 1+) have been synthesized. A cubane cluster (PPh₄)[Cp¹MoFe₃S₄(S^tBu)₃] (2) was isolated from a self-assembly reaction of Cp¹Mo(S^tBu)₃ (1), FeCl₃, LiS^tBu, and S₈ followed by cation exchange with PPh₄Br in CH₃CN, while an analogous cluster (PPh₄)[Cp¹MoFe₃S₄(SPh)₃] (3) was obtained from the Cp¹MoCl₄/FeCl₃/LiSPh/PPh₄Br reaction system or from a ligand substitution reaction of 2 with PhSH. Treatment of 2 with benzoyl chloride gave rise to (PPh₄)[Cp¹MoFe₃S₄Cl₃] (4), which was in turn converted to (PPh₄)[Cp¹MoFe₃S₄I₃] (5) by the reaction with NaI. A neutral cubane cluster Cp¹MoFe₃S₄I₂(P^tBu₃) (6) was generated upon treating 5 with P^tBu₃. Although reduction of 4 by cobaltocene under the presence of ArNC resulted in a disproportionation of the cubane core to give Fe₄S₄(ArNC)₉Cl (7), a similar reduction reaction of 5 produced [Cp¹MoFe₃S₄(ArNC)₇]I (8), where the MoFe₃S₄ core was retained. The crystal structures of 4–6, and 8 were determined by the X-ray analysis.     

Computational chemistry of modified [MFe3S4] and [M2Fe2S4] clusters: assessment of trends in electronic structure and properties

The aim of this work is to understand the molecular evolution of iron-sulfur clusters in terms of electronic structure and function. Metal-substituted models of biological [Fe(4)S(4)] clusters in oxidation states [M(x)Fe(4-x)S(4)](3+/2+/1+) have been studied by density functional theory (M = Cr, Mn, Fe, Co, Ni, Cu, Zn, and Pd, with x = 1 or 2). Most of these clusters have not been characterized before. For those that have been characterized experimentally, very good agreement is obtained, implying that also the predicted structures and properties of new clusters are accurate. Mean absolute errors are 0.024 A for bond lengths ([Fe(4)S(4)], [NiFe(3)S(4)], [CoFe(3)S(4)]) and 0.09 V for shifts in reduction potentials relative to the [Fe(4)S(4)] cluster. All structures form cuboidal geometries similar to the all-iron clusters, except the Pd-substituted clusters, which instead form highly distorted trigonal and tetragonal local sites in compromised, pseudocuboidal geometries. In contrast to other electron-transfer sites, cytochromes, blue copper proteins, and smaller iron-sulfur clusters, we find that the [Fe(4)S(4)] clusters are very insensitive to metal substitution, displaying quite small changes in reorganization energies and reduction potentials upon substitution. Thus, the [Fe(4)S(4)] clusters have an evolutionary advantage in being robust to pollution from other metals, still retaining function. We analyze in detail the electronic structure of individual clusters and rationalize spin couplings and redox activity. Often, several configurations are very close in energy, implying possible use as spin-crossover systems, and spin states are predicted accurately in all but one case ([CuFe(3)S(4)]). The results are anticipated to be helpful in defining new molecular systems with catalytic and magnetic properties.     

Direct measurement of the hydrogen-bonding effect on the intrinsic redox potentials of [4Fe-4S] cubane complexes

To probe how H-bonding effects the redox potential changes in Fe-S proteins, we produced and studied a series of gaseous cubane-type analogue complexes, [Fe(4)S(4)(SEt)(3)(SC(n)H(2n+1))](2-) and [Fe(4)S(4)(SEt)(3)(SC(n)H(2n)OH)](2-) (n = 4, 6, 11; Et = C(2)H(5)). Intrinsic redox potentials for the [Fe(4)S(4)](2+/3+) redox couple involved in these complexes were measured by photoelectron spectroscopy. The oxidation energies from [Fe(4)S(4)(SEt)(3)(SC(n)H(2n)OH)](2-) to [Fe(4)S(4)(SEt)(3)(SC(n)H(2n)OH)](-) were determined directly from the photoelectron spectra to be approximately 130 meV higher than those for the corresponding [Fe(4)S(4)(SEt)(3)(SC(n)H(2n+1))](2-) systems, because of the OH...S hydrogen bond in the former. Preliminary Monte Carlo and density functional calculations showed that the H-bonding takes place between the -OH group and the S on the terminal ligand in [Fe(4)S(4)(SEt)(3)(SC(6)H(12)OH)](2-). The current data provide a direct experimental measure of a net H-bonding effect on the redox potential of [Fe(4)S(4)] clusters without the perturbation of other environmental effects.     

Probing the intrinsic electronic structure of the cubane [4Fe-4S] cluster: nature's favorite cluster for electron transfer and storage

The cubane [4Fe-4S] is the most common multinuclear metal center in nature for electron transfer and storage. Using electrospray, we produced a series of gaseous doubly charged cubane-type complexes, [Fe4S4L4]2- (L = -SC2H5, -SH, -Cl, -Br, -I) and the Se-analogues [Fe4Se4L4]2- (L = -SC2H5, -Cl), and probed their electronic structures with photoelectron spectroscopy and density functional calculations. The photoelectron spectral features are similar among all the seven species investigated, revealing a weak threshold feature due to the minority spins on the Fe centers and confirming the low-spin two-layer model for the [4Fe-4S](2+) core and its "inverted level scheme". The measured adiabatic detachment energies, which are sensitive to the terminal ligand substitution, provide the intrinsic oxidation potentials of the [Fe4S4L4]2- complexes. The calculations revealed a simple correlation between the electron donor property of the terminal thiolate as well as the bridging sulfide with the variation of the intrinsic redox potentials. Our data provide intrinsic electronic structure information of the [4Fe-4S] cluster and the molecular basis for understanding the protein and solvent effects on the redox properties of the [4Fe-4S] active sites.     

Electronic structure and intrinsic redox properties of [2Fe-2S]+ clusters with tri- and tetracoordinate iron sites

Using potentially bidentate ligands (-SC2H4NH2), we produced [2Fe-2S]+ species of different coordination geometries by fission of [4Fe-4S]2+ complexes. Even though the ligands are monodentate in the cubane complexes, both mono- and bidentate complexes were observed in the [2Fe] fission products through self-assembly because of the high reactivity of the tricoordinate iron sites. The electronic structure of the [2Fe] species was probed using photoelectron spectroscopy and density functional calculations. It was found that tetracoordination significantly decreases the electron binding energies of the [2Fe] complexes, thus increasing the reducing capability of the [2Fe-2S]+ clusters.     

4Fe4S]2+ clusters exhibit ground-state paramagnetism

Two proteins involved in nitrogen fixation contain ferredoxin-type [4Fe4S] clusters that exist in paramagnetic ground state upon oxidation, a property never observed since the discovery of ferredoxins 50 years ago. This unique characteristic suggests a specific coupling in these clusters necessary for nitrogen fixation and implies an evolutionary connection between the clusters in the two proteins.     

Ligand K-edge X-ray absorption spectroscopy of [Fe4S4]1+,2+,3+ clusters: changes in bonding and electronic relaxation upon redox

Sulfur K-edge X-ray absorption spectroscopy (XAS) is reported for [Fe(4)S(4)](1+,2+,3+) clusters. The results are quantitatively and qualitatively compared with DFT calculations. The change in covalency upon redox in both the [Fe(4)S(4)](1+/2+) (ferredoxin) and the [Fe(4)S(4)](2+/3+) (HiPIP) couple are much larger than that expected from just the change in number of 3d holes. Moreover, the change in the HiPIP couple is higher than that of the ferredoxin couple. These changes in electronic structure are analyzed using DFT calculations in terms of contributions from the nature of the redox active molecular orbital (RAMO) and electronic relaxation. The results indicate that the RAMO of HiPIP has 50% ligand character, and hence, the HiPIP redox couple involves limited electronic relaxation. Alternatively, the RAMO of the ferredoxin couple is metal-based, and the ferredoxin redox couple involves extensive electronic relaxation. The contributions of these RAMO differences to ET processes in the different proteins are discussed.     

二铁氧还盐和四铁氧还盐的电子结构

本文采用CNDO/2-SD方法计算了二铁氧还盐及四铁氧还盐的电子结构.与Roussin 红盐及Roussin 黑盐的电子结构比较,相似之处为:在铁局部对称性为四面体的簇合物中, Fe-Fe间相互作用主要由铁的s,p电子的σ贡献产生, 金属d轨道的π相互作用在占有轨道区间同时具有成键和反键贡献, 因而对骨架的形成几乎无贡献. 骨架μ2-S桥含有孤对电子,有形成μ3-S桥的可能, 但以桥硫孤对电子贡献为主的轨道都不是前线轨道. 不同之处在于端基为SH的簇合物骨架电子的非定域性较端基为NO时更强. 二核簇合物Fe与端基SH的成键能力比与NO的小, 因而在自兜反应中容易失去端基SH而形成封闭型结构.     

Double exchange in polynuclear mixed-valence clusters. 2. Iron-sulfur proteins [Fe4S4]+ and [Fe4S4]3+

The energy states of tetrameric iron clusters with d⁶-d⁶-d⁶-d⁵ and d⁵-d⁵-d⁵-d⁶ electronic configurations, which form the metal frameworks of the [Fe₄S₄]⁺ and [Fe₄S₄]³⁺ iron-sulfur proteins, are calculated using a general approach. It is revealed that the structural distortions of these systems significantly affect the composition of the magnetic states. The effect of the isotropic Heisenberg exchange is considered. Valencia University, Spain. Bordeaux University, France. Moldova State University. Institute of Chemistry, Academy of Sciences, Moldova Republic. Translated fromZhurnal Strukturnoi Khimii, Vol. 37, No. 5, pp. 816–825, September–October, 1996. Translated by I. Izvekova     

Probing the structural effects on the intrinsic electronic and redox properties of [2Fe–2S]<Superscript>+</Superscript> clusters,a broken-symmetry density functional theory study

In biological electron transport chains, [2Fe–2S] clusters have versatile electrochemical properties and serve as important electron carriers in a wide variety of biological processes. To understand structural effects on the variation in reduction potentials in [2Fe–2S] proteins, a series of [2Fe–2S] protein analogs with bidentate ligands ( − SC ₂ H ₄ NH ₂) were recently produced by collision-induced dissociation of [Fe ₄ S ₄(L)₄]²⁻ (L = SC ₂ H ₄ NH ₂). Combined with photoelectron spectroscopy findings, the reaction mechanisms of [Fe ₄ S ₄(L)₄]²⁻ to [Fe ₂ S ₂(L)₂]⁻ and the structural effects of ligands on the electronic and redox properties of the [2Fe–2S] clusters are investigated here using broken-symmetry density functional theory method. Our calculations suggest that [Fe ₂ S ₂(η² − L)(cis − L)]⁻ and [Fe ₂ S ₂(η² − L)₂]⁻ are the experimentally observed [2Fe–2S] products, which are generated via a fission process of [Fe ₄ S ₄(L)₄]²⁻ followed by rearrangement of ligands of [Fe ₂ S ₂(L)₂]⁻. Moreover, structural variation of the ferrous center may dramatically affect the oxidation energy of the [2Fe–2S] clusters.     

Structural models of the [Fe4S4] clusters of homologous nitrogenase Fe proteins

The iron (Fe) proteins of molybdenum (Mo)-, vanadium (V)-, and iron (Fe)-only nitrogenases are encoded by nifH, vnfH, and anfH, respectively. While the nifH-encoded Fe protein has been extensively studied over recent years, information regarding the properties of the vnfH- and anfH-encoded Fe proteins has remained scarce. Here, we present a combined biochemical, electron paramagnetic resonance (EPR) and X-ray absorption spectroscopy (XAS) analysis of the [Fe(4)S(4)] clusters of NifH, VnfH, and AnfH of Azotobacter vinelandii . Our data show that all three Fe proteins contain [Fe(4)S(4)] clusters of very similar spectroscopic and geometric structural properties, although NifH differs more from VnfH and AnfH with regard to the electronic structure. These observations have an interesting impact on the theory of the plausible sequence of evolution of nitrogenase Fe proteins. More importantly, the results presented herein provide a platform for future investigations of the differential activities of the three Fe proteins in nitrogenase biosynthesis and catalysis.     

Density functional theory investigation of the active site of [Fe]-hydrogenases: effects of redox state and ligand characteristics on structural,electronic, and reactivity properties of complexes related to the [2Fe]H subcluster

The effects of redox state and ligand characteristics on structural, electronic, and reactivity properties of complexes related to the [2Fe](H) subcluster of [Fe]-hydrogenases have been investigated by DFT calculations and compared with experimental and theoretical data obtained investigating both the enzyme and synthetic model complexes. Our results show that Fe(II)Fe(II) species characterized by OH or H(2)O groups terminally coordinated to the iron atom distal to the terminal sulfur ligand (Fe(d)) are less stable than corresponding mu-OH or mu-H(2)O species, suggesting that the latter are destabilized or kinetically inaccessible in the enzyme. In addition, results obtained investigating Fe(I)Fe(I) and Fe(II)Fe(I) complexes show that structure and relative stability of species characterized by a mu-CO group are significantly affected by the electronic properties of the ligands coordinated to the iron atoms. The investigation of reaction pathways for H(2) activation confirms and extends a previous hypothesis indicating that H(2) can be cleaved on Fe(II)Fe(II) species. In particular, even though [Fe]-hydrogenases are proposed to bind and activate H(2) at a single iron center, the comparison of our data with experimental results obtained studying synthetic complexes (Zhao, X.; Georgakaki, I. P.; Miller, M. L.; Mejia-Rodriguez, R.; Chiang, C.-Y.; Darensbourg, M. Y. Inorg. Chem. 2002, 41, 3917) suggests that activation paths involving both metal ions are also possible. Moreover, mu-H Fe(II)Fe(I) complexes are predicted to correspond to stable species and might be formed in the enzyme catalytic cycle.     

Reactions of synthetic [2Fe-2S] and [4Fe-4S] clusters with nitric oxide and nitrosothiols

The interaction of nitric oxide (NO) with iron-sulfur cluster proteins results in degradation and breakdown of the cluster to generate dinitrosyl iron complexes (DNICs). In some cases the formation of DNICs from such cluster systems can lead to activation of a regulatory pathway or the loss of enzyme activity. In order to understand the basic chemistry underlying these processes, we have investigated the reactions of NO with synthetic [2Fe-2S] and [4Fe-4S] clusters. Reaction of excess NO(g) with solutions of [Fe2S2(SR)4](2-) (R = Ph, p-tolyl (4-MeC6H4), or 1/2 (CH2)2-o-C6H4) cleanly affords the respective DNIC, [Fe(NO)2(SR)2](-), with concomitant reductive elimination of the bridging sulfide ligands as elemental sulfur. The structure of (Et4N)[Fe(NO)2(S-p-tolyl)2] was verified by X-ray crystallography. Reactions of the [4Fe-4S] clusters, [Fe4S4(SR)4](2-) (R = Ph, CH2Ph, (t)Bu, or 1/2 (CH2)-m-C6H4) proceed in the absence of added thiolate to yield Roussin's black salt, [Fe4S3(NO)7](-). In contrast, (Et4N)2[Fe4S4(SPh)4] reacts with NO(g) in the presence of 4 equiv of (Et4N)(SPh) to yield the expected DNIC. For all reactions, we could reproduce the chemistry effected by NO(g) with the use of trityl-S-nitrosothiol (Ph3CSNO) as the nitric oxide source. These results demonstrate possible pathways for the reaction of iron-sulfur clusters with nitric oxide in biological systems and highlight the importance of thiolate-to-iron ratios in stabilizing DNICs.     

Influence of the cation on the properties of binuclear iron nitrosyl complexes. Synthesis and crystal structure of [Pr4 nN]2[Fe2S2(NO)4]

The binuclear nitrosyl complexes Q₂[Fe₂S₂(NO)₄], where Q=Me, Et, Prⁿ, and Buⁿ, were synthesized. The crystals of [Pr₄ ⁿN]₂Fe₂S₂(NO)₄ were studied by X-ray analysis. The influence of the cation size on the electronic structure and symmetry of its local environment in the synthesized complexes was examined. The decrease in the isomeric shifts in the⁵⁷Fe Mössbauer spectra is related to the increase in the length of the alkyl substituent chain of the quaternary tetraammonium cation and is consistent with changing the structural parameters: a decrease in the bond angle of the Fe?NO bond and stretching vibrations of the NO groups due to changes in intermolecular contacts.     

Sulfur K-edge XAS and DFT calculations on [Fe4S4]2+ clusters: effects of H-bonding and structural distortion on covalency and spin topology

Sulfur K-edge X-ray absorption spectroscopy of a hydrogen-bonded elongated [Fe4S4]2+ cube is reported. The data show that this synthetic cube is less covalent than a normal compressed cube with no hydrogen bonding. DFT calculations reveal that the observed difference in electronic structure has significant contributions from both the cluster distortion and from hydrogen bonding. The elongated and compressed Fe4S4 structures are found to have different spin topologies (i.e., orientation of the delocalized Fe2S2 subclusters which are antiferromagnetically coupled to each other). It is suggested that the H-bonding interaction with the counterion does not contribute to the cluster elongation. A magneto-structural correlation is developed for the Fe4S4 cube that is used to identify the redox-active Fe2S2 subclusters in active sites of HiPIP and ferredoxin proteins involving these clusters.     

Geometric structure and electronic properties of neutral and anionic Fe2C3 and Fe2C4 clusters, as obtained by density-functional calculations

We calculated the geometrical structures and electronic properties of neutral and anionic Fe2Cn clusters (n = 3,4) using a density-functional method that employs linear combinations of atomic orbitals as basis sets, standard nonlocal norm-conserving pseudopotentials, and the generalized gradient approximation to exchange and correlation. We show that the ground-state structures of Fe2C3 and Fe2C4 are essentially the same in the neutral and anionic states, namely, planar rings that feature nonadjacent Fe atoms. For the anionic clusters, these findings contrast with previously published results.