Phosphorus NMR and Ab Initio Modelling of P–N Bond Rotamers of a Sterically Crowded Chiral β‐P4S3 Diamide

Reaction of bicyclic β‐P₄S₃I₂ with enantiomerically pure (R)‐Hpthiq (1‐phenyl‐1,2,3,4‐tetrahydroisoquinoline) and Et₃N gave a solution of a single diastereomer of the unusually stable diamide β‐P₄S₃(pthiq)₂, accounting for 83 % of the phosphorus content. Despite the steric bulk of the substituents, each amide group of this could adopt either of two rotameric positions about their P–N bonds, so that, at 183 K, ³¹P NMR multiplets for four rotamers could be observed and the spectra of three of them analysed fully. The large ²J(P–P–P) coupling became greater (253, 292, 304 Hz) with decreasing abundance of the individual rotamers. The rotamers were modelled at the ab initio RHF/3–21G* level, and relative NMR chemical shifts predicted by the GIAO method using a locally dense basis set, allowing the observed spectra to be assigned to structures. Calculations at the same level for the model compound α‐P₄S₃(pthiq)Cl confirmed the assignments of low‐temperature rotamers of α‐P₄S₃(pthiq)I reported previously. Changes in observed P–P coupling constants and ³¹P chemical shifts, on rotating a pthiq substituent, could then be compared between β‐P₄S₃(pthiq)₂ and α‐P₄S₃(pthiq)I, confirming both sets of assignments. The most abundant rotamer of β‐P₄S₃(pthiq)₂ was not the one with the least sterically crowded sides of both pthiq substituents pointing towards the P₄S₃ cage, because of interaction between the two substituents. Only by using a DFT method could relative abundances of rotamers of β‐P₄S₃(pthiq)₂ be predicted to be in the observed order. Use of racemic Hpthiq gave also the two diastereomers of β‐P₄S₃(pthiq)₂ with C_s symmetry, for which the room temperature ³¹P{¹H} NMR spectra were analysed fully.     

Phosphorus NMR Characterisation of P–N Bond Rotamers of a α‐P4S3 Amide with a Conformationally Constrained Chiral Substituent

Reactions of bicyclic α‐P₄S₃I₂ with Hpthiq gave solutions containing α‐P₄S₃(pthiq)I and α‐P₄S₃(pthiq)₂, where Hpthiq is the conformationally constrained chiral secondary amine 1‐phenyl‐1,2,3,4‐tetrahydroisoquinoline. The expected diastereomers have been characterised by complete analysis of their ³¹P{¹H} NMR spectra. Hindered P–N bond rotation in the amide iodide α‐P₄S₃(pthiq)I caused greater broadening of peaks in the room‐temperature spectrum of one diastereomer than in that of the other. At 183 K, spectra of two P–N bond rotamers for each diastereomer were observed and analysed. The minor rotamers showed strong evidence for steric crowding, having large diastereomeric differences in ¹J(P–P) and ²J(P–S–P) couplings (49 Hz, 16 % of value, and 4.4 Hz, 19 % of value, respectively).     

Spectra and Structure of Silicon-Containing Compounds. XXVIII1 Infrared and Raman Spectra,Vibrational Assignment,and Ab Initio Calculations of Vibrational Spectrum and Structural Parameters of Vinyltrichlorosilane

The infrared spectra (3200-50 cm^–1) of gaseous and solid vinyltrichlorosilane, CH₂=CH-SiCl₃, have been recorded. In addition, the Raman spectrum (3200-10 cm^–1) of the liquid has been recorded and quantitative depolarization values obtained. The infrared spectrum of the sample dissolved in liquid xenon (–80°C) has also been recorded. Using the experimental data and normal coordinate calculations with scaled ab initio force constants, the complete vibrational assignment is proposed. The torsional mode was observed in the infrared spectrum of the gas at 69 cm^–1 and the threefold barrier of internal rotation was calculated to be 500 cm^–1 (5.98 kJ/mol). Ab initio calculations have been carried out at the restricted Hartree–Fock level of the theory as well as with full electron correlation by the perturbation method to second order with different basis sets up to 6-311+G(d,p) to obtain the optimized geometries, harmonic force constants, infrared intensities, Raman activities, depolarization ratios, and vibrational frequencies. The ab initio predicted structural parameters are compared with those obtained from a previous electron diffraction study.     

Ab Initio Study of the Dehydrogenation of 3-Pyrroline, 2,5-Dihydrofuran and 2,5-Dihydrothiophene

Abstract

The nature of the transition state structures of the decomposition of 3-pyrroline (1), 2,5-dihydrofuran (2) and 2,5-dihydrothiophene (3) were investigated usingab initio Molecular Orbital (MO) and Density Factional Theory (DFT) methods. The energy barrierof the decomposition of compound 1 is smaller than compound 2 and compound 2 is smaller than compound 3. The energy barriers for the decomposition of compounds 1–3 are 46.20, 50.17, and 61.34 kcal mol^?1, respectively, which is calculated by B3LYP/6-31G^*//HF/6-31G^* level of theory. Which is ingood agreement with reported experimental data. Contrary to the previously reported data, the distance between the cis-2-and-5-hydrogen atoms in compound 1 is greater than compound 2. The transition-state structures of the decomposition of compounds 1–3 are formed by interaction of the cis-2-and-5-hydrogen atoms. Also, the rings of compounds 1–3 in the transition state structures are puckered.     

Cover Picture: Ab Initio Calculation of Parity‐Violating Chemical Shifts in NMR Spectra of Chiral Molecules (ChemPhysChem 4/2003)

The cover picture shows an intriguing effect in molecular systems, which is caused by the parity‐violating weak interactions: The chemical shifts of magnetic nuclei are predicted to differ for the two enantiomers of a chiral compound! While in the R enantiomer the nucleus (red) of the yellow center gives rise to the red NMR signal, the corresponding nucleus of the S enantiomer (green) is expected to absorb at a slightly different frequency. The ab initio approach presented by Laubender and Berger on pp. 395–399 allows for a prediction of the resulting parity‐violating line splitting (shown in the black curve) and for the identification of molecular candidates that are well‐suited to the first successful measurement of parity‐violating effects in molecules.     

Ab Initio Study on The Influence of Spin State upon Bonding,Interaction in Fe—CO

Four Fe—CO states with 3d_σ-4s, 3d_δ-3d_δ electrons spin-paired or spinunpaired were examined to investigate the influences of pairing versus unpairing mechanisms upon the bonding, interaction in Fe—CO. The calculation results show that the Fe—CO bonding, interaction are determined by a balance between the bonding stabilization, the exchange stabilization with 3d_σ-4s electron spinpairing or without it. The 3d_δ-3d_δ electron spinpairing versus unpairing has a surprised effect on the Fe—CO bonding properties even though the 3d_δ orbitals are usually considered as non bonding ones.     

Spectra and Structures of Silicon-Containing Compounds. XXIV.* Raman and Infrared Spectra,r 0 Structural Parameters,Vibrational Assignment,Barriers to Internal Rotation,and Ab Initio Calculations of Ethylsilane

The infrared (3200 to 400 cm^–1) and Raman (3200 to 20 cm^–1) spectra of gaseous and solid ethylsilane, CH₃CH₂SiH₃, have been recorded. Additionally, the Raman spectrum of the liquid has been obtained with quantitative depolarization values. The SiH₃ torsional mode has been observed as sum and difference bands with the silicon-hydrogen stretching vibration. Utilizing the torsional fundamental frequency of 132 cm^–1 the threefold periodic barrier of 590 cm^–1 (7.06 kJ/mol) has been obtained. Utilizing the frequencies of the silicon-hydrogen stretches, Si-H bond distances of 1.485 and 1.484 Å have been obtained for the bonds gauche and trans to the methyl group, respectively. Using previously reported rotational constants from seven different isotopomers, the r ₀ parameters have been calculated and are compared to the corresponding r _s parameters. A complete vibrational assignment is proposed that is consistent with the predicted frequencies utilizing the force constants from ab initio MP2/6-31G(d) calculations. Both the infrared intensities as well as the Raman activities and depolarization values have been obtained from the ab initio calculations. Complete equilibrium geometries have been determined by ab initio calculations employing the 6-31G(d), 6-311 + G(d,p), and 6-311+G(2d,2p) basis sets at levels of restricted Hartree–Fock (RHF) and/or Moller–Plesset (MP) to second order. The results are discussed and the theoretical values are compared to the experimental values when appropriate.     

Spectra and Structure of Silicon-Containing Compounds. XXV. Raman and Infrared Spectra,r 0 Structural Parameters,Vibrational Assignment,and Ab Initio Calculations of Ethyl Chlorosilane-Si-d2

The infrared (3200 to 400 cm^–1) spectra of gaseous and solid and Raman (3200 to 20 cm^–1) spectra of liquid and solid ethyl chlorosilane-Si-d₂, CH₃CH₂SiD₂Cl, have been recorded. Both the gauche and trans conformers have been identified in the fluid phases, but only the gauche conformer remains in the solid phase. Variable temperature (–105 to –150°C) studies of the infrared spectra of CH₃CH₂SiH₂Cl dissolved in liquid krypton have been carried out. From these data, the enthalpy difference has been determined to be 78±11 cm^–1 (0.93±0.13 kJ/mol), with the gauche conformer the more stable form. Utilizing the frequencies of the silicon-hydrogen stretches, from the chlorosilane-Si-d isotopomer, Si—H bond distances of 1.481 and 1.480 Å have been obtained for the gauche conformer and 1.481 Å for the trans conformer. Complete vibrational assignments are proposed for both isotopomers which are consistent with the predicted frequencies utilizing the force constants from ab initio MP2/6-31G(d) calculations. Both the infrared intensities and the Raman activities and depolarization values have been obtained from the ab initio calculations. Complete equilibrium geometries have been determined by ab initio calculations employing the 6-31(d), 6-311++G(d,p), and 6-311+G(2d,2p) basis sets with full electron correlation by the Moller–Plesset (MP) perturbation method to second order. Continuing the previously reported rotational constants from five different isotopomers and the ab initio predicted structural parameters, adjusted r ₀ parameters have been calculated, which are compared to the corresponding r _s parameters. The results are discussed and the theoretical values are compared to the experimental values when appropriate.Taken in part from the dissertation of Y. E. Nashed, which will be submitted to the Department of Chemistry in partial fulfillment of the Ph.D. degree     

The Stability of the Oxidation State +4 in Group 14 Compounds from Carbon to Element 114

The stability of the oxidation state +4 decreases from silicon to element 114, as shown by relativistic and nonrelativistic calculations on the hydrides, fluorides, and chlorides of the Group 14 elements (the energies of the decomposition reaction (1) are given in the plot). Thus it is unlikely that superheavy element 114, which may have stable isotopes due to its magic numbers of protons and neutrons, can be studied by atom-at-a-time chemistry in the oxidation state +4.     

Far-Infrared Spectra, Conformational Stability, Barriers to Internal Rotation, Ab Initio Calculations, r0 Structural Parameters, and Vibrational Assignment of Ethyl Methyl Ether

The far-infrared spectra (350–35 cm^–1) of gaseous ethyl methyl ether-d ₀ and ethyl methyl-d ₃-ether have been recorded at a resolution of 0.10 cm^–1. For the d ₀ species, the fundamental asymmetric torsion of the more stable trans conformer (two methyl moieties are trans to one another) has been observed at 115.40 cm^–1 with four upper state transitions falling to lower frequency, whereas, for the gauche form, it has been observed at 93.56 cm^–1 with two excited states falling to lower frequency. the corresponding series for the d ₃ species start from 106.00 and 87.10 cm^–1, respectively. From these data, the asymmetric torsional potential coefficients for the d ₀ species have been determined to be: V ₁ = 572 ± 30; V ₂ = 85 ± 8; V ₃ = 619 ± 30; V ₄ = 175 ± 18, and V ₆ = –28 ± 3 cm^–1. The trans to gauche and gauche to gauche barriers were calculated to be 958 cm^–1 (11.5 kJ/mol) and 631 cm^–1 (7.55 kJ/mol), respectively, with an energy difference of 550 ± 6 cm^–1 (6.58 ± 0.07 kJ/mol). Utilizing three conformer pairs, variable temperature studies (–105 to –150°C) of the infrared spectra of the d ₀ sample dissolved in liquid krypton gave an enthalpy difference of 547 ± 28 cm^–1 (6.54 ± 0.33 kJ/mol) with the trans conformer the more stable rotamer. It is estimated that there is only 4% of the gauche conformer present at ambient temperatures. The structural parameters, conformational stabilities, barriers to internal rotation, and fundamental vibrational frequencies, which have been determined experimentally, are compared to those obtained from ab initio gradient predictions from RHF/6-31G* and with full electron correlation at the MP2 level with three different basis sets. The adjusted r ₀ structural parameters have been obtained for the trans conformer from combined ab initio MP2/6-311+G** predictions and previously reported microwave rotational constants. The reported distances should be accurate to 0.003 Å and the angles to 0.5°. These results are compared to the corresponding quantities obtained for some similar molecules.     

Conformational Study of Naringenin in the Isolated and Solvated States by Semiempirical and Ab Initio Methods

Naringenin is a natural widespread flavanone occurring in different foodstuffs that presents several important biological activities. Although its properties are well documented, its mechanisms of action are still controversial. The present article reports a conformational analysis of naringenin, using the semiempirical AM1 and ab initio methods, at the Hartree–Fock level of theory. The 3-21G, 3-21G*, 6-31G, and 6-31G** basis sets were used. The electron correlation effects were included through the Møller–Plesset second-order perturbation theory. The solvation of naringenin has been investigated through the standard SCRF, the supermolecule (SM), and the combined SM/SCRF models. The results have shown that there are two degenerate forms of naringenin, differing mainly by the orientation of a hydroxyl group (C4—OH). The energy barrier for the interconversion between them is ca. 6 kcal.mol^–1, suggesting some conjugation between the -system of the aromatic B ring and the hydroxyl group (C4—OH).     

Ab Initio Studies on the Molecular Conformation of Lignin Model Compounds I. Conformational Preferences of the Phenolic Hydroxyl and Methoxy Groups in Guaiacol

Summary. The conformational preferences of the lignin guaiacyl structural unit were studied at the MP2/6-311G(d,p) level of theory using guaiacol (2-methoxyphenol) as model compound. The potential energy surface of guaiacol was investigated by the ab initio method with full geometry optimization by varying the torsion angles of the guaiacol functional groups (hydroxyl and methoxy). An overall of nine stationary points were located, four of which were found to be minima and the other five transition structures between them. The energy minima of guaiacol can adopt one cisoid and three transoid conformations for the hydroxyl and methoxy groups. The transoid structures differ by the orientation of the methoxy group inside and outside of the aromatic plane. The most stable cisoid conformer has an intramolecular hydrogen bond between phenolic hydrogen and methoxy oxygen with a binding energy of 18.09–18.51 kJ/mol as calculated with the second-order (MP2) and fourth-order (MP4SDQ) M?ller-Plesset methods and with larger polarized basis sets including diffuse functions. When comparing the geometrical parameters of the global energy structure with relevant experimental data from crystallographic structures good agreement between the data was found. The saddle points, the effect of calculation level on the energy relative stability, the rotational barrier heights, and the relative concentrations of the conformers are also discussed.     

Quantum-chemical study of the Lewis acid influence on the cycloaddition of benzonitrile oxide to acetonitrile, propyne and propene

Quantum chemical methods (MP2 and B3LYP) together with a topological analysis of the charge density have been used to study the BH₃- or BF₃-mediated reaction of benzonitrile oxide with acetonitrile, propyne and propene. In the reaction with propene or propyne, addition of Lewis acids has only little influence on the outcome of the reactions. The cycloaddition of nitrile oxides with nitriles, however, is generally promoted by strong Lewis acids. When the Lewis acid coordination takes place at the nitrile oxide the reactant is activated and the product binds weakly to the Lewis acid so that the reaction is expected to be catalytic. In the case of coordination to the nitrile the reaction is Lewis acid mediated. Here the reactant is not much influenced by addition of Lewis acid, but the transition state and the product are stabilised and consequently such processes require a stoichiometric amount of Lewis acid and form a stable Lewis acid-product complex.It has also been demonstrated that the different activation routes for these reactions involve different reaction mechanisms. Whereas the reaction of a Lewis acid coordinated nitrile oxide is of ‘inverse electron demand’, the Lewis acid coordinated nitrile reacts through a ‘normal electron demand’ cycloaddition.     

Determination of the Absolute Configuration of Pentacoordinate Chiral Phosphorus Compounds in Solution by Using Vibrational Circular Dichroism Spectroscopy and Density Functional Theory

Vibrational circular dichroism (VCD) spectroscopic measurements and density functional theory (DFT) calculations have been used to obtain the absolute structural information about four sets of diastereomers of pentacoordinate spirophosphoranes derived separately from l‐ (or d‐ ) valine and l‐ (or d‐ ) leucine for the first time. Each compound contains three stereogenic centers: one at the phosphorus center and two at the amino acid ligands. Extensive conformational searches for the compounds have been carried out and their vibrational absorption (VA) and VCD spectra have been simulated at the B3LYP/6‐311++G** level. Although both VA and VCD spectra are highly sensitive to the structural variation of the apical axis, that is, the O? P? O or N? P? O arrangement, the rotamers generated by the aliphatic amino side chains show little effect on both. The dominant experimental VCD features in the 1100–1500 cm^?1 region were found to be controlled by the chirality at the phosphorus center, whereas those at the C?O stretching region are determined by the chirality of the amino acid ligands. The good agreement between the experimental VA and VCD spectra in CDCl₃ solution and the simulated ones allows us to assign the absolute configurations of these pentacoordinate phosphorus compounds with high confidence. This study shows that the VCD spectroscopy complemented with DFT calculations is a powerful and reliable method for determining the absolute configurations and dominating conformers of synthetic phosphorus coordination complexes in solution.     

The Detection of tert-Butylthiosulfoxylic Acid,t-BuSSOH,and 1-Oxatrisulfane,HSSOH, in the Gas Phase – Experimental Results and Ab Initio Calculations

Flash vacuum pyrolysis (FVP) of tert-butylthiosulfinic acid S-tert-butylester, t-BuS(O)St-Bu, at a temperature of 500 °C and a pressure of 0.07 hPa leads to the formation of tert-butylthiosulfoxylic acid, t-BuSSOH ( 1 ), and 2-methylpropene as byproduct. 1 has been identified in the gas phase by its IR absorption bands at ν(OH) = 3598 cm^–1, δ(SOH) = 1149 cm^–1 and ν(SO) = 718 cm^–1. At higher temperatures (700 °C) the elimination of a second mole of 2-methylpropene and the shift of ν(SO) to higher wavenumbers (750 cm^–1) indicate the formation of 1-oxatrisulfane, HSSOH. Different sulfenic acids RSOH (R = Me, i-Pr, t-Bu) were synthesized by FVP in order to study the influence of the substituent R on the vibrational wavenumbers ν(OH), ν(SO) and δ(SOH) observed in the gas phase. The strongest effect results for δ(SOH) leading to a decrease by 6 wavenumbers if the methyl group is substituted by a tert-butyl group. The assignment of the experimental wavenumbers has been supported by theoretical values obtained from ab initio calculations at the MP2(fc)/6-311G** level. Furthermore, the theoretical studies show that of all compounds RS₂OR′ (R = R′ = H, Me; R = Me (H), R′ = H (Me)) the unbranched chain isomers RSSOR′ are energetically favored over the branched chain isomers. Relaxed potential energy surface scans at the MP2(fc)/6-311G** level have been carried out to study the rotational isomers of the branched molecules RS(Y)XR′ (R = R′ = H, Me; R = Me (H), R′ = H (Me); X = O (S), Y = S (O)). Of the three conformations (+)syn-clinal, (–)syn-clinal, and anti-periplanar resulting from molecular model considerations only the two latter ones correspond to local minima on the calculated potential curve. The (–)syn-clinal conformation is slightly favored for all other constitutional isomers except for HS(O)SH and MeS(O)SH, which prefer the anti-periplanar conformation.     

H, C NMR spectral and single crystal structural studies of toxaphene congeners. Quantum chemical calculations for preferred conformers of 2,5-endo,6-exo,8,9,9,10,10-octachloro-2-bornene and their DFT/GIAO C chemical shifts

The ¹H and ¹³C NMR chemical shifts for six toxaphene congeners: 2-exo,3-endo,6-exo,8,9,10-hexachloro- (1), 2-exo,3-endo,5-exo,9,9,10,10-heptachloro- (2), 2-exo,3-endo,6-exo,8,9,10,10-heptachloro- (3), 2-exo,3-endo,5-exo,6-endo,8,9,10-heptachloro- (4), 2-exo,3-endo,5-exo,6-endo,8,9,9,10-octachlorobornane (5) and 2,5-endo,6-exo,8,9,9,10,10-octachloro-2-bornene (6) are reported. Their chemical shift assignments have been obtained by means of Pulsed Field Gradient (PFG) Double Quantum Filtered (DQF) ¹H,¹H correlation spectroscopy (COSY), PFG ¹H,¹³C Heteronuclear Multiple Quantum Coherence (HMQC) and PFG ¹H,¹³C Heteronuclear Multiple Bond Correlation (HMBC) experiments. A single crystal X-ray structural analysis was made for compounds 1, 3, 4 and 6. The prevalences of two octachlorobornene rotamers (6a,6b) were elucidated by ab initio MO method and single point DFT/GIAO calculations for ¹³C chemical shifts. Theoretical calculations proved that the single crystal structure of 6 corresponds its most stable conformer in solution.     

Conformation of N,N′-bis (2,6-dimethylmorpholino), N″-dichloroacetyl phosphoric triamide: CHCl2C(O)NHP(O)[2,6(CH3)2(NC4H6O)]2. NMR and ab initio studies

Using phosphorus pentachloride as a substrate, a new carbacyclamidophosphate, N,N″-bis (2,6-dimethylmorpholino), N″-dichloroacetyl phosphoric triamide (1) has been synthesized and characterized by ¹H, ³¹P and ¹³C NMR, IR spectroscopy and elemental analysis. Due to the presence of methyl disubstituted morpholine rings and the dichloroacetamide group, several conformers can be considered for this molecule. The ³¹P{¹H} NMR spectra for the isomeric mixture of synthesized compound showed four signals with the ratio 67.1; 19.0; 12.2; 1.7, which indicates four independent conformers. The ¹H NMR spectra confirmed these results. The conformational space and the molecular geometry of the molecule in the gaseous phase have been studied using the B3LYP method of approximation, with 6-31G and 6-311++G^** basis sets.