Valence electronic structure of benzo-2,1,3-chalcogenadiazoles studied by photoelectron spectroscopy and density functional theory

The He I photoelectron spectra of benzo-2,1,3-thia-, selena-, and telluradiazole were measured, and the observed ionization bands were assigned by comparison with the results of DFT calculations. Whereas the B3LYP exchange-correlation functional provided orbital energies that permitted a preliminary assignment by application of Koopman's theorem, a more-accurate interpretation was established by calculation of the vertical ionization energies with the PW91 functional and analysis of the correlation of energy levels along the homologous series. This strategy clarified earlier disagreements in the assignment of the spectrum of benzo-2,1,3-thiadiazole.     

Structure of the ammonia dimer studied by density functional theory

Self-consistent Kohn–Sham density functional calculations have been carried out to study the structure of the ammonia dimer. The local-density approximation yields unusually large binding energy and short internitrogen distance compared with the experimental and more accurate theoretical data. The results from the Becke–Perdew gradient-corrected functionals are generally in good agreement with those at the SCF MP 2 level when the geometry is fully optimized with various large basis sets. With our best estimation, the staggered quasi-linear structure (C_s) is 0.6 kcal/mol lower in energy than the symmetric cyclic one (C_2h). The hydrogen-bonded N—H bond in the staggered quasi-linear structure is found to be 0.008 Å longer than the N—H bond in ammonia. In our calculations, we could not find the minima on the energy surface corresponding to the two asymmetric cyclic structures suggested by microwave spectra and coupled pair functional calculations. © 1994 John Wiley & Sons, Inc.     

Furanized rubber studied by NMR spectroscopy

The double bonds of natural rubber latex (stabilized by a nonionic surfactant) were reacted with an approximately equimolar amount of performic acid at room temperature with a limited amount of formic acid present. Product analysis by ¹H-NMR during the course of the reaction showed that 69–90% epoxidation occurred before the advent of ring opening and ring expansion to produce furanized rubber; hence the rate of epoxidation was greater than the rate of furanization. Indeed, at lower concentrations of formic acid and rubber latex, epoxidation occurred to 90% and furanization was prevented; it was subsequently brought about by the addition of a catalytic amount of orthophosphoric acid. Increased formic acid concentration caused early coagulation of the modified rubber latex. By ¹H- and ¹³C-NMR, it was found that the furanized rubber probably consisted of tetrahydrofuran rings linked together by C? C bonds at positions adjacent to the hetero atom and contained a terminal hydroxy group. The number average sequence length was 2–9, but only the sample with an average sequence length of 9 was effective as a cation binder.     

Electronic structure and optical properties of charged oligofluorenes studied by VIS/NIR spectroscopy and time-dependent density functional theory

The electronic structure and optical properties of charged oligofluorenes were studied experimentally and theoretically. Measurements of the optical absorption spectra of charged oligofluorenes in dilute solutions have been performed by using the pulse radiolysis technique. In addition, optical absorption spectra of radical cations and anions in a solid matrix were measured after gamma-irradiation at 77 K. The optical absorption spectra were measured in the range of 440-2100 nm (0.6-2.8 eV) and compared with results from time-dependent density functional theory (TDDFT) calculations. The calculated charge induced deformations and charge distribution do not indicate the occurrence of polaronic effects. The potential energy profiles for rotation around the inter-unit bond show that oligofluorenes are nonplanar in their neutral state, while they tend to more planar structures in their charged state. The optical absorption spectra of charged oligofluorenes are dependent on the angle between neighboring units. TDDFT absorption energies shift to lower values with increasing chain length, which suggests that the charge delocalizes along the oligomer chain.     

Water cluster anions studied by the long-range corrected density functional theory

Long-range corrected density functional theory (LC-DFT) is applied to a series of small water cluster anions(n= 2-6) to compute their vertical detachment energies (VDEs). The LC scheme is shown to eliminate an unphysical overestimation of the electron-water attraction in the hybrid functional by properly accounting for the long-range exchange repulsions. It is shown that a correct correlation energy behavior for a rapidly varying density is also important for describing a spatially extent, excess electron. The one-parameter progressive (OP) correlation functional, which satisfies this condition, leads to a remarkable improvement in the calculated VDE over the conventional one. The LC-BOP method produces highly accurate VDEs with a mean absolute deviation of 13.8 meV from the reference CCSD(T) results, reducing the error of B3LYP by more than 15 times. LC-BOP is found to be more accurate than MP2 which yields an excess electron underbound by 43.6 meV. The effect of basis sets on the calculated VDE is also examined. The aug-cc-pVDZ basis set with an extra diffuse function is found to be more accurate and reliable than the extended Pople-type basis sets used in the previous works. The extrapolation of the calculated VDE of different electron binding motifs is compared with the VDEs of experimentally observed three isomers (Verlet, J. R. R.; Bragg,A. E.; Kammrath, A.; Cheshnovsky, O.; Neumark, D. M. Science 2005, 307, 93).     

An investigation of lanthanum coordination compounds by using solid-state 139La NMR spectroscopy and relativistic density functional theory

Lanthanum-139 NMR spectra of stationary samples of several solid La(III) coordination compounds have been obtained at applied magnetic fields of 11.75 and 17.60 T. The breadth and shape of the 139La NMR spectra of the central transition are dominated by the interaction between the 139La nuclear quadrupole moment and the electric field gradient (EFG) at that nucleus; however, the influence of chemical-shift anisotropy on the NMR spectra is non-negligible for the majority of the compounds investigated. Analysis of the experimental NMR spectra reveals that the 139La quadrupolar coupling constants (C(Q)) range from 10.0 to 35.6 MHz, the spans of the chemical-shift tensor (Omega) range from 50 to 260 ppm, and the isotropic chemical shifts (delta(iso)) range from -80 to 178 ppm. In general, there is a correlation between the magnitudes of C(Q) and Omega, and delta(iso) is shown to depend on the La coordination number. Magnetic-shielding tensors, calculated by using relativistic zeroth-order regular approximation density functional theory (ZORA-DFT) and incorporating scalar only or scalar plus spin-orbit relativistic effects, qualitatively reproduce the experimental chemical-shift tensors. In general, the inclusion of spin-orbit coupling yields results that are in better agreement with those from the experiment. The magnetic-shielding calculations and experimentally determined Euler angles can be used to predict the orientation of the chemical-shift and EFG tensors in the molecular frame. This study demonstrates that solid-state 139La NMR spectroscopy is a useful characterization method and can provide insight into the molecular structure of lanthanum coordination compounds.     

Phylloquinone and related radical anions studied by pulse electron nuclear double resonance spectroscopy at 34 GHz and density functional theory

1H hyperfine (hf) coupling constants of semiquinone radical anions of 1,4-naphthoquinone, 2-methyl-1,4-naphthoquinone, and 2-methyl-3-phytyl-1,4-naphthoquinone in frozen alcoholic solutions were measured using pulse Q-band electron nuclear double resonance spectroscopy. The resolved signals of the quinone protons as well as from hydrogen bond and solvent shell protons were analyzed and assigned. Both in-plane and out-of-plane hydrogen bonding with respect to the pi-plane of the radical is observed. Interactions with nonexchangeable protons from the surrounding matrix are detected and assigned to solvent protons above and below the quinone plane. Density functional theory was used to calculate spin Hamiltonian parameters of the radical anions. Solvent molecules of the first solvent shell that provide hydrogen bonds to the quinones were included in the geometry optimization. The conductor-like screening model was employed to introduce additional effects of the solvent cage. From a comparison of the experimental and calculated hf tensors it is concluded that four solvent molecules are coordinated via hydrogen bonds to the quinone oxygens. For all radicals very good agreement between experimental and calculated data is observed. The influence of different substituents on the spin density distribution and hydrogen bond geometries is discussed.     

Determination of critical indices by "slow" spectroscopy: NMR shifts by statistical thermodynamics and density functional theory calculations

The temperature dependencies of NMR shifts in the critical region of two coexisting phases have been simulated using statistical thermodynamics and graph-theory consideration of equilibrium processes of molecular association. Microparameters of magnetic screening of various water and water/pyridine structures used in the statistical averaging have been evaluated by density functional theory calculations (PBE1PBE and B3PW91 functionals in the 6-311++G** basis set). The gauge-including atomic orbital (GIAO) approach has been applied to ensure gauge invariance of the results. Solvent effects were taken into account by a polarized continuum model (PCM). NMR shifts "order parameters" (Deltadelta = |delta+ - delta-|) and "diameters" (phidelta = |(delta+ + delta-)/2 - deltaC|, where delta+, delta-, and deltaC are the chemical shifts of coexisting phases and at the critical point respectively) have been calculated in each case close to the lower critical solution point (TL) and processed using linear regression analysis of Deltadelta approximately |T - TL| and phidelta approximately |T - TL| in the log-log plot. It has been shown that the critical index beta can be evaluated with high precision from the slope of Deltadelta = f(T - TL) at any realistic set of model input parameters. The slope of diameter has been found to depend on both input beta and alpha values. The obtained phidelta slopes (0.58-0.63) are very close to 2beta values. The results are discussed within the concept of complete scaling. Results of simulation are compared and supported by experimental NMR data for water/2,6-lutidine, acetic anhydride/n-heptane, and acetic anhydride/cyclohexane systems.     

NMR shielding tensors from auxiliary density functional theory

The working equations for the calculation of NMR shielding tensors in the framework of auxiliary density functional theory are derived. It is shown that in this approach the numerical integration over gauge-including atomic orbitals can be avoided without the loss of accuracy. New integral recurrence relations for the required analytic electric-field-type integrals are derived. The computational performance of the resulting formalism permits shielding tensor calculations of systems with more than 1000 atoms and 15,000 basis functions.     

Improving density functional theory for crystal polymorph energetics

We show that the quality of density functional theory (DFT) predictions for the relative stabilities of polymorphs of crystalline para-diiodobenzene (PDIB) is dramatically improved through a simple two-body correction using wavefunction-based electronic structure theory. PDIB has two stable polymorphs under ambient conditions, and like Hongo et al. [J. Phys. Chem. Lett., 1, 1789 (2010)] we find that DFT makes wildly variable predictions of the relative stabilities, depending on the approximate functional used. The two-body corrected scheme, using Grimme's spin-scaled variant of second-order M?ller-Plesset perturbation theory and any of the tested density functionals, predicts the α-polymorph to be more stable, consistent with experiment, and produces a relative stability that agrees with the benchmark quantum Monte-Carlo results of Hongo et al. within statistical uncertainty.     

氢化可的松的热力学函数和晶体结构——密度泛函理论分析

采用密度泛函理论B3LYP/6-31G和B3LYP/6-311G*方法优化了气相状态氢化可的松的几何结构,利用优化的结构得到了氢化可的松各原子净电荷及前沿轨道分布;基于简谐振动分析求得氢化可的松的红外光谱频率和热力学函数;并计算了环己烷、乙酸丁酯、二氯乙烷、异丙醇、甲醇、水六种不同极性的溶剂对氢化可的松几何构型、电荷分布及能量的影响.结果表明,由理论计算得到的氢化可的松的晶体结构与实测的晶体结构接近.     

Hydrogen exchange in benzamidoximes studied by NMR spectroscopy

The hydrogen exchange process in benzamidoximes ( 1 and 2 ) was studied over a range of temperature and a determination of the activation parameter ΔG? for this process was made.     

Deciphering the potassium storage phase conversion mechanism of phosphorus by combined solid-state NMR spectroscopy and density functional theory calculations

Phosphorus is the potential anode material for emerging potassium-ion batteries(PIBs) owing to the highest specific capacity and relatively low operation plateau. However, the reversible delivered capacities of phosphorus-based anodes, in reality, are far from the theoretical capacity corresponding to the formation of K₃P alloy. And, their underlying potassium storage mechanisms remain poorly understood.To address this issue, for the first time, we perform high-resolution solid-state ...     

Photophysical properties of natural light-harvesting complexes studied by subsystem density functional theory

In this study, we investigate the excited states and absorption spectra of a natural light-harvesting system by means of subsystem density functional theory. In systems of this type, both specific interactions of the pigments with surrounding protein side chains as well as excitation energy transfer (EET) couplings resulting from the aggregation behavior of the chromophores modify the photophysical properties of the individual pigment molecules. It is shown that the recently proposed approximate scheme (J. Chem. Phys. 2007, 126, 134116) for coupled excitations within a subsystem approach to time-dependent DFT is capable of describing both effects in a consistent manner, and is efficient enough to study even the large assemblies of chromophores occurring in the light-harvesting complex 2 (LH2) of the purple bacterium Rhodopseudomonas acidophila. A way to extract phenomenological coupling constants as used in model calculations on EET rates is outlined. The resulting EET coupling constants and spectral properties are in reasonable agreement with the available reference data. Possible problems related to the effective exchange-correlation kernel are discussed.     

Location of Mg cations in mordenite zeolite studied by IR spectroscopy and density functional theory simulations with a CO adsorption probe

The location of Mg cations in the channel of mordenite zeolite was studied using a combination of DFT simulations and IR spectroscopy of adsorbed CO. The calculated adsorption energies and frequencies of CO on Mg cations are in good agreement with the results from the IR spectra of adsorbed CO. It is found that the Mg cations can occupy the sites A, C, D and E in mordenite and the distribution of the Mg cations in these sites follows the priority order, site C > site A > site D and site E.     

Dynamics of intramolecular hydrogen-atom migrations in 2-hydroxy-3-nitropyridine studied by low-temperature matrix-isolation infrared spectroscopy and density functional theory calculation

Intramolecular hydrogen-atom migrations in 2-hydroxy-3-nitropyridine have been investigated by low-temperature matrix-isolation infrared (IR) spectroscopy with the aid of density functional theory (DFT) calculation. An IR spectrum measured after deposition was assigned to an enol isomer, the conformation of which is anti in relation to OH versus N in the pyridine ring. When the matrix sample was exposed to UV and visible light (lambda>350 nm), an IR spectrum consistent with a keto product was observed. During the irradiation, an IR spectrum of a transient species, a photoreaction intermediate between anti-enol and keto, was observed, which was assigned to syn-enol. The bands of syn-enol disappeared completely when the irradiation was stopped, while those of the original isomer, anti-enol, reappeared. No reverse isomerization was observable in the corresponding deuterated species. This led to the conclusion that the isomerization from syn to anti occurs through hydrogen-atom tunneling. On the other hand, an aci-nitro form was produced by UV irradiation (lambda=365+/-10 nm) without visible light. The conformation around the aci-nitro group was determined to be cis-cis by comparison with the spectral patterns obtained by the DFT/B3LYP/6-31++G** calculation. The dynamics of the hydrogen-atom migrations between anti- and syn-enols, syn-enol and keto, and anti-enol and aci-nitro are discussed in terms of the potential surfaces obtained by the DFT calculation.     

Electron density distributions in substituted 2,3,4,5-tetraphenyl-1-germacyclopenta-2,4-dienes studied by NMR spectroscopy

The signals in the¹³C NMR spectra of 2,3,4,5-tetraphenyl-1-germacyclopenta-2,4-dienes (R¹=R²=H, Me,cyclo-C₃H₅, SiMe₃, SnMe₃, R¹=Me, R²=H, Cl) were completely assigned using 2D NMR spectroscopy. The pattern of the variation of the chemical shifts in the¹³C NMR spectra indicates that the effects of substituents R¹ and R² on the heterocycle and on the phenyl groups are of inductive rather than mesomeric origin and include the direct through-space polarization of bonds (field effect). Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 11, pp. 1962–1965, November, 1997.     

Eu(3+)-mediated polymerization of benzenetetracarboxylic acid studied by spectroscopy, temperature-dependent calorimetry, and density functional theory

Thermodynamic parameters for the complexation of Eu(3+) with pyromellitic acid (1,2,4,5-benzenetetracarboxylic acid, BTC) as a model system for polymerizable metal-complexing humic acids were determined using temperature-dependent time-resolved laser-induced fluorescence spectroscopy (TRLFS) and isothermal titration calorimetry (ITC). At low metal and ligand concentrations (<50 μM Eu(3+), <1 mM BTC), a 1:1 monomeric Eu-BTC complex was identified in the range of 25-60 °C. At elevated concentrations (>500 μM Eu(3+) and BTC) a temperature-dependent polymerization was observed, where BTC monomers are linked via coordinating shared Eu(3+) ions. The two methods lead to comparable thermodynamic data (ΔH = 18.5 ± 1.5/16.5 ± 0.1 kJ mol(-1); ΔS = 152 ± 5/130 ± 5 J mol(-1) K(-1); TRLFS/ITC) in the absence of polymerization. With the onset of polymerization, TRLFS reveals the water coordination number of the lanthanide, whereas calorimetry is superior in determining the thermodynamic data in this regime. Evaluating the heat uptake kinetics, the monomer and polymer formation steps could be separated by "time-resolved" ITC, revealing almost identical binding enthalpies for the sequential reactions. Structural features of the complexes were studied by Fourier-transform infrared (FTIR) spectroscopy in combination with density functional theory (DFT) calculations showing predominantly chelating coordination with two carboxylate groups in the monomeric complex and monodentate binding of a single carboxylate group in the polymeric complex of the polycarboxylate with Eu(3+). The data show that pyromellitic acid is a suitable model for the study of metal-mediated polymerization as a crucial factor in determining the effect of humic acids on the mobility of heavy metals in the environment.